BAC Information

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BAC

Clone NameB6Ng01-110J16
Chromosome4 (Build37)4 (Build37)
Map Location 146,164,956 - 146,165,820146,633,585 - 146,634,562
singlet/doubletsingletsinglet
Overlap geneOTTMUSG00000010694
Upstream geneLOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, LOC626480
Downstream geneLOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110J16.bB6Ng01-110J16.g
ACCDH917179DH917180
length1,143968
definitionDH917179|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J16, 5' end.DH917180|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,164,956 - 146,165,820)(146,633,585 - 146,634,562)
sequence
gaattcatacaggagagaaaccttacaaatgtaatgaatgtgacaaatgc
tttactgacaaaggcagtctgagagttcatcagagatttcatacaggaga
gaaaccttacaaatgtagtgaatgtgacaaatgttttattcaaaaatgca
gtctgataattcatcagagaattcatacaggagagaaaccttacaaatgt
agtgaatgtgacaaagctttactgagaaagtcaatctgagaaggcatcag
agaactcatacaggggagaattcttacaaatgtattgaatgtgacaaatg
ttttgcccagaaatcctatcttgtttttaatcacagaaatcatacattaa
agaagccttacaaatgcagtcaatgtgacaaatgattttcccacaaactt
agtctgagaatgcatcagagaattcatacagtagagaaaacttacaaaaa
tgcagtgaatgtgataaatgctttactaataaaggcagactgagaattaa
tcagataatttatacatttaaaaaaacccttacaagtattttgtatgtga
taaatgcagtacccacaacatcagtctgacaaatcaacagatatttcaaa
cagtagagcaacattataaatgaaatgaatgagatagtcctttaacaaga
aatatcatcttaaaattcactggagaattcttccaaaagggaaacttttc
aaatacattgacggtttgaatcctttattttggcctatctcttagaatgt
aatagataatttatacaggcaagaatcttaacaaatataatatatgctga
aatatctttgacttcatttcagtgcagaaaaatatgtaaaaaatattttt
atgggaaaaatagttctcctggggaaatgtggcatatgttttacacgggt
aatattccttttcaacagtcagtgcctctaaactagagaattattatgat
ctgaaaacttttgaaccttcatgcaatgtcaatcttagataatgtcacta
ttatgctgcagtactcttgataatgaatagtggaagaacattcattactt
tacctgtcaccccccatatttaatgatgagtcaggttgaaagccagaaga
aatatgatgtgtgcaacattcattgaatgaatgatcattccaa
gaattcaaattattcttaggtgagcagactaccctgcagctcaatgaatg
atttctcagttttaagacaattggaaatatgtgttttcctatgcttttaa
gcaaccactgtgaaagggtctttacaccccaaagggattgttatctatca
cttgaaaataactattaactttatgatacagccttgcaaaaatatttatg
acttccgcgtatttttttatgtgaggcatttcctgggaagatgcaacata
tattcatctcagtatcacaagtgcaaattgaaaacaaccaaagcaaactt
gttgaaactttcagctttattggagttagttacaggacaataggaaagga
gtggttgaccagatcacaagagactcatactcagttgttatcctataatg
tgaaacaagcatttgagaagaattatgatttctggatactcgaagcacac
ttaacatctgtaagcatacttataggataaagaatatgctgtctgggtgg
ctcagtttgccagatactcttttaagtatcatttttctgaattagttcat
gtgaattaaatatacagaatgttaccagttttattagatattgtgaggat
tgtattaaagaccttaataaattttctttgaaatggattatttctttctc
agtgtgttatgcaatactatcttctgacttccccacttttcttcatgttg
taacatttgagggtgaacaagtaaaagttgtcatgaaaggctttctacat
ttttacatgtacagagttcatccagcataaatagttgacattacccaaga
tttgaacattgcatgaaaattttcaccagattttcataatcatactaatt
ctctagagtggagctcaagtgtgtcaagatacaccttgaataaaacatat
gcacattttttcccaacagaaatactatcccttaaaagtctaatgtttct
ctgactgaatgaagtcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146164956_146165820
seq2: B6Ng01-110J16.b_349_1191

seq1  TTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCCAGAAATCCTATCTTGTTTTTAATCACAGAAATCATACATTAA  50

seq1  AGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTTACAAATGCAGTCAATGTGACAAATGATTTTCCCACAAACTT  100

seq1  AGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAACTTACAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGAATGCATCAGAGAATTCATACAGTAGAGAAAACTTACAAAAA  150

seq1  TGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAATGTGATAAATGCTTTACTAATAAAGGCAGACTGAGAATTAA  200

seq1  TCAGATAATTTATACATTTAAAAAAACCCTTACAAGTATTTTGTATGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAATTTATACATTTAAAAAAACCCTTACAAGTATTTTGTATGTGA  250

seq1  TAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCAGTACCCACAACATCAGTCTGACAAATCAACAGATATTTCAAA  300

seq1  CAGTAGAGCAACATTATAAATGAAATGAATGAGATAGTCCTTTAACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGCAACATTATAAATGAAATGAATGAGATAGTCCTTTAACAAGA  350

seq1  AATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATCTTAAAATTCACTGGAGAATTCTTCCAAAAGGGAAACTTTTC  400

seq1  AAATACATTGACGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTGACGGTTTGAATCCTTTATTTTGGCCTATCTCTTAGAATGT  450

seq1  AATAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATAATTTATACAGGCAAGAATCTTAACAAATATAATATATGCTGA  500

seq1  AATATCTTTGACTTCATTTCAGTGCAGAAAAAATATGTAAAAAAATATTT  550
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  AATATCTTTGACTTCATTTCAGTGCAG-AAAAATATGT-AAAAAATATTT  548

seq1  TTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTACACGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGAAAAATAGTTCTCCTGGGGAAATGTGGCATATGTTTTACACGG  598

seq1  GTAATATT-CTTTTCAACAGTCAGTG-CTCTAAACTAGAGAATTATTATG  648
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  GTAATATTCCTTTTCAACAGTCAGTGCCTCTAAACTAGAGAATTATTATG  648

seq1  AATCTGAAAACTTTTGAAAACCTTCATGCAATGTTCAAATCTTAGATAAT  698
       |||||||||||||||  ||||||||||||||||   |||||||||||||
seq2  -ATCTGAAAACTTTTG--AACCTTCATGCAATGT--CAATCTTAGATAAT  693

seq1  GTCAACTATTATGCTGGCAGTAACTCTGAATATATG-ATAGTGAAGAAAC  747
      ||| ||||||||||| ||||| |||||  ||| ||| |||||| |  |||
seq2  GTC-ACTATTATGCT-GCAGT-ACTCTTGATA-ATGAATAGTGGAAGAAC  739

seq1  ATTTTCATTAAACTTTTACTTGTTCACCCTCAAATATTATATGATGAAGT  797
      |  |||||||    ||||| || |||||| |  |||||  |||||| |||
seq2  A--TTCATTA---CTTTACCTG-TCACCC-CCCATATTTAATGATG-AGT  781

seq1  CAGGTGTGAAAGCCAGAAG-AATATGATGTTGTGCAACAATTCATGGAGA  846
      ||||| ||||||||||||| ||||||||| |||||||| |||||| ||  
seq2  CAGGT-TGAAAGCCAGAAGAAATATGATG-TGTGCAAC-ATTCATTGA--  826

seq1  TAGAAATGATCCATTCCAA  865
       |  |||||| ||||||||
seq2  -ATGAATGAT-CATTCCAA  843

seq1: chr4_146633585_146634562
seq2: B6Ng01-110J16.g_63_1030 (reverse)

seq1  TTGACTTCATTTCAGGTCAGAGAAAACATCTAAGAACTTTTTAAGGGATA  50
      ||||||||| |||| ||||||| |||||  | |||   ||||||||||||
seq2  TTGACTTCA-TTCA-GTCAGAG-AAACA--TTAGA--CTTTTAAGGGATA  43

seq1  GTATTTCTGTTGGG-AAAAATGTGGCATATGTTTTATTCAAGGTGTATTC  99
      |||||||||||||| |||||||| ||||||||||||||||||||||| ||
seq2  GTATTTCTGTTGGGAAAAAATGT-GCATATGTTTTATTCAAGGTGTA-TC  91

seq1  TTGACAACACTTGAGGCTCCACTCTAGAGAATTAGTATGATTATGAAAAT  149
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGAC-ACACTTGA-GCTCCACTCTAGAGAATTAGTATGATTATGAAAAT  139

seq1  CTTGTGAAAATTTTCATGCAATGTTCAAATCTTGGGTAATGTCAACTATT  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAAAATTTTCATGCAATGTTCAAATCTTGGGTAATGTCAACTATT  189

seq1  TATGCTGGATGAACTCTGTACATGTGAAAATGTAGAAAGCCTTTCATGAC  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATGCTGGATGAACTCTGTACATGTAAAAATGTAGAAAGCCTTTCATGAC  239

seq1  AACTTTTACTTGTTCACCCTCAAATGTTACAACATGAAGAAAAGTGGGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTACTTGTTCACCCTCAAATGTTACAACATGAAGAAAAGTGGGGA  289

seq1  AGTCAGAAGATAGTATTGCATAACACACTGAGAAAGAAATAATCCATTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAGATAGTATTGCATAACACACTGAGAAAGAAATAATCCATTTC  339

seq1  AAAGAAAATTTATTAAGGTCTTTAATACAATCCTCACAATATCTAATAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATTTATTAAGGTCTTTAATACAATCCTCACAATATCTAATAAA  389

seq1  ACTGGTAACATTCTGTATATTTAATTCACATGAACTAATTCAGAAAAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAACATTCTGTATATTTAATTCACATGAACTAATTCAGAAAAATG  439

seq1  ATACTTAAAAGAGTATCTGGCAAACTGAGCCACCCAGACAGCATATTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAAAGAGTATCTGGCAAACTGAGCCACCCAGACAGCATATTCTT  489

seq1  TATCCTATAAGTATGCTTACAGATGTTAAGTGTGCTTCGAGTATCCAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTATAAGTATGCTTACAGATGTTAAGTGTGCTTCGAGTATCCAGAA  539

seq1  ATCATAATTCTTCTCAATTGCTTGTTTCACATTATAGGATAACAACTGAG  599
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCATAATTCTTCTCAAATGCTTGTTTCACATTATAGGATAACAACTGAG  589

seq1  TATGAGTCTCTTGTGATCTGGTCAACCACTCCTTTCCTATTGTCCTGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTCTCTTGTGATCTGGTCAACCACTCCTTTCCTATTGTCCTGTAA  639

seq1  CTAACTCCAATAAAGCTGAAAGTTTCAACAAGTTTGCTTTGGTTGTTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCCAATAAAGCTGAAAGTTTCAACAAGTTTGCTTTGGTTGTTTTC  689

seq1  AATTTGCACTTGGGATACTGAGATGAATATATGTTGCATCTTCCCAGGAA  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATTTGCACTTGTGATACTGAGATGAATATATGTTGCATCTTCCCAGGAA  739

seq1  ATGCCTCACATAAAAAAATACGCGGAAGTCATAAATATTTTTGCAAGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCACATAAAAAAATACGCGGAAGTCATAAATATTTTTGCAAGGCT  789

seq1  GTATCATAAAGTTAATAGTTATTTTCAAGTGATAGATAACAATCCCTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATAAAGTTAATAGTTATTTTCAAGTGATAGATAACAATCCCTTTG  839

seq1  GGGTGTAAAGACCCTTTCACAGTGGTTGCTTAAAAGCATAGGAAAACACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAAAGACCCTTTCACAGTGGTTGCTTAAAAGCATAGGAAAACACA  889

seq1  TATTTCCAATTGTCTTAAAACTGAGAAATCATTCATTGAGCTGCAGGGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCAATTGTCTTAAAACTGAGAAATCATTCATTGAGCTGCAGGGTA  939

seq1  GTCTGCTCACCTAAGAATAATTTGAATTC  978
      |||||||||||||||||||||||||||||
seq2  GTCTGCTCACCTAAGAATAATTTGAATTC  968