BAC Information

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BAC

Clone NameB6Ng01-110O08
Chromosome4 (Build37)
Map Location 75,940,011 - 76,120,321
singlet/doubletdoublet
Overlap genePtprd
Upstream geneLOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110O08.bB6Ng01-110O08.g
ACCDH917387DH917388
length1,203577
definitionDH917387|Mus musculus domesticus DNA, BAC clone: B6Ng01-110O08, 5' end.DH917388|Mus musculus domesticus DNA, BAC clone: B6Ng01-110O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,940,011 - 75,941,218)(76,119,748 - 76,120,321)
sequence
gaattctcaaaaagcctatactatagaaacagtacaaaaatctaaaaggg
caaagccatgaaccaagagcatctggaaacagcagtagaggccctgtcag
aagcaggagatatgagtttaaccacaggtcaaaattcatcctccctttgt
tctctatggaggtatcacaacagcatagaaattggggtgaaagatgaagt
accaatagatcttgctctatcaacttggatttgacataggttatctagat
caagactttatcttacagataagagtaaaataccattcagttcattccta
ttaacagagccattcactttactagcaaatagttactaagaacctgcttg
attaaagcaccgcctgacactcaaggtagagaaatggaaagtggaggata
aaccatgagggctaagagaaaaagctaatcaagtaatcaaatgtgaagtg
ttattccatgggttaagaattgtgatacggtctgaaatggtagagcagag
agacctactaagcctgtaaaaggtagacctcaagaaggacagagcagaca
agaaagaatgccttcatcagcatagaggaaataacaacagaaaggccatg
cacataggttttaagataattacaatgtagtaagcagagagggaggtaac
agaaaatgatggagagtcccataggaggaagagcactgggtgacaagaga
atgcaagaggagagctgaggggctaaaagggagctgatacagtgaataat
tctttattccaactcacggtggttacaaagtttgtttatgctatagaagg
tcattagaactttagaaactgtaggtattcccttgtaagtactcagccca
gattgtcattatatggctgctgaaaccaggtctacctacacagttctgac
ttgggacttcccaataactgtttctcttcaactcttccctttgaaaactc
agatgttttatcaagataaacgtaagtatttttctcttgaaaacataatg
tactttctcataataatatgatttctaattttctcacttctcaagtatca
taataatgctaatattactattaacagtaaaacgtaatatttgtctgcct
tgaaagaattatatgcctgctcctaatccataaaactaggacaatcccaa
atttttatttgcttagagtgagaccttaggaaatgctaatcctgaataca
gtc
gaattcctaagaacagctgctgtattagcctctaggcatttgtgttagag
tggatgtgaagaagaaattagatcctgggttggcatttaattgttaaagt
acctgtttttcttccaaaggacctgagttctgttcttacatcttaaatgc
ctttttaactccagttccagaaaatatgatattctcttctggtacatatt
agcaccaatgtacatgttattcactcacagacacacagacatacataaaa
ataaaaataataaaaacaaacctaaaagggaataacatttgaaatgtaaa
taaagaaaatatctaataaaagaaaaaagaaaacaaactaaaagaaagaa
atacagaaagaaagggagaaacacagaaagaaggagagagagagagagag
agagagagagagagagagagagagagagagagagagagagagagagagat
gtaatccacacggacaaattgtctaagagcagtttgctgctggtccatgg
ctaaacctaacttttgtgtcccaggttgacatctatgcagtgcttacaag
gattgagttgagaatttatttacgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_75940011_75941218
seq2: B6Ng01-110O08.b_49_1251

seq1  GAATTCTCAAAAAGCCTATACTATAGAAACAGTACAAAAATCTAAAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAAGCCTATACTATAGAAACAGTACAAAAATCTAAAAGGG  50

seq1  CAAAGCCATGAACCAAGAGCATCTGGAAACAGCAGTAGAGGCCCTGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCATGAACCAAGAGCATCTGGAAACAGCAGTAGAGGCCCTGTCAG  100

seq1  AAGCAGGAGATATGAGTTTAACCACAGGTCAAAATTCATCCTCCCTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAGATATGAGTTTAACCACAGGTCAAAATTCATCCTCCCTTTGT  150

seq1  TCTCTATGGAGGTATCACAACAGCATAGAAATTGGGGTGAAAGATGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATGGAGGTATCACAACAGCATAGAAATTGGGGTGAAAGATGAAGT  200

seq1  ACCAATAGATCTTGCTCTATCAACTTGGATTTGACATAGGTTATCTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAGATCTTGCTCTATCAACTTGGATTTGACATAGGTTATCTAGAT  250

seq1  CAAGACTTTATCTTACAGATAAGAGTAAAATACCATTCAGTTCATTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTTTATCTTACAGATAAGAGTAAAATACCATTCAGTTCATTCCTA  300

seq1  TTAACAGAGCCATTCACTTTACTAGCAAATAGTTACTAAGAACCTGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAGCCATTCACTTTACTAGCAAATAGTTACTAAGAACCTGCTTG  350

seq1  ATTAAAGCACCGCCTGACACTCAAGGTAGAGAAATGGAAAGTGGAGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCACCGCCTGACACTCAAGGTAGAGAAATGGAAAGTGGAGGATA  400

seq1  AACCATGAGGGCTAAGAGAAAAAGCTAATCAAGTAATCAAATGTGAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAGGGCTAAGAGAAAAAGCTAATCAAGTAATCAAATGTGAAGTG  450

seq1  TTATTCCATGGGTTAAGAATTGTGATACGGTCTGAAATGGTAGAGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCATGGGTTAAGAATTGTGATACGGTCTGAAATGGTAGAGCAGAG  500

seq1  AGACCTACTAAGCCTGTAAAAGGTAGACCTCAAGAAGGACAGAGCAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTACTAAGCCTGTAAAAGGTAGACCTCAAGAAGGACAGAGCAGACA  550

seq1  AGAAAGAATGCCTTCATCAGCATAGAGGAAATAACAACAGAAAGGCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAATGCCTTCATCAGCATAGAGGAAATAACAACAGAAAGGCCATG  600

seq1  CACATAGGTTTTAAGATAATTACAATGTAGTAAGCAGAGAGGGAGGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGGTTTTAAGATAATTACAATGTAGTAAGCAGAGAGGGAGGTAAC  650

seq1  AGAAAATGATGGAGAGTCCCATAGGAGGAAGAGCACTGGGTGACAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGATGGAGAGTCCCATAGGAGGAAGAGCACTGGGTGACAAGAGA  700

seq1  ATGCAAGAGGAGAGCTGAGGGGCTAAAAGGGAGCTGATACAGTGAATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGAGGAGAGCTGAGGGGCTAAAAGGGAGCTGATACAGTGAATAAT  750

seq1  TCTTTATTCCAACTCACGGTGGTTACAAAGTTTGTTTATGCTATAGAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTCCAACTCACGGTGGTTACAAAGTTTGTTTATGCTATAGAAGG  800

seq1  TCATTAGAACTTTAGAAACTGTAGGTATTCCCTTGTAAGTACTCAGCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGAACTTTAGAAACTGTAGGTATTCCCTTGTAAGTACTCAGCCCA  850

seq1  GATTGTCATTATATGGCTGCTGAAACCAGGTCTACCTACACAGTTCTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTCATTATATGGCTGCTGAAACCAGGTCTACCTACACAGTTCTGAC  900

seq1  TTGGGACTTCCCAATAACTGTTTCTCTTCAACTCTTCCCTTTGAAAACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTTCCCAATAACTGTTTCTCTTCAACTCTTCCCTTTGAAAACTC  950

seq1  AGATGTTTTATCAAGATAAACGTAAGGTATTTTCTCTTGAAAACATAATG  1000
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  AGATGTTTTATCAAGATAAACGTAAGTATTTTTCTCTTGAAAACATAATG  1000

seq1  TACTTTCTCATAATAATATGATTTCTAATTTTTCTCACTTCTCAAGTTAT  1050
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  TACTTTCTCATAATAATATGATTTCTAA-TTTTCTCACTTCTCAAG-TAT  1048

seq1  CATAATAATGCTAATATTACTATTAACAGTAAAACGTAATA-TTGTCTGG  1099
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  CATAATAATGCTAATATTACTATTAACAGTAAAACGTAATATTTGTCTGC  1098

seq1  CTTGACAGAATTATATG-CTGCTCCTAATCCATAAACATAGGGACATCAC  1148
      ||||| ||||||||||| ||||||||||||||||||  ||||   ||| |
seq2  CTTGAAAGAATTATATGCCTGCTCCTAATCCATAAAACTAGGACAATCCC  1148

seq1  AAATATTTATTTGGCCTTAGAGTGAGCACCTAGGAAAATCCTAATCATGG  1198
      |||| ||||||||  ||||||||||| ||||  | |||| |||||| || 
seq2  AAATTTTTATTTG--CTTAGAGTGAG-ACCTTAGGAAATGCTAATCCTG-  1194

seq1  AATTACAGTC  1208
       | |||||||
seq2  -AATACAGTC  1203

seq1: chr4_76119748_76120321
seq2: B6Ng01-110O08.g_70_646 (reverse)

seq1  TTACGTAACT-AATTCTCACCTCAATCC-TGTAAGCACTGCATAGATGTC  48
      |||||||| | |||||||| |||||||| |||||||||||||||||||||
seq2  TTACGTAAATAAATTCTCAACTCAATCCTTGTAAGCACTGCATAGATGTC  50

seq1  AACCTGGGACACAAAAGTTAGG-TTAGCCATGGACCAGCAGCAAACTGCT  97
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACCTGGGACACAAAAGTTAGGTTTAGCCATGGACCAGCAGCAAACTGCT  100

seq1  CTTAGACAATTTGTCCGTGTGGATTACATCTCTCTCTCTCTCTCTCTCTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACAATTTGTCCGTGTGGATTACATCTCTCTCTCTCTCTCTCTCTC  150

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTT  200

seq1  TCTGTGTTTCTCCCTTTCTTTCTGTATTTCTTTCTTTTAGTTTGTTTTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTCTCCCTTTCTTTCTGTATTTCTTTCTTTTAGTTTGTTTTCT  250

seq1  TTTTTCTTTTATTAGATATTTTCTTTATTTACATTTCAAATGTTATTCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTATTAGATATTTTCTTTATTTACATTTCAAATGTTATTCCC  300

seq1  TTTTAGGTTTGTTTTTATTATTTTTATTTTTATGTATGTCTGTGTGTCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTTTGTTTTTATTATTTTTATTTTTATGTATGTCTGTGTGTCTG  350

seq1  TGAGTGAATAACATGTACATTGGTGCTAATATGTACCAGAAGAGAATATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAATAACATGTACATTGGTGCTAATATGTACCAGAAGAGAATATC  400

seq1  ATATTTTCTGGAACTGGAGTTAAAAAGGCATTTAAGATGTAAGAACAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTGGAACTGGAGTTAAAAAGGCATTTAAGATGTAAGAACAGAA  450

seq1  CTCAGGTCCTTTGGAAGAAAAACAGGTACTTTAACAATTAAATGCCAACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCCTTTGGAAGAAAAACAGGTACTTTAACAATTAAATGCCAACC  500

seq1  CAGGATCTAATTTCTTCTTCACATCCACTCTAACACAAATGCCTAGAGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTAATTTCTTCTTCACATCCACTCTAACACAAATGCCTAGAGGC  550

seq1  TAATACAGCAGCTGTTCTTAGGAATTC  574
      |||||||||||||||||||||||||||
seq2  TAATACAGCAGCTGTTCTTAGGAATTC  577