BAC Information

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BAC

Clone NameB6Ng01-111B18
Chromosome4 (Build37)
Map Location 28,644,458 - 28,800,604
singlet/doubletdoublet
Overlap geneEpha7
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
Downstream geneLOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111B18.bB6Ng01-111B18.g
ACCDH917545DH917546
length9531,040
definitionDH917545|Mus musculus domesticus DNA, BAC clone: B6Ng01-111B18, 5' end.DH917546|Mus musculus domesticus DNA, BAC clone: B6Ng01-111B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,644,458 - 28,645,211)(28,799,549 - 28,800,604)
sequence
gaattcactgctggattttagttttcctttagtgtcctctggtttcaact
tatataaacagtattggtttgtatagttttgtttcattttgttgttctat
cttcaaagtaaatggtatgagatgtaggcacagatgtttgatataaccct
aatgcatagtcacaaatttaaattttaaatcatgatttttgtccccaaac
tctattttatgttttataattaattaattaattaatctgcatcctgatgg
atagttgccctcccacctccaagtctttccccatcacttcctcttccctc
tccactcctccgttcctcttcaaagaagtggaagcctcccaggaatatca
gtcatccttggcacagcaagtacaataagactatgtacttctttacctat
tgaggctacaagaagcatcccaggaaaatgtgtcccaaagacaggcaaca
gtcagagacaactcctattcccattttaggagttacacataaagaccaag
ctatacatacaactgctagttacagtatgtgctaagggcctacgtcagta
ctatacatgttctctgattggcaattcagtctctatgggcctttagggac
caggctagttgattctgttggttttcttgtggtgtccttgactcatctgt
tttctgcgatcttttctccaactcttctgcaaggccctaatgtggttttg
atctaccgcttgtattatgttatttgggtttccaaaactgcatgagaatc
cccatgtaagatgctgagggtccttgcccacagttggttttgaattggca
aataaaagcttcctgaggccagtgacttggcaatgaaacagaggtgggga
ttttagattgtggcaagagggagtgagatagaaaggaggattagagaact
gtaatactgaaaaagagtaaggttcagtatgagaggtgcagaagaaagag
cat
gaattccttcccagtgctctccaggacaacatagcagtccatgggctata
tttaaaaaaaaaaaaagtatcgtgtatgtatacacgatacagattcctca
ccacaggtccatatgcagttgtcattatactattgcaatttaaacaggca
gtagggtgggaaaattagcaaagaatggaaggctagagcaggctccttga
atgttgattggtttcagattccgcagaagaccacaaagagcgtcttataa
gcctactgcaatgttcgccaaacttcatcatctggtgcagggccactttt
agtacagttgataaccgagtcctcagcgacatctactaaatatcgactgc
acagcatctttcaacagtgtcagttgagaaaagctccaatttctgaaacg
ttttccagtaataagatttttttctggtggttttagaaatgtctggcttc
tccaactgacttcctgacatgcattttttcagaacatattaactgtaacc
aaagctgactaaggaaggcatttcaattatcagttaaaaaaaaataatga
aagctggtattagactaagctacaagttcataattatcatttctttcgaa
atactcattaaattagctaagtgtgtgttataaaatatggatggtcacaa
gatcccacatctactgatgaacttaaaatacactaatgcaaaatttaaaa
agcaaagttcagatatttcaaaaaatctttgaatataaatgaccccaata
ggaccatagggactggcactactaggaggtgtggccttgttggagtaggt
gtggtttccttggaagaagtgtatcactagagcgtgggctttggagctca
aacccctttacttcctgctgcctgaagttctagatgagaactctcagctt
cttcttcagcatcatgactgctgcatgctgccatgattcccatatgacta
catggactaagcactaaattgtaagctatccctattgttctcacttatag
aagtgcatgtcagatctcttccagcattaaaccctagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28644458_28645211
seq2: B6Ng01-111B18.b_43_796

seq1  GAATTCACTGCTGGATTTTAGTTTTCCTTTAGTGTCCTCTGGTTTCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCTGGATTTTAGTTTTCCTTTAGTGTCCTCTGGTTTCAACT  50

seq1  TATATAAACAGTATTGGTTTGTATAGTTTTGTTTCATTTTGTTGTTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAACAGTATTGGTTTGTATAGTTTTGTTTCATTTTGTTGTTCTAT  100

seq1  CTTCAAAGTAAATGGTATGAGATGTAGGCACAGATGTTTGATATAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGTAAATGGTATGAGATGTAGGCACAGATGTTTGATATAACCCT  150

seq1  AATGCATAGTCACAAATTTAAATTTTAAATCATGATTTTTGTCCCCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATAGTCACAAATTTAAATTTTAAATCATGATTTTTGTCCCCAAAC  200

seq1  TCTATTTTATGTTTTATAATTAATTAATTAATTAATCTGCATCCTGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTATGTTTTATAATTAATTAATTAATTAATCTGCATCCTGATGG  250

seq1  ATAGTTGCCCTCCCACCTCCAAGTCTTTCCCCATCACTTCCTCTTCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGCCCTCCCACCTCCAAGTCTTTCCCCATCACTTCCTCTTCCCTC  300

seq1  TCCACTCCTCCGTTCCTCTTCAAAGAAGTGGAAGCCTCCCAGGAATATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCTCCGTTCCTCTTCAAAGAAGTGGAAGCCTCCCAGGAATATCA  350

seq1  GTCATCCTTGGCACAGCAAGTACAATAAGACTATGTACTTCTTTACCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCTTGGCACAGCAAGTACAATAAGACTATGTACTTCTTTACCTAT  400

seq1  TGAGGCTACAAGAAGCATCCCAGGAAAATGTGTCCCAAAGACAGGCAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTACAAGAAGCATCCCAGGAAAATGTGTCCCAAAGACAGGCAACA  450

seq1  GTCAGAGACAACTCCTATTCCCATTTTAGGAGTTACACATAAAGACCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGACAACTCCTATTCCCATTTTAGGAGTTACACATAAAGACCAAG  500

seq1  CTATACATACAACTGCTAGTTACAGTATGTGCTAAGGGCCTACGTCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATACAACTGCTAGTTACAGTATGTGCTAAGGGCCTACGTCAGTA  550

seq1  CTATACATGTTCTCTGATTGGCAATTCAGTCTCTATGGGCCTTTAGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATGTTCTCTGATTGGCAATTCAGTCTCTATGGGCCTTTAGGGAC  600

seq1  CAGGCTAGTTGATTCTGTTGGTTTTCTTGTGGTGTCCTTGACTCATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGTTGATTCTGTTGGTTTTCTTGTGGTGTCCTTGACTCATCTGT  650

seq1  TTTCTGCGATCTTTTCTCCAACTCTTCTGCAAGGCCCTAATGTGGTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCGATCTTTTCTCCAACTCTTCTGCAAGGCCCTAATGTGGTTTTG  700

seq1  ATCTACCGCTTGTATTATGTTATTTGGGTTTCCAAAACTGCATGAGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCGCTTGTATTATGTTATTTGGGTTTCCAAAACTGCATGAGAATC  750

seq1  CCCA  754
      ||||
seq2  CCCA  754

seq1: chr4_28799549_28800604
seq2: B6Ng01-111B18.g_68_1107 (reverse)

seq1  TGTCTTAGGGTTTTTATTGCTGTGAAGAGATCTTGACCATGGCAACTTCT  50
      |||| |||||  |||| ||||| ||||||||| ||| ||||   ||||||
seq2  TGTC-TAGGG--TTTAATGCTG-GAAGAGATC-TGA-CATG--CACTTCT  42

seq1  ATAAGTGAGAACAATTAGGGATAGCTTACAATTTTAGTGCTTTAGTCCAT  100
      |||||||||||||| |||||||||||||||| |||||||| |||||||| 
seq2  ATAAGTGAGAACAA-TAGGGATAGCTTACAA-TTTAGTGC-TTAGTCCA-  88

seq1  TGTAGTCATATTGGGAATCATGGCAGCATGCAGGCAGTCATGATGCTGAA  150
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  TGTAGTCATA-TGGGAATCATGGCAGCATGCA-GCAGTCATGATGCTGAA  136

seq1  GAAGAAGCTGAGAGTTCTTCATCTAGAACTTCAGGCAGCAGGAAGTAAAG  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAGAAGCTGAGAGTTC-TCATCTAGAACTTCAGGCAGCAGGAAGTAAAG  185

seq1  GGGTTTGAGCCTCCAAAGCCCACGCTCTAGTGATACACTTCTTCCAAGGA  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGAG-CTCCAAAGCCCACGCTCTAGTGATACACTTCTTCCAAGGA  234

seq1  AACCACACCTACTCCAACAAGGCCACACCTCCTAGTAGTGCCAGTCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACCTACTCCAACAAGGCCACACCTCCTAGTAGTGCCAGTCCCTA  284

seq1  TGGTCCTATTGGGGTCATTTATATTCAAAGATTTTTTGAAATATCTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTATTGGGGTCATTTATATTCAAAGATTTTTTGAAATATCTGAAC  334

seq1  TTTGCTTTTTAAATTTTGCATTAGTGTATTTTAAGTTCATCAGTAGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTTAAATTTTGCATTAGTGTATTTTAAGTTCATCAGTAGATGT  384

seq1  GGGATCTTGTGACCATCCATATTTTATAACACACACTTAGCTAATTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTTGTGACCATCCATATTTTATAACACACACTTAGCTAATTTAAT  434

seq1  GAGTATTTCGAAAGAAATGATAATTATGAACTTGTAGCTTAGTCTAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTCGAAAGAAATGATAATTATGAACTTGTAGCTTAGTCTAATAC  484

seq1  CAGCTTTCATTATTTTTTTTTAACTGATAATTGAAATGCCTTCCTTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCATTATTTTTTTTTAACTGATAATTGAAATGCCTTCCTTAGTC  534

seq1  AGCTTTGGTTACAGTTAATATGTTCTGAAAAAATGCATGTCAGGAAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGTTACAGTTAATATGTTCTGAAAAAATGCATGTCAGGAAGTCA  584

seq1  GTTGGAGAAGCCAGACATTTCTAAAACCACCAGAAAAAAATCTTATTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGAAGCCAGACATTTCTAAAACCACCAGAAAAAAATCTTATTACT  634

seq1  GGAAAACGTTTCAGAAATTGGAGCTTTTCTCAACTGACACTGTTGAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACGTTTCAGAAATTGGAGCTTTTCTCAACTGACACTGTTGAAAGA  684

seq1  TGCTGTGCAGTCGATATTTAGTAGATGTCGCTGAGGACTCGGTTATCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGCAGTCGATATTTAGTAGATGTCGCTGAGGACTCGGTTATCAAC  734

seq1  TGTACTAAAAGTGGCCCTGCACCAGATGATGAAGTTTGGCGAACATTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAAAAGTGGCCCTGCACCAGATGATGAAGTTTGGCGAACATTGCA  784

seq1  GTAGGCTTATAAGACGCTCTTTGTGGTCTTCTGCGGAATCTGAAACCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTTATAAGACGCTCTTTGTGGTCTTCTGCGGAATCTGAAACCAAT  834

seq1  CAACATTCAAGGAGCCTGCTCTAGCCTTCCATTCTTTGCTAATTTTCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTCAAGGAGCCTGCTCTAGCCTTCCATTCTTTGCTAATTTTCCCA  884

seq1  CCCTACTGCCTGTTTAAATTGCAATAGTATAATGACAACTGCATATGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTGCCTGTTTAAATTGCAATAGTATAATGACAACTGCATATGGAC  934

seq1  CTGTGGTGAGGAATCTGTATCGTGTATACATACACGATACTTTTTTTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGAGGAATCTGTATCGTGTATACATACACGATACTTTTTTTTTT  984

seq1  TTTAAATATAGCCCATGGACTGCTATGTTGTCCTGGAGAGCACTGGGAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATAGCCCATGGACTGCTATGTTGTCCTGGAGAGCACTGGGAAG  1034

seq1  GAATTC  1056
      ||||||
seq2  GAATTC  1040