BAC Information

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BAC

Clone NameB6Ng01-111C07
Chromosome4 (Build37)2 (Build37)
Map Location 67,252,791 - 67,253,21795,744,818 - 95,745,954
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667499, Tlr4, LOC100039379, Hmgb1-rs18
Downstream geneLOC433715, Tcp1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111C07.bB6Ng01-111C07.g
ACCDH917571DH917572
length9741,118
definitionDH917571|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C07, 5' end.DH917572|Mus musculus domesticus DNA, BAC clone: B6Ng01-111C07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,252,791 - 67,253,217)(95,744,818 - 95,745,954)
sequence
gaattccagtgaggcgaatggtagaaatacactgtgaccgatcacaaagt
gacttctgagccaaacttctgtaggaaaaataaatgcataaataaaatga
gtactatcatcgggataggcaacttaatgaacatttgcttcagtttcccc
atctgcaaaataatgaaagtaatactatcattatccaaagttactctaag
gataaatgagtttatatatgataaggtttagaatttgagccatatggtaa
ctgatctagaaatgtcagatcatctttttatgttcattttatacatggaa
attctggaagacaaaaaagttaagtaacttatctaccacttagaaaaaga
cttaaccaacccttttggaggttgatgtaagaagatattcatcattttga
agccagcccgggctgtagagcatgcttcaggccaatttatgtcataaagc
aagattctgagtataaaaagctgacaggaccctgatatagctggtttttg
tgaggctatgccagtgcctggcaaatacaaaagtaggtgccaacagtcat
ctattggatggaacacagggcccccaatggaggagctagagaaagtagcc
aaggagctgaagggatctgcaatcctataggcggaacaacaatatgaact
aacctgtaccgcccagagctcatgtctctagctgcacatgtagcagaaga
tgaactagtcggcgataattgggagaagatgcccttggtcttgcgaagac
tatatgccccagtacaggggaatgaggcaggagtatttgggttgggtagc
agggcaggagagggtatagaggactttctggatagcatttgaaatgtaaa
tgaaaaatatttaataaaaaaaaaaaacaagcagaaaagcaaacagcaaa
tatatacataaagggtttacttaaacccaggcactatggctccatagttt
ctattcttatcctcatgcacagat
gaattcattaatctgtatgttaagtactttgggtggtgttcatttaacaa
ttttattgattttacagttacagattttacactgtgacttagctattaat
aacactattgtttttctaaggtatctgtttctaatctttgtgttttagct
atctggcttttttttcttgaaaagagtttattatgtaacagtattttcag
aggaaaacattatgaataacttcaaagaaacaggttcttctagaaacact
atgatgcacatatgaaagagaatactgcggcatcacacacaagatctata
gaggttccagttagtcaaaattccagcactgaaatggtaaagtcatcaca
gagctccacccctaaccaagaagcttcgtgccactgatatcttctgggga
aaacaaaaagagttatatccaatgaacagtatgtgtgtgccttttgattt
gctttatttactagttttcctcagcagccactttggggcatttatttcct
atgaaatatcctgaaacttaaacaatgcagtaactgacagcaatgagaac
cgtgactaattagtggcatttgtgcgaaaagatttcctgaatgaatgagt
cagtgaaagcacatgataacaaaagaattagtgaaaactatttcaaattt
ttcctttagttttttcaataacataaaattggaaattcggtcatcagggc
cattggctactgatattattaagacctatgaatggtatttgacaggataa
aaatcaatcaccattaacaatcatcataaaagtcatcattaaagaatgaa
aacccagattagaggaacatgggcctattctggagctatctctcgatgct
attagagagtggtgtacaatagcagtgtctgtgattaataacaacatgaa
cctggaggacactaatcacatgaaataggtcagctggtcatccaaacaca
catgatctcacttgtatctacaatataaagggttacatttttagaatcag
agctttaccatgactggggatagaactgagatgtagagaaagacgttaga
gaccctcctgagggattcatccatacgttacaaacccaaacctattgtga
atgcagatgcatgctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67252791_67253217
seq2: B6Ng01-111C07.b_124_639

seq1  AAAATAAATGCATAAA----------ACAAGCAT-----TAGAAACAATT  35
      ||||||||||||||||          || | |||     |||  | | ||
seq2  AAAATAAATGCATAAATAAAATGAGTACTATCATCGGGATAGGCA-ACTT  49

seq1  ATTGTACACT------------------TGTATTATAATTAAAGTGACTT  67
      | || ||| |                  || |  ||||| |||||     
seq2  AATGAACATTTGCTTCAGTTTCCCCATCTGCAAAATAATGAAAGT-----  94

seq1  CAAGAATAT-TTTCTACCTACTTAC----ATG--CAATGACTT----TAT  106
       || | |||  || | |  | ||||    | |   ||||| ||    |||
seq2  -AATACTATCATTATCCAAAGTTACTCTAAGGATAAATGAGTTTATATAT  143

seq1  GAAGATCTCTCACCTCTGAAAAGAAATA----AACAGATTAATAAAT---  149
      ||  |  | |    | ||   ||  |||    ||| |||  | ||||   
seq2  GATAAGGTTTAGAATTTG---AGCCATATGGTAACTGATCTAGAAATGTC  190

seq1  AGA-CAAAGATAAATGGTGTCCCATTGGAGGAGTTACAGAGACAAAGTTT  198
      ||| ||    |  ||| |    ||||       ||| | |   ||| | |
seq2  AGATCATCTTTTTATGTT----CATT-------TTATACATGGAAATTCT  229

seq1  GGAGCTGAGATGAAAG----------GATGGACCATGTAGAGACTGCCAT  238
      |||   || |  ||||           ||  ||||  |||| |  | | |
seq2  GGA--AGACAAAAAAGTTAAGTAACTTATCTACCACTTAGAAAAAGACTT  277

seq1  ATCC-----------AGG--GAT-CCACCCCATAATCAGCATCT--AAAC  272
      | ||           |||  |||   |    ||| ||| ||| |  || |
seq2  AACCAACCCTTTTGGAGGTTGATGTAAGAAGATATTCATCATTTTGAAGC  327

seq1  --------GCTG-ACACCAT----------------TG-CATACACTAGC  296
              |||| | | |||                || ||||    |||
seq2  CAGCCCGGGCTGTAGAGCATGCTTCAGGCCAATTTATGTCATA---AAGC  374

seq1  AAGATT----TTAT-------CGAAAGGACCCAGATGTAGCTGTCTCTTG  335
      ||||||     |||        || ||||||| ||| ||||||  | |||
seq2  AAGATTCTGAGTATAAAAAGCTGACAGGACCCTGATATAGCTGGTTTTTG  424

seq1  TGAGACTATGCTGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAG  385
      |||| ||||||  | |||| ||||| ||| |||| | |||  ||||||| 
seq2  TGAGGCTATGCCAGTGCCTGGCAAATACAAAAGTAGGTGCCAACAGTCAT  474

seq1  CTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGA  427
      ||| |||||||| |||||||| ||||||||||||||||||||
seq2  CTATTGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGA  516

seq1: chr2_95744818_95745954
seq2: B6Ng01-111C07.g_68_1185

seq1  GAATTCATTAATCTGTATGTTAAGTACTTTGGGTGGTGTTCATTTAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATCTGTATGTTAAGTACTTTGGGTGGTGTTCATTTAACAA  50

seq1  TTTTATTGATTTTACAGTTACAGATTTTACACTGTGACTTAGCTATTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGATTTTACAGTTACAGATTTTACACTGTGACTTAGCTATTAAT  100

seq1  AACACTATTGTTTTTCTAAGGTATCTGTTTCTAATCTTTGTGTTTTAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATTGTTTTTCTAAGGTATCTGTTTCTAATCTTTGTGTTTTAGCT  150

seq1  ATCTGGCTTTTTTTTCTTGAAAAGAGTTTATTATGTAACAGTATTTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTTTTTTTTCTTGAAAAGAGTTTATTATGTAACAGTATTTTCAG  200

seq1  AGGAAAACATTATGAATAACTTCAAAGAAACAGGTTCTTCTAGAAACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACATTATGAATAACTTCAAAGAAACAGGTTCTTCTAGAAACACT  250

seq1  ATGATGCACATATGAAAGAGAATACTGCGGCATCACACACAAGATCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCACATATGAAAGAGAATACTGCGGCATCACACACAAGATCTATA  300

seq1  GAGGTTCCAGTTAGTCAAAATTCCAGCACTGAAATGGTAAAGTCATCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCCAGTTAGTCAAAATTCCAGCACTGAAATGGTAAAGTCATCACA  350

seq1  GAGCTCCACCCCTAACCAAGAAGCTTCGTGCCACTGATATCTTCTGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCACCCCTAACCAAGAAGCTTCGTGCCACTGATATCTTCTGGGGA  400

seq1  AAACAAAAAGAGTTATATCCAATGAACAGTATGTGTGTGCCTTTTGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAGAGTTATATCCAATGAACAGTATGTGTGTGCCTTTTGATTT  450

seq1  GCTTTATTTACTAGTTTTCCTCAGCAGCCACTTTGGGGCATTTATTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTTACTAGTTTTCCTCAGCAGCCACTTTGGGGCATTTATTTCCT  500

seq1  ATGAAATATCCTGAAACTTAAACAATGCAGTAACTGACAGCAATGAGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATATCCTGAAACTTAAACAATGCAGTAACTGACAGCAATGAGAAC  550

seq1  CGTGACTAATTAGTGGCATTTGTGCGAAAAGATTTCCTGAATGAATGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTAATTAGTGGCATTTGTGCGAAAAGATTTCCTGAATGAATGAGT  600

seq1  CAGTGAAAGCACATGATAACAAAAGAATTAGTGAAAACTATTTCAAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAAGCACATGATAACAAAAGAATTAGTGAAAACTATTTCAAATTT  650

seq1  TTCCTTTAGTTTTTTCAATAACATAAAATTGGAAATTCGGTCATCAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAGTTTTTTCAATAACATAAAATTGGAAATTCGGTCATCAGGGC  700

seq1  CATTGGCTACTGATATTATTAAGACCTATGAATGGTATTTGACAGGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCTACTGATATTATTAAGACCTATGAATGGTATTTGACAGGATAA  750

seq1  AAATCAATCACCATTAACAATCATCATAAAAGTCATCATTAAAGAATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATCACCATTAACAATCATCATAAAAGTCATCATTAAAGAATGAA  800

seq1  AACCCAGATTAGAGGAACATGGGCCTATTCTGGAGCTATCTCTCGATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGATTAGAGGAACATGGGCCTATTCTGGAGCTATCTCTCGATGCT  850

seq1  ATTAGAGAGTGGTGTACAATAGCAGTGTCTGTGATTAATAACAACATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGAGTGGTGTACAATAGCAGTGTCTGTGATTAATAACAACATGAA  900

seq1  CCTGGAGGACACTAATCACATGAAATAGGTCAGGCTGGTCATCCAAACAC  950
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  CCTGGAGGACACTAATCACATGAAATAGGTCA-GCTGGTCATCCAAACA-  948

seq1  CACATGATCTCACTTGTATCTACAATATAAAGGGTTACATTTTTAGAAAT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACATGATCTCACTTGTATCTACAATATAAAGGGTTACATTTTTAG-AAT  997

seq1  CAAGAGCCTTTACCAAGGACTGGGGATAGAACTGAGGATGTAGAAGAAAG  1050
      | |||| ||||||| | |||||||||||||||||| ||||||| ||||||
seq2  C-AGAG-CTTTACC-ATGACTGGGGATAGAACTGA-GATGTAG-AGAAAG  1042

seq1  ACGTTAGAGACCCTCCTGAGGGGATTCATCCCATATACGGTTACCAAACC  1100
      ||||||||||||||||||| |||||||||||   |||| |||| ||||||
seq2  ACGTTAGAGACCCTCCTGA-GGGATTCATCC---ATAC-GTTA-CAAACC  1086

seq1  CAGACACTATTGTGGATGCCAAGAAATGCATGCTCAA  1137
      || || |||||||| ||||    | ||||||||||||
seq2  CAAAC-CTATTGTGAATGC----AGATGCATGCTCAA  1118