BAC Information

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BAC

Clone NameB6Ng01-111G09
Chromosome4 (Build37)
Map Location 99,326,944 - 99,471,206
singlet/doubletdoublet
Overlap geneAlg6, Itgb3bp
Upstream geneInadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3
Downstream geneBC020077, Pgm2, Ror1, Ube2u, LOC277707, LOC621573, Cachd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111G09.bB6Ng01-111G09.g
ACCDH917754DH917755
length1,0871,073
definitionDH917754|Mus musculus domesticus DNA, BAC clone: B6Ng01-111G09, 5' end.DH917755|Mus musculus domesticus DNA, BAC clone: B6Ng01-111G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,470,108 - 99,471,206)(99,326,944 - 99,328,026)
sequence
gaattcttggtattaacacgtacaggtacacacacacacacacttcctga
aagctatagaactgttgtcaaaaagaaatatattatctacagttgcaatg
tttagacatttggcaattggataaaataatttttggtgaaactagggaaa
cagatggacataaacgtacatagagtagtaactttcatttcttgtacata
cacagtgaaatcattgtaggcaataagttcttgcagaagttgagtagggc
ttgggtaaatgtcatagtttatgactgaatacatataaacaggtgaagac
tcaatatggagaggtaatggtaactacctgataaagagacttagaattct
tttcatcccacaggaaggattgcattagagacataacagtgcaatagttg
gatttataaaggtattttttaaaagattctgtttacaattttggcaactg
cagatatataaaataaatgcctttgttcccccaaacaatgttaactatga
aacattttgacctatagtttctagaacaaataccaaggttacttttaaag
gtgacactgctgtgggtgcattaaagaacacttgactatagagatttatg
gaattgtttgaagacagcgtccaagctaaaattgtttcgagccttgagac
cttttctttatgctctgagttcatcccgtgtactcaacactcttgatttc
agattcttgcacctgtctcaatttttttctggaacagggttttgtgtttc
tcaagatggcttcatctgctcagtgtagctaaggatgtccttgaacttct
gaacttttgccttcacctcctgattgctgagatttataggcattcaccat
cgtgcccagattcttcttcctagggattggaacccgggctctgtgcatgc
taggcaagcactctgcctgctgaagctacatccccagctccctttcatgc
cttttctgtctcctatttcagtcccatcctcctgctcctaagaagctttc
tgtaatagttactgcaggcccagccccttgatagttcttctttttgattt
ctcacttacctaactttaactaacctcatctcaggct
gaattcacttttagcctcaagaagctgctgatccaaggcttctaaatgac
attggataacaggggcctcattccatccctgatcctttgttacttataaa
attactcgctcatatttccgcgcatagcagcaataccggccgagcctgag
cacgcagcctgacactcggacacaagctgccgcttgagatctgcagtgcc
ttttccagcgacgcattaggcagcgcggtgtagaaaccacggcaactttc
cttccagccactttcgctctatcaacaacagcctcttccccgtgtagtta
gaggatgggacatctcatgcccaaacaccagcggccagtgtttattgaaa
gtcctgatgtaataccgggaaagtagagcccagccatacccttggaaaag
aattgagcttacgctgtttaaatggtgaagatttagagaagacgatgaaa
ttttttttttaaatgtagataaatgtactcaagcacttagtaggttggag
caagctttaaacacaggtttgatgtttttagacacgcgataaaaggtgat
gaaatccctctaaaactgggattttaaaacagtgcgattgccacctgctt
tttattacagctttaaaaaaagagaaattaaaagaaaaaaagggaataaa
taaaggacacaggttgtgtataaaggaaagatgctagccttttagttaca
ctccgatttaagcattcattcttcgcttcctcagcaaggatttccagaca
ttcaattcactctcgaagcctgggactcctagtgtgacctcggggtggag
ttcccaagtaggcctctcacccagtcccttgcgggaatgtagggaggatt
ctgaaagttcaggggaaaaaaaaaaaaaaaaaaaagtgaaatgctcaata
ctagctgagcgaatgtagctgcgatggccggatgtggccctgtaaggggc
gacgaacagatggaaaactcccgagctgtttttgaagctccaatgccaga
ctaaacccctcgccccaaccctcccagacttttctagcagctcttgaaca
acccccctgacaccatcttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_99470108_99471206
seq2: B6Ng01-111G09.b_41_1127 (reverse)

seq1  AGCCTGAGATGAGGTTTTAAGTTAAAGTTAAGTTAAAGTGAGAAATTCAA  50
      ||||||||||||||||   ||||||||||| ||  |||||||||| ||||
seq2  AGCCTGAGATGAGGTT---AGTTAAAGTTAGGT--AAGTGAGAAA-TCAA  44

seq1  AAAGAAGAAACTATCAAAGAGGGCTGGGGCTGCAGTAACCTATTACAGAA  100
      ||||||| |||||||||   |||||||| ||||||||| |||||||||||
seq2  AAAGAAG-AACTATCAA--GGGGCTGGGCCTGCAGTAA-CTATTACAGAA  90

seq1  AGCTTCTTAGGAGCAGGAAGGATGGGACTGAAATAGGAGAACAGAAAAGG  150
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  AGCTTCTTAGGAGCAGG-AGGATGGGACTGAAATAGGAG-ACAGAAAAGG  138

seq1  CATGAAAGGGAGCTGGGGATGTAGCTTCAGCAGGCAGAGTGCTTGCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGGGAGCTGGGGATGTAGCTTCAGCAGGCAGAGTGCTTGCCTAG  188

seq1  CATGCACAGAGCCCGGGTTCCAATCCCTAGGAAGAAGAATCTGGGCACGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAGAGCCCGGGTTCCAATCCCTAGGAAGAAGAATCTGGGCACGA  238

seq1  TGGTGAATGCCTATAAATCTCAGCAATCAGGAGGTGAAGGCAAAAGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAATGCCTATAAATCTCAGCAATCAGGAGGTGAAGGCAAAAGTTCA  288

seq1  GAAGTTCAAGGACATCCTTAGCTACACTGAGCAGATGAAGCCATCTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCAAGGACATCCTTAGCTACACTGAGCAGATGAAGCCATCTTGAG  338

seq1  AAACACAAAACCCTGTTCCAGAAAAAAATTGAGACAGGTGCAAGAATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAAACCCTGTTCCAGAAAAAAATTGAGACAGGTGCAAGAATCTG  388

seq1  AAATCAAGAGTGTTGAGTACACGGGATGAACTCAGAGCATAAAGAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGAGTGTTGAGTACACGGGATGAACTCAGAGCATAAAGAAAAGG  438

seq1  TCTCAAGGCTCGAAACAATTTTAGCTTGGACGCTGTCTTCAAACAATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGCTCGAAACAATTTTAGCTTGGACGCTGTCTTCAAACAATTCC  488

seq1  ATAAATCTCTATAGTCAAGTGTTCTTTAATGCACCCACAGCAGTGTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTCTATAGTCAAGTGTTCTTTAATGCACCCACAGCAGTGTCACC  538

seq1  TTTAAAAGTAACCTTGGTATTTGTTCTAGAAACTATAGGTCAAAATGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTAACCTTGGTATTTGTTCTAGAAACTATAGGTCAAAATGTTT  588

seq1  CATAGTTAACATTGTTTGGGGGAACAAAGGCATTTATTTTATATATCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTAACATTGTTTGGGGGAACAAAGGCATTTATTTTATATATCTGC  638

seq1  AGTTGCCAAAATTGTAAACAGAATCTTTTAAAAAATACCTTTATAAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCAAAATTGTAAACAGAATCTTTTAAAAAATACCTTTATAAATCC  688

seq1  AACTATTGCACTGTTATGTCTCTAATGCAATCCTTCCTGTGGGATGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTGCACTGTTATGTCTCTAATGCAATCCTTCCTGTGGGATGAAAA  738

seq1  GAATTCTAAGTCTCTTTATCAGGTAGTTACCATTACCTCTCCATATTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTCTCTTTATCAGGTAGTTACCATTACCTCTCCATATTGAG  788

seq1  TCTTCACCTGTTTATATGTATTCAGTCATAAACTATGACATTTACCCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACCTGTTTATATGTATTCAGTCATAAACTATGACATTTACCCAAG  838

seq1  CCCTACTCAACTTCTGCAAGAACTTATTGCCTACAATGATTTCACTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTCAACTTCTGCAAGAACTTATTGCCTACAATGATTTCACTGTGT  888

seq1  ATGTACAAGAAATGAAAGTTACTACTCTATGTACGTTTATGTCCATCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAAGAAATGAAAGTTACTACTCTATGTACGTTTATGTCCATCTGT  938

seq1  TTCCCTAGTTTCACCAAAAATTATTTTATCCAATTGCCAAATGTCTAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAGTTTCACCAAAAATTATTTTATCCAATTGCCAAATGTCTAAAC  988

seq1  ATTGCAACTGTAGATAATATATTTCTTTTTGACAACAGTTCTATAGCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAACTGTAGATAATATATTTCTTTTTGACAACAGTTCTATAGCTTT  1038

seq1  CAGGAAGTGTGTGTGTGTGTGTACCTGTACGTGTTAATACCAAGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTGTGTGTGTGTGTGTACCTGTACGTGTTAATACCAAGAATTC  1087

seq1: chr4_99326944_99328026
seq2: B6Ng01-111G09.g_68_1140

seq1  GAATTCACTTTTAGCCTCAAGAAGCTGCTGATCCAAGGCTTCTAAATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTAGCCTCAAGAAGCTGCTGATCCAAGGCTTCTAAATGAC  50

seq1  ATTGGATAACAGGGGCCTCATTCCATCCCTGATCCTTTGTTACTTATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATAACAGGGGCCTCATTCCATCCCTGATCCTTTGTTACTTATAAA  100

seq1  ATTACTCGCTCATATTTCCGCGCATAGCAGCAATACCGGCCGAGCCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCGCTCATATTTCCGCGCATAGCAGCAATACCGGCCGAGCCTGAG  150

seq1  CACGCAGCCTGACACTCGGACACAAGCTGCCGCTTGAGATCTGCAGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAGCCTGACACTCGGACACAAGCTGCCGCTTGAGATCTGCAGTGCC  200

seq1  TTTTCCAGCGACGCATTAGGCAGCGCGGTGTAGAAACCACGGCAACTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGCGACGCATTAGGCAGCGCGGTGTAGAAACCACGGCAACTTTC  250

seq1  CTTCCAGCCACTTTCGCTCTATCAACAACAGCCTCTTCCCCGTGTAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCCACTTTCGCTCTATCAACAACAGCCTCTTCCCCGTGTAGTTA  300

seq1  GAGGATGGGACATCTCATGCCCAAACACCAGCGGCCAGTGTTTATTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGGGACATCTCATGCCCAAACACCAGCGGCCAGTGTTTATTGAAA  350

seq1  GTCCTGATGTAATACCGGGAAAGTAGAGCCCAGCCATACCCTTGGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGATGTAATACCGGGAAAGTAGAGCCCAGCCATACCCTTGGAAAAG  400

seq1  AATTGAGCTTACGCTGTTTAAATGGTGAAGATTTAGAGAAGACGATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGCTTACGCTGTTTAAATGGTGAAGATTTAGAGAAGACGATGAAA  450

seq1  TTTTTTTTTTAAATGTAGATAAATGTACTCAAGCACTTAGTAGGTTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAATGTAGATAAATGTACTCAAGCACTTAGTAGGTTGGAG  500

seq1  CAAGCTTTAAACACAGGTTTGATGTTTTTAGACACGCGATAAAAGGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTAAACACAGGTTTGATGTTTTTAGACACGCGATAAAAGGTGAT  550

seq1  GAAATCCCTCTAAAACTGGGATTTTAAAACAGTGCGATTGCCACCTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCCTCTAAAACTGGGATTTTAAAACAGTGCGATTGCCACCTGCTT  600

seq1  TTTATTACAGCTTTAAAAAAAGAGAAATTAAAAGAAAAAAAGGGAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACAGCTTTAAAAAAAGAGAAATTAAAAGAAAAAAAGGGAATAAA  650

seq1  TAAAGGACACAGGTTGGGTATAAAGGAAAGATGCTAGCCTTTTAGTTACA  700
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAAGGACACAGGTTGTGTATAAAGGAAAGATGCTAGCCTTTTAGTTACA  700

seq1  CTCCGATTTAAGCATTCATTCTTCGCTTCCTCAGGCAAGGATTTCCAGAC  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCCGATTTAAGCATTCATTCTTCGCTTCCTCA-GCAAGGATTTCCAGAC  749

seq1  ATTCAATTCACTCTCGAAGCCTGGGACTCCTAGTGTGACCTCGGGGTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTCACTCTCGAAGCCTGGGACTCCTAGTGTGACCTCGGGGTGGA  799

seq1  GTTCCCAAGTAGGCCTCTCACCCAGTCCCTTGCGGGAATGTAGGGAGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAAGTAGGCCTCTCACCCAGTCCCTTGCGGGAATGTAGGGAGGAT  849

seq1  TCTGAAGGTTCAGGGGAAAAAAAAAAAAAAAAAAAAAGTGAAATGCTC-A  899
      |||||| ||||||||| ||||||||||||||||||||||||||||||| |
seq2  TCTGAAAGTTCAGGGG-AAAAAAAAAAAAAAAAAAAAGTGAAATGCTCAA  898

seq1  TACTAGCTGAGCGGAATGTAGCTGCGATGG-CGGATGTGG-CCTGTAGGG  947
      |||||||||||| ||||||||||||||||| ||||||||| |||||| ||
seq2  TACTAGCTGAGC-GAATGTAGCTGCGATGGCCGGATGTGGCCCTGTAAGG  947

seq1  GGCGACGAACAGATGGAAAACTCCCGAGCTGTTTTTGAAGCTCCAATGCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACGAACAGATGGAAAACTCCCGAGCTGTTTTTGAAGCTCCAATGCC  997

seq1  AGACCTAAACCCCTCGCCCCCAACCCCTCCCCAGACCTTTTCCTAGCCAG  1047
      ||| |||||||||||| |||||||||   |||||||  ||| |||||   
seq2  AGA-CTAAACCCCTCG-CCCCAACCC--TCCCAGAC--TTTTCTAGC--A  1039

seq1  GCTCTGAACCAACCCCCCCTGACACCATCCTTCATT  1083
      |||||  | ||| ||||||||||||||| |||||||
seq2  GCTCTTGAACAA-CCCCCCTGACACCAT-CTTCATT  1073