BAC Information

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BAC

Clone NameB6Ng01-111G11
Chromosome4 (Build37)
Map Location 148,266,462 - 148,371,707
singlet/doubletdoublet
Overlap geneCasz1, Pex14
Upstream geneMfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755
Downstream geneLOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111G11.bB6Ng01-111G11.g
ACCDH917758DH917759
length797564
definitionDH917758|Mus musculus domesticus DNA, BAC clone: B6Ng01-111G11, 5' end.DH917759|Mus musculus domesticus DNA, BAC clone: B6Ng01-111G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,370,908 - 148,371,707)(148,266,462 - 148,267,031)
sequence
gaattctatgaaaagggaaggactggtgcccgaggaagaagtcgtatgga
gtgaattccaggaacaggaaagcgtgctgtacggacagggtaggcagtgg
ttcgaggcaggctcgctgtgctttaggaggattgctccctctgaggagtt
tggacttgttctgaagactttgggaatcatcagttttacacagatgggtg
atgctttagtaggctcaacctgacggccatgtcaagaatagaccgttgct
ggtgcacgccattaatcccagtgcttgggaggcagaggaaggcagatctc
tgagtttgaggccagccttatctacagagtgagaccttgtctttaaagat
taataatagtaataataacaatactacccccaccaggaagacaataattg
tcattgcagagatgatctgatgttcactaaaatagaatggaaaaaaacca
aaccaaaccaaccaaacagcagaaacacgccccacccaagctatttaata
actaggaaagagaagatagcaactatatcaagaaacccattgcaagctac
cataaaaaacaatagacaaaatcacaccaaaaagaagacagagaaagtgg
aaataaacttaggtcaacaggaaaacaaatcataaggtataaatagacgc
cctcaagaatcaatgttattatagtaaatgcattattattaagttaaata
taaaaatgattatattacatgtaaatgaataaatactgtattacaagtca
actctgtggttgtgagtaaaatgcttggttttcaattatggtaacct
tcagtgttgtgtggtcaccatagtgaggctgggattgcatagcaactcta
ggctggggcttggtttcaggatgcttaatgccccactctgctggggagtc
tccacccctcctctgcctcctgctctgttcagtccttcttactctgagcc
ccagctcctctctcctcacacaccccaactccctcagagctgtgcattca
gtggcccttctgtagccattacctcagatccgtagtcatagtcatcacac
acacacacacacacacacacacacacacacacacacacacacagctccca
ccccagcacactttgcaaggtgggaagtgtataccctgccaggctgttgg
ggtatacagtgcccagaaaccagcaggaaggcagagggtctctgcccagc
cagtttcccccagcagccacaagatgtagcacccatccctaggacagtac
cttggagctttccctgatccctggaaaagctctgacactgagcccttgga
gccagcaaagcttctgagtccaatggacctctgggaaaagaagggcactg
ggggtgggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_148370908_148371707
seq2: B6Ng01-111G11.b_47_843 (reverse)

seq1  AGGTTACCATACTTGGAAAGCAAGCATTTTTACTCCCAACCACAGAGTTG  50
      ||||||||||| ||| ||| |||||| |||||||| ||||||||||||||
seq2  AGGTTACCATAATTGAAAACCAAGCA-TTTTACTCACAACCACAGAGTTG  49

seq1  GCTTGTAATACAGTATTTTATTCATTTACATGTAATATAATCATTTTATA  100
       |||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  ACTTGTAATACAGTA-TTTATTCATTTACATGTAATATAATCATTTT-TA  97

seq1  TAATTAACTTAATAATAATGCATTTAATATAATAAACATTGATTCTTGAG  150
      || ||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  TATTTAACTTAATAATAATGCATTTACTATAAT-AACATTGATTCTTGAG  146

seq1  GGCGTCTATTTATACCTTATGATTTGTTTTCCTGTTGACCT-AGTTTATT  199
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCGTCTATTTATACCTTATGATTTGTTTTCCTGTTGACCTAAGTTTATT  196

seq1  TCCACTTTCTCTGTCTTCTTTTTGGTGTGATTTTGTCTATTGTTTTTTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTCTCTGTCTTCTTTTTGGTGTGATTTTGTCTATTGTTTTTTAT  246

seq1  GGTAGCTTGCAATGGGTTTCTTGATATAGTTGCTATCTTCTCTTTCCTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTTGCAATGGGTTTCTTGATATAGTTGCTATCTTCTCTTTCCTAG  296

seq1  TTATTAAATAGCTTGGGTGGGGCGTGTTTCTGCTGTTTGGTTGGTTTGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAATAGCTTGGGTGGGGCGTGTTTCTGCTGTTTGGTTGGTTTGGT  346

seq1  TTGGTTTTTTTCCATTCTATTTTAGTGAACATCAGATCATCTCTGCAATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTTCCATTCTATTTTAGTGAACATCAGATCATCTCTGCAATG  396

seq1  ACAATTATTGTCTTCCTGGTGGGGGTAGTATTGTTATTATTACTATTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATTGTCTTCCTGGTGGGGGTAGTATTGTTATTATTACTATTATT  446

seq1  AATCTTTAAAGACAAGGTCTCACTCTGTAGATAAGGCTGGCCTCAAACTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTAAAGACAAGGTCTCACTCTGTAGATAAGGCTGGCCTCAAACTC  496

seq1  AGAGATCTGCCTTCCTCTGCCTCCCAAGCACTGGGATTAATGGCGTGCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTGCCTTCCTCTGCCTCCCAAGCACTGGGATTAATGGCGTGCAC  546

seq1  CAGCAACGGTCTATTCTTGACATGGCCGTCAGGTTGAGCCTACTAAAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACGGTCTATTCTTGACATGGCCGTCAGGTTGAGCCTACTAAAGCA  596

seq1  TCACCCATCTGTGTAAAACTGATGATTCCCAAAGTCTTCAGAACAAGTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCATCTGTGTAAAACTGATGATTCCCAAAGTCTTCAGAACAAGTCC  646

seq1  AAACTCCTCAGAGGGAGCAATCCTCCTAAAGCACAGCGAGCCTGCCTCGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTCAGAGGGAGCAATCCTCCTAAAGCACAGCGAGCCTGCCTCGA  696

seq1  ACCACTGCCTACCCTGTCCGTACAGCACGCTTTCCTGTTCCTGGAATTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCCTACCCTGTCCGTACAGCACGCTTTCCTGTTCCTGGAATTCA  746

seq1  CTCCATACGACTTCTTCCTCGGGCACCAGTCCTTCCCTTTTCATAGAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATACGACTTCTTCCTCGGGCACCAGTCCTTCCCTTTTCATAGAATT  796

seq1  C  800
      |
seq2  C  797

seq1: chr4_148266462_148267031
seq2: B6Ng01-111G11.g_68_637

seq1  GAATTCTCAGTGTTGTGTGGTCACCATAGTGAGGCTGGGATTGCATAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTGTTGTGTGGTCACCATAGTGAGGCTGGGATTGCATAGCA  50

seq1  ACTCTAGGCTGGGGCTTGGTTTCAGGATGCTTAATGCCCCACTCTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGGCTGGGGCTTGGTTTCAGGATGCTTAATGCCCCACTCTGCTGG  100

seq1  GGAGTCTCCACCCCTCCTCTGCCTCCTGCTCTGTTCAGTCCTTCTTACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTCCACCCCTCCTCTGCCTCCTGCTCTGTTCAGTCCTTCTTACTC  150

seq1  TGAGCCCCAGCTCCTCTCTCCTCACACACCCCAACTCCCTCAGAGCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCCAGCTCCTCTCTCCTCACACACCCCAACTCCCTCAGAGCTGTG  200

seq1  CATTCAGTGGCCCTTCTGTAGCCATTACCTCAGATCCGTAGTCATAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTGGCCCTTCTGTAGCCATTACCTCAGATCCGTAGTCATAGTCA  250

seq1  TCACACACACACACACACACACACACACACACACACACACACACACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACACACACACACACACACACACACACACACACACACACAG  300

seq1  CTCCCACCCCAGCACACTTTGCAAGGTGGGAAGTGTATACCCTGCCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCCCAGCACACTTTGCAAGGTGGGAAGTGTATACCCTGCCAGGC  350

seq1  TGTTGGGGTATACAGTGCCCAGAAACCAGCAGGAAGGCAGAGGGTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGGTATACAGTGCCCAGAAACCAGCAGGAAGGCAGAGGGTCTCTG  400

seq1  CCCAGCCAGTTTCCCCCAGCAGCCACAAGATGTAGCACCCATCCCTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCAGTTTCCCCCAGCAGCCACAAGATGTAGCACCCATCCCTAGGA  450

seq1  CAGTACCTTGGAGCTTTCCCTGATCCCTGGAAAAGCTCTGACACTGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTTGGAGCTTTCCCTGATCCCTGGAAAAGCTCTGACACTGAGCC  500

seq1  CTTGGAGCCAGCAAAGCTTCTGAGTCCAATGGACCTCTGGGAAAAGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGCCAGCAAAGCTTCTGAGTCCAATGGACCTCTGGGAAAAGAAGG  550

seq1  GCACTGGGGGTGGGGGAGGG  570
      ||||||||||||||||||||
seq2  GCACTGGGGGTGGGGGAGGG  570