BAC Information

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BAC

Clone NameB6Ng01-111H14
Chromosome4 (Build37)
Map Location 103,312,890 - 103,313,996
singlet/doubletsinglet
Overlap genenone
Upstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940
Downstream geneEG665460, LOC622315, Dab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111H14.bB6Ng01-111H14.g
ACCDH917810DH917811
length9561,100
definitionDH917810|Mus musculus domesticus DNA, BAC clone: B6Ng01-111H14, 5' end.DH917811|Mus musculus domesticus DNA, BAC clone: B6Ng01-111H14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaatagaggaattttgaatggctgagaaacacctaatgaaatg
ttcaatgtccttagtcatcagggaaatgaaaatcaaaacaatcctgagat
tccatcttacaccaatcagaatagctaagatcaaaacctcaggtgacagc
acatgttggtgaggacgtggagaaagaagaacactcctccatttctggtg
ggattgcaaaatggtacaaccactttggaaatcaatctggaggttcctca
aaaaacaggaaatatatctacctgaagacctatctataccactcttgggt
atatacctaaaagatgccctaccatgccacaggaacacatgttccactat
gttcatagcaatcttatttgtgatagccagaagctggaaacaacccagat
gtcccacaatggaagaatggatacagaaaatttggttaatttacacaatg
aactactatttagctattaagaatgaagacactatgagtttttcaggaaa
atggatggaactagaaaatatcgttctgagtgaagtaactcagatccaaa
tgtacaggcattttatgtcctcactaataagtggatattagccaaaaaag
tacagaacacccaggatacaatccacagaactcaagaagattaataaacc
caagggtccaaagtgaggatgcctcaatcccacttgggaggaagaagaaa
gcaatcttggggggcagagggagagagggacccgggtgggaggtgacagg
gaggggaaaaggagaatatgatctggtattgggaaaaataggactgaagc
cctgagggccagcagaaagagtaaaagcaggcacctcagaggtaggagat
ggggggggaggctctaaatgtcccaagacctgggagtggagagactctct
gactctaaggggacctgaatgaatgtctcagggggaggtggactgagagt
ccatct
gaattccatgcggccttgtctgcggctcctgcatcctccccacatccctc
tcacggtagagcatcaagacggatgccttcgtttctttttcattaagttg
acaagagaaacgaggtcacttttcctgcacatggtctttctcacccctaa
aaactagccaggtcaggaagccaccaaacagccttgcttccaagctgtgc
tgtcaaaggtcagtggatctgggaataaaatagctcacagggcatttaat
ttttaaagagagagcaaaatggtgaagagcctttaaaaattgctccttgc
tttgtgtgtaatcaacagccaggctgggggtcaccaccaatccccagctc
tcttgaggcgtaggagcaggtggagtatttgtatctggagccagagaaaa
ttgcagacctgacccctgctttctctctcccagagaggacccacctctat
gatctatgacaaagcccggatccttattgaaggactggctttcagctggc
taaccccacccacaccccctacagcttgaccactaacaaagaacctattc
aaaggacaaagtggcatcctccctacaaggattctctatgagggccgagt
gtatgacacatgacagtttaagtcttcaggaagacaacagataaatacct
ggtcttgagattcgctgcttcatcagcagtagacatatggccaaatacag
caaccaagtgagtgtttattaagcgggggctgtgctgagtttctaggggg
tattacataaatgatattaatatttgatcagatatttatgacatctcccg
cactttatttcatctctctaaatcacatagcatctctgcagaagcaggga
tcacagcgtcatagctgtgagtttgatgtggtagataaaatgatggctca
gaaaactgacagacagagttggaattttacctgtacctcttctatcgatg
tgttctgacaccttacgtaatctttctgtgcctgtgtcttcagctctgct
ttgtgtgagtactgcagcaccttcactggattatggtaagctaatgaaat
attagttggcagcactacagagtgctagcacatggtacaatgggtatagt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_103312890_103313996
seq2: B6Ng01-111H14.g_69_1168 (reverse)

seq1  ACTATTACCAATTGTTACCATGTGCTAGGCACTCTGTAAGTGCTGCCAAC  50
      |||| |||| |||| |||||||||||| ||||||||| ||||||||||||
seq2  ACTA-TACCCATTG-TACCATGTGCTA-GCACTCTGT-AGTGCTGCCAAC  46

seq1  TTATTAATTCATTAGCTTACCATAATCCAGTGAAGGTGCTGCAGTACTCA  100
       || || |||||||||||||||||||||||||||||||||||||||||||
seq2  -TAATATTTCATTAGCTTACCATAATCCAGTGAAGGTGCTGCAGTACTCA  95

seq1  CACCAAAGGCAGAGCTGAAGACACAGGCACAGAAAGATTACGTAAGGTGT  150
      |||  || ||||||||||||||||||||||||||||||||||||||||||
seq2  CAC--AAAGCAGAGCTGAAGACACAGGCACAGAAAGATTACGTAAGGTGT  143

seq1  TCAAGATCACATCGATAGAAGAGGTACAGGTAGAATTCCAACTCTTGTCT  200
         ||| ||||||||||||||||||||||||| ||||||||||| |||||
seq2  --CAGAACACATCGATAGAAGAGGTACAGGTAAAATTCCAACTC-TGTCT  190

seq1  GTCAGGTTTCTGAGCCATCATTTTATCTACCACATCAAACTCACAGCTAT  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTTCTGAGCCATCATTTTATCTACCACATCAAACTCACAGCTAT  240

seq1  GACGCTGTGATCCCTGC-TCTGCAGAGATGCTATGTGATTTAGAGAGATG  299
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACGCTGTGATCCCTGCTTCTGCAGAGATGCTATGTGATTTAGAGAGATG  290

seq1  AAATAAAGTGCGGGAGATGTCATAAATATCTGATC-AATATTAATATCA-  347
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  AAATAAAGTGCGGGAGATGTCATAAATATCTGATCAAATATTAATATCAT  340

seq1  TTATGTAATACCCCCTAGAAACTCAGCACAGCCCCCGCTTAATAAACACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAATACCCCCTAGAAACTCAGCACAGCCCCCGCTTAATAAACACT  390

seq1  CACTTGGTTGCTGTATTTGGCCATATGTCTACTGCTGATGAAGCAGCGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGTTGCTGTATTTGGCCATATGTCTACTGCTGATGAAGCAGCGAA  440

seq1  TCTCAAGACCAGGTATTTATCTGTTGTCTTCCTGAAGACTTAAACTGTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGACCAGGTATTTATCTGTTGTCTTCCTGAAGACTTAAACTGTCA  490

seq1  TGTGTCATACACTCGGCCCTCATAGAGAATCCTTGTAGGGAGGATGCCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATACACTCGGCCCTCATAGAGAATCCTTGTAGGGAGGATGCCAC  540

seq1  TTTGTCCTTTGAATAGGTTCTTTGTTAGTGGTCAAGCTGTAGGGGGTGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTTGAATAGGTTCTTTGTTAGTGGTCAAGCTGTAGGGGGTGTG  590

seq1  GGTGGGGTTAGCCAGCTGAAAGCCAGTCCTTCAATAAGGATCCGGGCTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTTAGCCAGCTGAAAGCCAGTCCTTCAATAAGGATCCGGGCTTT  640

seq1  GTCATAGATCATAGAGGTGGGTCCTCTCTGGGAGAGAGAAAGCAGGGGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGATCATAGAGGTGGGTCCTCTCTGGGAGAGAGAAAGCAGGGGTC  690

seq1  AGGTCTGCAATTTTCTCTGGCTCCAGATACAAATACTCCACCTGCTCCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCAATTTTCTCTGGCTCCAGATACAAATACTCCACCTGCTCCTA  740

seq1  CGCCTCAAGAGAGCTGGGGATTGGTGGTGACCCCCAGCCTGGCTGTTGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCAAGAGAGCTGGGGATTGGTGGTGACCCCCAGCCTGGCTGTTGAT  790

seq1  TACACACAAAGCAAGGAGCAATTTTTAAAGGCTCTTCACCATTTTGCTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAAAGCAAGGAGCAATTTTTAAAGGCTCTTCACCATTTTGCTCT  840

seq1  CTCTTTAAAAATTAAATGCCCTGTGAGCTATTTTATTCCCAGATCCACTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAAAATTAAATGCCCTGTGAGCTATTTTATTCCCAGATCCACTG  890

seq1  ACCTTTGACAGCACAGCTTGGAAGCAAGGCTGTTTGGTGGCTTCCTGACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGACAGCACAGCTTGGAAGCAAGGCTGTTTGGTGGCTTCCTGACC  940

seq1  TGGCTAGTTTTTAGGGGTGAGAAAGACCATGTGCAGGAAAAGTGACCTCG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGTTTTTAGGGGTGAGAAAGACCATGTGCAGGAAAAGTGACCTCG  990

seq1  TTTCTCTTGTCAACTTAATGAAAAAGAAACGAAGGCATCCGTCTTGATGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTGTCAACTTAATGAAAAAGAAACGAAGGCATCCGTCTTGATGC  1040

seq1  TCTACCGTGAGAGGGATGTGGGGAGGATGCAGGAGCCGCAGACAAGGCCG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCGTGAGAGGGATGTGGGGAGGATGCAGGAGCCGCAGACAAGGCCG  1090

seq1  CATGGAATTC  1107
      ||||||||||
seq2  CATGGAATTC  1100