BAC Information

Click to search

BAC

Clone NameB6Ng01-112C24
Chromosome4 (Build37)
Map Location 153,734,125 - 153,875,079
singlet/doubletdoublet
Overlap genePrdm16
Upstream geneAjap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16
Downstream geneLOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112C24.bB6Ng01-112C24.g
ACCDH918320DH918321
length5791,146
definitionDH918320|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C24, 5' end.DH918321|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,734,125 - 153,734,708)(153,873,931 - 153,875,079)
sequence
tgagaaagccggttcctggtctgtggggctgggtgacttcccttaacaaa
ggccaacttcggtgggaactgggggtgttggcgggggtgccaggttgagg
gggacggggtggggtatcctatgcttacacactgctgtccactgtatgct
taggccccttctgtgcttaacccttaaggttcttatacttggtttattac
atagtttccatcttgaatgctctggccgcttggccgttagcgtttcagga
gtctcacatacaacaggagaagcagtagcagctaggagtctgataccctc
tagccaccccctccccaagcatcctggggtgcagggccgcagagaagaag
caatctgccttctttctaaaacacagcaccccaagttttaggtacacacg
agtcctggggacctgtcacccaaggtctggtggcttctccttttctaaga
acctgagggtagggaccttctccccgacagctgagttgacaaacttctgt
ctgtgactctctgcaatagggacacacagaggcaggcagggcctgaagtg
gagtctcaggtttctcccccccccccccc
gaattcctgatcagcccctagacatggagggcagggtctgtacataggga
tgatcagtcacactcgtgggctccggcactcaattggccatgtactcaca
tgcacacatgcgcccacatgggtggacacgatggacctgtttattagcag
acttctgagatgtagctctccgggtttgggtccaggcagccctcctagat
aatggttttggctcctccgtctgtttctctttgttctccttaaaggaccg
tgttcatctgctctctagactgggtgtcttcacactcttctcatgggttg
gggggtctctgtaccttggaactaagatggagccagactagggatgtatt
ctaccctggacacacattgggcagcatgggtgcagggcagacatcccaca
cgctactctggaagtctctttacccccctccacttccaccccacccccgg
ctcttgggaagatgtgttctgtgctcaggaaggcattagctactgtgggt
ctctctcctgttttcagcttctgtttttctggtgaagaacttcctcaccg
gcttgccccagaaagctttgccacctgctggaccccagtcgttcctcaaa
gtacagaatgggcctccagacgaagcgtcctggggacatggggatattcc
gctggttgagcaatagcttctggggctagaacagggaatatctctgcact
gttaacagaaggcccctccacatttgtagcaaggggccccccggctccgg
ggtgcacagcgcccttgggatgtgttttctacgcagcctccctgtgcaca
gaaaccgaaaaccgcatgcccgacaaacagctccctcggcaaacgttttt
atttccaattagcaaaagaaaaattgctatttgctgtagttggaccggct
gacgtctcaatctgcggagtgtcagagcagtgaaagaaatgcttcacact
gttgctggcgagagcagcagctctaagagggtcaggtcagcgggcccaga
aaccagattgaactggccacagcgctaaatactcacacagacacacattg
gtctgccgtgccagctccggagacctgcttctccattcctctcccttgga
atgcaatggacctgggccggggaagggtccatcctggtaggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_153734125_153734708
seq2: B6Ng01-112C24.b_44_628

seq1  GAATTCTGAGAAAGCCGGTTCCTGGTCTGTGGGGCTGGGTGACTTCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGAAAGCCGGTTCCTGGTCTGTGGGGCTGGGTGACTTCCCTT  50

seq1  AACAAAGGCCAACTTCGGTGGGAACTGGGGGTGTTGGCGGGGGTGCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGCCAACTTCGGTGGGAACTGGGGGTGTTGGCGGGGGTGCCAGG  100

seq1  TTGAGGGGGACGGGGTGGGGTATCCTATGCTTACACACTGCTGTCCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGGGACGGGGTGGGGTATCCTATGCTTACACACTGCTGTCCACTG  150

seq1  TATGCTTAGGCCCCTTCTGTGCTTAACCCTTAAGGTTCTTATACTTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTAGGCCCCTTCTGTGCTTAACCCTTAAGGTTCTTATACTTGGTT  200

seq1  TATTACATAGTTTCCATCTTGAATGCTCTGGCCGCTTGGCCGTTAGCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATAGTTTCCATCTTGAATGCTCTGGCCGCTTGGCCGTTAGCGTT  250

seq1  TCAGGAGTCTCACATACAACAGGAGAAGCAGTAGCAGCTAGGAGTCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTCTCACATACAACAGGAGAAGCAGTAGCAGCTAGGAGTCTGAT  300

seq1  ACCCTCTAGCCACCCCCTCCCCAAGCATCCTGGGGTGCAGGGCCGCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTAGCCACCCCCTCCCCAAGCATCCTGGGGTGCAGGGCCGCAGAG  350

seq1  AAGAAGCAATCTGCCTTCTTTCTAAAACACAGCACCCCAAGTTTTAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAATCTGCCTTCTTTCTAAAACACAGCACCCCAAGTTTTAGGTA  400

seq1  CACACGAGTCCTGGGGACCTGTCACCCAAGGTCTGGTGGCTTCTCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGAGTCCTGGGGACCTGTCACCCAAGGTCTGGTGGCTTCTCCTTTT  450

seq1  CTAAGAACCTGAGGGTAGGGACCTTCTCCCCGACAGCTGAGTTGACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACCTGAGGGTAGGGACCTTCTCCCCGACAGCTGAGTTGACAAAC  500

seq1  TTCTGTCTGTGACTCTCTGCAATAGGGACACACAGAGGCAGGCAGGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTGTGACTCTCTGCAATAGGGACACACAGAGGCAGGCAGGGCCT  550

seq1  GAAGTGGAGTCTCAGG-TTCTCCCCCCCCCCCCCC  584
      |||||||||||||||| ||||||||||||||||||
seq2  GAAGTGGAGTCTCAGGTTTCTCCCCCCCCCCCCCC  585

seq1: chr4_153873931_153875079
seq2: B6Ng01-112C24.g_65_1210 (reverse)

seq1  CCTCTCCTCCCACGCTGGACCCTTCCCCCGCCCAGCTCCACTGCACTCCA  50
      |||||||| ||| | ||||||||||||| |||||| |||| |||| ||||
seq2  CCTCTCCTACCAGGATGGACCCTTCCCCGGCCCAGGTCCATTGCATTCCA  50

seq1  AGGGGAGA-GAATGAGAAAGCAGGTCCTCCGGGAGCTGGCACGGCAGA-C  98
      | |||||| |||||   |||||||| |||| ||||||||||||||||| |
seq2  A-GGGAGAGGAATGGAGAAGCAGGT-CTCC-GGAGCTGGCACGGCAGACC  97

seq1  AATGTGTGTCTTGTGTGAGTAATTTAGCGCTGTGGCCAG-TCAATCTGGT  147
      |||||||||| ||||||||| |||||||||||||||||| ||||||||||
seq2  AATGTGTGTC-TGTGTGAGT-ATTTAGCGCTGTGGCCAGTTCAATCTGGT  145

seq1  TTCTGGGCCCGCTGCCCTGACCCTCTTAGAGCTGCTGGCTCTCGCCAGC-  196
      |||||||||||||| ||||||||||||||||||||| |||||||||||| 
seq2  TTCTGGGCCCGCTGACCTGACCCTCTTAGAGCTGCT-GCTCTCGCCAGCA  194

seq1  ACAGTGTGAAGCATTTTCTTTCACTGCTCTGACACTCCGCAGATTGAGAC  246
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTGAAGCA-TTTCTTTCACTGCTCTGACACTCCGCAGATTGAGAC  243

seq1  GTCAGCCCGGTCCAACTACAGCAAATTAGCAATTTTTCTTTTGCTAATTG  296
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTCAG-CCGGTCCAACTACAGCAAA-TAGCAATTTTTCTTTTGCTAATTG  291

seq1  GAAATAAAAACGTTTGCCGAGGGAGCTGTTTGTC-GGCATGCGGTTTTCG  345
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAATAAAAACGTTTGCCGAGGGAGCTGTTTGTCGGGCATGCGGTTTTCG  341

seq1  GTTTCTGTGCACAGGGAGGCTGCGTAGAAAACACATCCCAA-GGCGCTGT  394
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTTCTGTGCACAGGGAGGCTGCGTAGAAAACACATCCCAAGGGCGCTGT  391

seq1  GCACCCCGGAGCCGGGGGGCCCCTTGCTACAAATGTGGAGGGGCCTTCTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCGGAGCCGGGGGGCCCCTTGCTACAAATGTGGAGGGGCCTTCTG  441

seq1  TTAACAGTGCAGAGATATTCCCTGTTCTAGCCCCAGAAGCTATTGCTCAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTGCAGAGATATTCCCTGTTCTAGCCCCAGAAGCTATTGCTCAA  491

seq1  CCAGCGGAATATCCCCATGTCCCCAGGACGCTTCGTCTGGAGGCCCATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGGAATATCCCCATGTCCCCAGGACGCTTCGTCTGGAGGCCCATTC  541

seq1  TGTACTTTGAGGAACGACTGGGGTCCAGCAGGTGGCAAAGCTTTCTGGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTGAGGAACGACTGGGGTCCAGCAGGTGGCAAAGCTTTCTGGGG  591

seq1  CAAGCCGGTGAGGAAGTTCTTCACCAGAAAAACAGAAGCTGAAAACAGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCGGTGAGGAAGTTCTTCACCAGAAAAACAGAAGCTGAAAACAGGA  641

seq1  GAGAGACCCACAGTAGCTAATGCCTTCCTGAGCACAGAACACATCTTCCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCCACAGTAGCTAATGCCTTCCTGAGCACAGAACACATCTTCCC  691

seq1  AAGAGCCGGGGGTGGGGTGGAAGTGGAGGGGGGTAAAGAGACTTCCAGAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCGGGGGTGGGGTGGAAGTGGAGGGGGGTAAAGAGACTTCCAGAG  741

seq1  TAGCGTGTGGGATGTCTGCCCTGCACCCATGCTGCCCAATGTGTGTCCAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTGTGGGATGTCTGCCCTGCACCCATGCTGCCCAATGTGTGTCCAG  791

seq1  GGTAGAATACATCCCTAGTCTGGCTCCATCTTAGTTCCAAGGTACAGAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAATACATCCCTAGTCTGGCTCCATCTTAGTTCCAAGGTACAGAGA  841

seq1  CCCCCCAACCCATGAGAAGAGTGTGAAGACACCCAGTCTAGAGAGCAGAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAACCCATGAGAAGAGTGTGAAGACACCCAGTCTAGAGAGCAGAT  891

seq1  GAACACGGTCCTTTAAGGAGAACAAAGAGAAACAGACGGAGGAGCCAAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGGTCCTTTAAGGAGAACAAAGAGAAACAGACGGAGGAGCCAAAA  941

seq1  CCATTATCTAGGAGGGCTGCCTGGACCCAAACCCGGAGAGCTACATCTCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATCTAGGAGGGCTGCCTGGACCCAAACCCGGAGAGCTACATCTCA  991

seq1  GAAGTCTGCTAATAAACAGGTCCATCGTGTCCACCCATGTGGGCGCATGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGCTAATAAACAGGTCCATCGTGTCCACCCATGTGGGCGCATGT  1041

seq1  GTGCATGTGAGTACATGGCCAATTGAGTGCCGGAGCCCACGAGTGTGACT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTGAGTACATGGCCAATTGAGTGCCGGAGCCCACGAGTGTGACT  1091

seq1  GATCATCCCTATGTACAGACCCTGCCCTCCATGTCTAGGGGCTGATCAGG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCCCTATGTACAGACCCTGCCCTCCATGTCTAGGGGCTGATCAGG  1141

seq1  AATTC  1149
      |||||
seq2  AATTC  1146