BAC Information

Click to search

BAC

Clone NameB6Ng01-112G23
Chromosome4 (Build37)
Map Location 153,324,870 - 153,551,538
singlet/doubletdoublet
Overlap geneBC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6
Upstream geneLOC100042089, Ajap1
Downstream geneArhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112G23.bB6Ng01-112G23.g
ACCDH918500DH918501
length9891,169
definitionDH918500|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G23, 5' end.DH918501|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,550,574 - 153,551,538)(153,324,870 - 153,326,041)
sequence
gaattctaccttctggccaatcagcactcatcccctgagggtccgaccac
caccggggctcctccccagcctcacaagtgaccaggcctgcctgagcagg
cctgctagaatctggggtgaaaggccatgccctcagtaaagggaatgggg
tcaaaccaaggcaaggccccagtcctagctgcctgaccctaaaggtcact
gctgctgctctgagctgagaactggtccccattagttcaagatctccgcc
acgtacctgcgctcttggccaacacaccatgcctgctgcccgcagcccga
cctccacacaggcactacgcggctgaaggcttgcacacaaggctggcggt
ggcccaccagggtcagcttctgttctgcacacacgtggggcctggaaaaa
aaggacaatgacattcaacttctctactggcaacagctatgcctctacac
ctatactaggtatccaactatcccatgctagaccatagctcatttgccca
cctggcatccacttgggactccaggacaaggagactaagaaggaatgaga
gccaccacatcatccaccgggatcctgagctgcatggggctgtccctaat
aagcttcaaggtaggcagaatctgctgtcccctgtggacaacccaggagc
tcagggcagagggggacttacaggtcttgttggagctcaggctttgtccc
caaacttcaggccctcagaacatcctccctctctcctggtacctcagagt
ctccctggcatcctcggactacataggggtatgtgacgtgacccaggagt
atgggatggggacaagcaagtcaacagaaaaacaaatatcccacccacac
cctgggacagtgattctttttacatttctgccctccactctgcccgggta
agccagcctatggaagcacagcgccaaaggtgggaggccctatgaacagc
ccttcctggccccacctagtggaaaaatagtttccgtgc
gaattcaccccagacttggacacatgaaagccgaatacaggtaactaacc
atatggtagacatagactagtttgaatgggttgaatttaagttatagact
agtaagggaatgaaccaatgcttatggcctaggcatttattaataaatag
tctcagagtagttattgttgggaactaagtagccaggaggaaagacaatg
cattgttcacattgcagaagagaacacagattgcaaagttgttacaaact
ttactcaagagcaaaatcagggttgtgacttgtaaaagcctaggagagcc
ctacccatcactcactagctgctcactagcagagctactatctctaatat
gatgagctgagcgctctcaacgctgggtggctcactcatgggtcaagaaa
cttagactgcagatctgttcttcctgtcacattgccatagctgaggcaga
tgtgcagcgtgagtgtcatagcaggacaaacactgagatgacttcttcca
cagtctgacagaatactggcttaagaggtgtagctgcaactaaccaacca
gacagcattatgcctccagaaaaacttcaaagaaacgttctccaggcaac
agcacagtagctgtgggatgagatgctaaagaaagaacagagatgcccag
ccaaatagcgtgaaaggtggagacaaagttcttcccagtgcatggaggta
ccaacatgttcttggataacaagagttatatctcatttggagctggtgat
attcttgggcatgaagctgcccttttcactgaagttctgacgtatttcat
catgtaaatcatttccatgtctccctttcataataaattgatgatatgca
aactataataataataataaagagcagcagtgtaggtcatatgcattaca
aagagagctgcaagctcctccagtgattgtcccagggcttcttttacgag
gtctgaacgaaggtttgttgctaagggggatactaatactgttttgatgg
acaggcttggatgtggcaggccagggcttacttacaaatgccccttccca
tgagcaacctgggcttttttatttttactcccttaactaaacattccttc
cttcttttttttcagtttctcaccccaccacatatctgttcccagaacca
cgtcctcctctttttccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_153550574_153551538
seq2: B6Ng01-112G23.b_47_1023 (reverse)

seq1  TTTTTCCACTTGGT-GGGCCTGG-AGGGCTG-TCTTA-GGCCTCCCACCT  46
      |||||||||| ||| ||||| || ||||||| || || ||||||||||||
seq2  TTTTTCCACTAGGTGGGGCCAGGAAGGGCTGTTCATAGGGCCTCCCACCT  50

seq1  TTGGCACTGTGCTTCCCTAGGCTGGCTT--CCGGGCCGAGTGGAGGGCAG  94
      ||||| |||||||||| |||||||||||  |||||| |||||||||||||
seq2  TTGGCGCTGTGCTTCCATAGGCTGGCTTACCCGGGCAGAGTGGAGGGCAG  100

seq1  AAATGTAAAAAGAATCACTGTCCCA-GGTGTGGGT-GGATATTTGGTTTT  142
      ||||||||||||||||||||||||| ||||||||| ||||||||| ||||
seq2  AAATGTAAAAAGAATCACTGTCCCAGGGTGTGGGTGGGATATTTGTTTTT  150

seq1  CTGTTGACTTGCTTGTCCCCATCCC-TACTCCTGGGTCACGTCACATACC  191
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGTTGACTTGCTTGTCCCCATCCCATACTCCTGGGTCACGTCACATACC  200

seq1  CCTATGTAGTCCGAGGATGCCAGGGAGACTCTGAGGTACCAGGAGAGAGG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTAGTCCGAGGATGCCAGGGAGACTCTGAGGTACCAGGAGAGAGG  250

seq1  GAGGATGTTCTGA-GGCCTGAAGTTTGGGGAC-AAGCCTGAGCTCCAACA  289
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  GAGGATGTTCTGAGGGCCTGAAGTTTGGGGACAAAGCCTGAGCTCCAACA  300

seq1  AGACCTGTAAGT-CCCCTCTGCCCTGAGCTCCTGGGTTGTCCACAGGGGA  338
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTAAGTCCCCCTCTGCCCTGAGCTCCTGGGTTGTCCACAGGGGA  350

seq1  CAGCAGATTCTGCCTACCTTGAAGCTTATTAGGGACAGCCCCATGCAGCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATTCTGCCTACCTTGAAGCTTATTAGGGACAGCCCCATGCAGCT  400

seq1  CAGGATCCCGGTGGATGATGTGGTGGCTCTCATTCCTTCTTAGTCTCCTT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCCCGGTGGATGATGTGGTGGCTCTCATTCCTTCTTAGTCTCCTT  450

seq1  GTCCTGGAGTCCCAAGTGGATGCCAGGTGGGCAAATGAGCTATGGTCTAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAGTCCCAAGTGGATGCCAGGTGGGCAAATGAGCTATGGTCTAG  500

seq1  CATGGGATAGTTGGATACCTAGTATAGGTGTAGAGGCATAGCTGTTGCCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGATAGTTGGATACCTAGTATAGGTGTAGAGGCATAGCTGTTGCCA  550

seq1  GTAGAGAAGTTGAATGTCATTGTCCTTTTTTTCCAGGCCCCACGTGTGTG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAGTTGAATGTCATTGTCCTTTTTTTCCAGGCCCCACGTGTGTG  600

seq1  CAGAACAGAAGCTGACCCTGGTGGGCCACCGCCAGCCTTGTGTGCAAGCC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGAAGCTGACCCTGGTGGGCCACCGCCAGCCTTGTGTGCAAGCC  650

seq1  TTCAGCCGCGTAGTGCCTGTGTGGAGGTCGGGCTGCGGGCAGCAGGCATG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCGCGTAGTGCCTGTGTGGAGGTCGGGCTGCGGGCAGCAGGCATG  700

seq1  GTGTGTTGGCCAAGAGCGCAGGTACGTGGCGGAGATCTTGAACTAATGGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGGCCAAGAGCGCAGGTACGTGGCGGAGATCTTGAACTAATGGG  750

seq1  GACCAGTTCTCAGCTCAGAGCAGCAGCAGTGACCTTTAGGGTCAGGCAGC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTTCTCAGCTCAGAGCAGCAGCAGTGACCTTTAGGGTCAGGCAGC  800

seq1  TAGGACTGGGGCCTTGCCTTGGTTTGACCCCATTCCCTTTACTGAGGGCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTGGGGCCTTGCCTTGGTTTGACCCCATTCCCTTTACTGAGGGCA  850

seq1  TGGCCTTTCACCCCAGATTCTAGCAGGCCTGCTCAGGCAGGCCTGGTCAC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTCACCCCAGATTCTAGCAGGCCTGCTCAGGCAGGCCTGGTCAC  900

seq1  TTGTGAGGCTGGGGAGGAGCCCCGGTGGTGGTCGGACCCTCAGGGGATGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGCTGGGGAGGAGCCCCGGTGGTGGTCGGACCCTCAGGGGATGA  950

seq1  GTGCTGATTGGCCAGAAGGTAGAATTC  965
      |||||||||||||||||||||||||||
seq2  GTGCTGATTGGCCAGAAGGTAGAATTC  977

seq1: chr4_153324870_153326041
seq2: B6Ng01-112G23.g_67_1235

seq1  GAATTCACCCCAGACTTGGACACATGAAAGCCGAATACAGGTAACTAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCAGACTTGGACACATGAAAGCCGAATACAGGTAACTAACC  50

seq1  ATATGGTAGACATAGACTAGTTTGAATGGGTTGAATTTAAGTTATAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTAGACATAGACTAGTTTGAATGGGTTGAATTTAAGTTATAGACT  100

seq1  AGTAAGGGAATGAACCAATGCTTATGGCCTAGGCATTTATTAATAAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGGAATGAACCAATGCTTATGGCCTAGGCATTTATTAATAAATAG  150

seq1  TCTCAGAGTAGTTATTGTTGGGAACTAAGTAGCCAGGAGGAAAGACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGTAGTTATTGTTGGGAACTAAGTAGCCAGGAGGAAAGACAATG  200

seq1  CATTGTTCACATTGCAGAAGAGAACACAGATTGCAAAGTTGTTACAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTCACATTGCAGAAGAGAACACAGATTGCAAAGTTGTTACAAACT  250

seq1  TTACTCAAGAGCAAAATCAGGGTTGTGACTTGTAAAAGCCTAGGAGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAGAGCAAAATCAGGGTTGTGACTTGTAAAAGCCTAGGAGAGCC  300

seq1  CTACCCATCACTCACTAGCTGCTCACTAGCAGAGCTACTATCTCTAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCATCACTCACTAGCTGCTCACTAGCAGAGCTACTATCTCTAATAT  350

seq1  GATGAGCTGAGCGCTCTCAACGCTGGGTGGCTCACTCATGGGTCAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCTGAGCGCTCTCAACGCTGGGTGGCTCACTCATGGGTCAAGAAA  400

seq1  CTTAGACTGCAGATCTGTTCTTCCTGTCACATTGCCATAGCTGAGGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACTGCAGATCTGTTCTTCCTGTCACATTGCCATAGCTGAGGCAGA  450

seq1  TGTGCAGCGTGAGTGTCATAGCAGGACAAACACTGAGATGACTTCTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGCGTGAGTGTCATAGCAGGACAAACACTGAGATGACTTCTTCCA  500

seq1  CAGTCTGACAGAATACTGGCTTAAGAGGTGTAGCTGCAACTAACCAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGACAGAATACTGGCTTAAGAGGTGTAGCTGCAACTAACCAACCA  550

seq1  GACAGCATTATGCCTCCAGAAAAACTTCAAAGAAACGTTCTCCAGGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATTATGCCTCCAGAAAAACTTCAAAGAAACGTTCTCCAGGCAAC  600

seq1  AGCACAGTAGCTGTGGGATGAGATGCTAAAGAAAGAACAGAGATGCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTAGCTGTGGGATGAGATGCTAAAGAAAGAACAGAGATGCCCAG  650

seq1  CCAAATAGCGTGAAAGGTGGAGACAAAGTTCTTCCCAGTGCATGGAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGCGTGAAAGGTGGAGACAAAGTTCTTCCCAGTGCATGGAGGTA  700

seq1  CCAACATGTTCTTGGATAACAAGAGTTATATCTCATTTGGAGCTGGTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATGTTCTTGGATAACAAGAGTTATATCTCATTTGGAGCTGGTGAT  750

seq1  ATTCTTGGGCATGAAGCTGCCCTTTTCACTGAAGTTCTGACGTATTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGGCATGAAGCTGCCCTTTTCACTGAAGTTCTGACGTATTTCAT  800

seq1  CATGTAAATCATTTCCATGTCTCCCTTTCATAATAAATTGATGATATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAATCATTTCCATGTCTCCCTTTCATAATAAATTGATGATATGCA  850

seq1  AACTAATAATAATAATAATAAAGAGCAGCAGTGTAGGTCAGATGCATTAC  900
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACT-ATAATAATAATAATAAAGAGCAGCAGTGTAGGTCATATGCATTAC  899

seq1  AAAGAGAGCTGCAAGCTCCTCCAGTGATTGTCCCAGGGCTTCTTTTACGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGCTGCAAGCTCCTCCAGTGATTGTCCCAGGGCTTCTTTTACGA  949

seq1  GGTCTGAACGAAGGTTTGTTGCTAAGGGGGATACTAATACTGTTTTGATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTCTGAACGAAGGTTTGTTGCTAAGGGGGATACTAATACTGTTTTGATG  999

seq1  GACAGGCTTGGATTGTGCAAGCCAGGGCTTAC-TACAAATGCCCCTTCCC  1049
      |||||||||||||   ||| |||||||||||| |||||||||||||||||
seq2  GACAGGCTTGGATGTGGCAGGCCAGGGCTTACTTACAAATGCCCCTTCCC  1049

seq1  ATGACGCATCTGGTCTTTTTATTTATTACTCCCTCACACAATACATCCCC  1099
      ||||   | |||| ||||||  || ||||||||| | || | ||||  ||
seq2  ATGAGCAACCTGGGCTTTTTTATTTTTACTCCCTTA-ACTAAACAT-TCC  1097

seq1  TCCCTCCACTCTTCCCAGTTCCATCCCCCACCCCACATCCTCTG-TCCCA  1148
      | ||| |  | ||  ||||| |   ||||||| || |   |||| |||||
seq2  TTCCTTCTTTTTTTTCAGTTTCTCACCCCACCACATA---TCTGTTCCCA  1144

seq1  GATCCAC-TGCTCCTCTTTTTCCCT  1172
      || |||| | |||||||||||||||
seq2  GAACCACGTCCTCCTCTTTTTCCCT  1169