BAC Information

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BAC

Clone NameB6Ng01-112I06
Chromosome4 (Build37)
Map Location 40,492,230 - 40,635,179
singlet/doubletdoublet
Overlap geneAptx
Upstream geneLOC435775, LOC329824, LOC621880, LOC384007, Aco1, Ddx58, Topors, Ndufb6, 4930509K18Rik, A930001M12Rik
Downstream geneLOC665630, LOC622208, Dnaja1, Smu1, LOC100042305, B4galt1, LOC100039668, Spink4, Bag1, Chmp5, Nfx1, Aqp7, Aqp3, Nol6, Ube2r2, Ubap2, Wdr40a, Ubap1, Kif24, Nudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik, Dnaic1, 2310040A07Rik, LOC100042420, Cntfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112I06.bB6Ng01-112I06.g
ACCDH918558DH918559
length6161,169
definitionDH918558|Mus musculus domesticus DNA, BAC clone: B6Ng01-112I06, 5' end.DH918559|Mus musculus domesticus DNA, BAC clone: B6Ng01-112I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,634,564 - 40,635,179)(40,492,230 - 40,493,417)
sequence
gaattcttttaatacagaatactttctggaatcacaaggtaaatattttc
tgtttttatttttcattttattttttaatatttacttcattttcttagat
gttttgctatctgactcagttgcttctctaagtaacaacctggcctcaaa
tggcctcatatatttagtgatctctataaaaaggccactcctaaaatgaa
caaagatgtttcatggtaatagggtcgctactttgctgtgaacatcctgg
aggggccctggagggagctgttatgtcagggtcaaaagtgtttgattttg
acagcagatgagttaggcctgctcagtagagctactgccaggtgttctga
agctcgtgcgctgggctggatgcttcactgggaaggagctacacaggttc
tgagtctaaccgttgctggagtctgtgctagccaggctttgtcactgtgt
cattatactgatgtaacctaagaagttaaacctgtccataggttcctatt
ggacttgtccgtggctctgctgctgggctgtggcgaggctcaacgttggt
agggaggacgagggggagcaacgctgctcacttcttgtcagggagggaga
ggagagggtgggagag
gaattctacagggtcataaataaccagaaagaaaggcaggtcactatttc
ttccaagtaaatctggttttgtttttctgtttgtttgcttgattgggatt
ggtcgattttgtttttgtttttgtttgcatgtgtgtgagtgtgtgtgtga
cattgtaaaatgaattcaaacattcacagacttgtctacaattatagggt
agaagttatttgttactacatttacattgataatatccacagcattatgg
aaaccaacctaaacattttattgtttatattttgtaagaaattttagcaa
taattttccccagacattttcctgtcagttttcatggtggtgttatataa
tcttatatgtgtgtgtctctttttagtatttctacagtttcatttttata
ttcaaatttaaaactgacccacattaattttagctaaggatgtgctgtaa
agacctgaccttatttatgccaaatggttaaataactatcttctctttaa
ataagagaacaatatattgtcttattgtctctactttggtccatttaaga
gctaaccttattcttttctcctgtccagcttcacgctggcatcatcctta
catttcaatgttttattttaaaaatgtgaaaagcataagtatacatcctg
gtgactttttgcagactgcacttacttgcaacaccagcactagatttgaa
caaacatcaccacccacgtagctctcttctcgtcactcaccactgctcct
acacccaagggaaccatcctgactcctgacaacccagggcagctttacca
gccattttctttatgtgaatggagtcatagagcagcaatggcatttttaa
aaataattgttgttttcattttatttgtctggctcgtctactgatacccc
gtgctctgagacgtgtcatcgcatcagtcaagggacgcctagcaaccagt
ctgggaagtctcctatcacttcttcaccagatctcagctcaggcagctga
gaggtcattctcaactctaaatgctcctctgctaacagcatctgtctgtt
tctgaactctaaattttgaacaaataaactaagaaccctttcactttcta
ggtgatacaattctttcaaacatttttctactgagacataacagccatgt
tctaaatcgtacttagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_40634564_40635179
seq2: B6Ng01-112I06.b_47_662 (reverse)

seq1  CTCTCCCACCCTCTCCTCTCCCTCCCTGACAAGAAGTGAGCAGCGTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCACCCTCTCCTCTCCCTCCCTGACAAGAAGTGAGCAGCGTTGCT  50

seq1  CCCCCTCGTCCTCCCTACCAACGTTGAGCCTCGCCACAGCCCAGCAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCGTCCTCCCTACCAACGTTGAGCCTCGCCACAGCCCAGCAGCAG  100

seq1  AGCCACGGACAAGTCCAATAGGAACCTATGGACAGGTTTAACTTCTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACGGACAAGTCCAATAGGAACCTATGGACAGGTTTAACTTCTTAGG  150

seq1  TTACATCAGTATAATGACACAGTGACAAAGCCTGGCTAGCACAGACTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCAGTATAATGACACAGTGACAAAGCCTGGCTAGCACAGACTCCA  200

seq1  GCAACGGTTAGACTCAGAACCTGTGTAGCTCCTTCCCAGTGAAGCATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGGTTAGACTCAGAACCTGTGTAGCTCCTTCCCAGTGAAGCATCCA  250

seq1  GCCCAGCGCACGAGCTTCAGAACACCTGGCAGTAGCTCTACTGAGCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCGCACGAGCTTCAGAACACCTGGCAGTAGCTCTACTGAGCAGGC  300

seq1  CTAACTCATCTGCTGTCAAAATCAAACACTTTTGACCCTGACATAACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCATCTGCTGTCAAAATCAAACACTTTTGACCCTGACATAACAGC  350

seq1  TCCCTCCAGGGCCCCTCCAGGATGTTCACAGCAAAGTAGCGACCCTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCAGGGCCCCTCCAGGATGTTCACAGCAAAGTAGCGACCCTATTA  400

seq1  CCATGAAACATCTTTGTTCATTTTAGGAGTGGCCTTTTTATAGAGATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAACATCTTTGTTCATTTTAGGAGTGGCCTTTTTATAGAGATCAC  450

seq1  TAAATATATGAGGCCATTTGAGGCCAGGTTGTTACTTAGAGAAGCAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATGAGGCCATTTGAGGCCAGGTTGTTACTTAGAGAAGCAACTG  500

seq1  AGTCAGATAGCAAAACATCTAAGAAAATGAAGTAAATATTAAAAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATAGCAAAACATCTAAGAAAATGAAGTAAATATTAAAAAATAAA  550

seq1  ATGAAAAATAAAAACAGAAAATATTTACCTTGTGATTCCAGAAAGTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATAAAAACAGAAAATATTTACCTTGTGATTCCAGAAAGTATTC  600

seq1  TGTATTAAAAGAATTC  616
      ||||||||||||||||
seq2  TGTATTAAAAGAATTC  616

seq1: chr4_40492230_40493417
seq2: B6Ng01-112I06.g_67_1235

seq1  GAATTCTACAGGGTCATAAATAACCAGAAAGAAAGGCAGGTCACTATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGGGTCATAAATAACCAGAAAGAAAGGCAGGTCACTATTTC  50

seq1  TTCCAAGTAAATCTGGTTTTGTTTTTCTGTTTGTTTGCTTGATTGGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTAAATCTGGTTTTGTTTTTCTGTTTGTTTGCTTGATTGGGATT  100

seq1  GGTCGATTTTGTTTTTGTTTTTGTTTGCATGTGTGTGAGTGTGTGTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGATTTTGTTTTTGTTTTTGTTTGCATGTGTGTGAGTGTGTGTGTGA  150

seq1  CATTGTAAAATGAATTCAAACATTCACAGACTTGTCTACAATTATAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAAAATGAATTCAAACATTCACAGACTTGTCTACAATTATAGGGT  200

seq1  AGAAGTTATTTGTTACTACATTTACATTGATAATATCCACAGCATTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTATTTGTTACTACATTTACATTGATAATATCCACAGCATTATGG  250

seq1  AAACCAACCTAAACATTTTATTGTTTATATTTTGTAAGAAATTTTAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACCTAAACATTTTATTGTTTATATTTTGTAAGAAATTTTAGCAA  300

seq1  TAATTTTCCCCAGACATTTTCCTGTCAGTTTTCATGGTGGTGTTATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCCCCAGACATTTTCCTGTCAGTTTTCATGGTGGTGTTATATAA  350

seq1  TCTTATATGTGTGTGTCTCTTTTTAGTATTTCTACAGTTTCATTTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATGTGTGTGTCTCTTTTTAGTATTTCTACAGTTTCATTTTTATA  400

seq1  TTCAAATTTAAAACTGACCCACATTAATTTTAGCTAAGGATGTGCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTTAAAACTGACCCACATTAATTTTAGCTAAGGATGTGCTGTAA  450

seq1  AGACCTGACCTTATTTATGCCAAATGGTTAAATAACTATCTTCTCTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGACCTTATTTATGCCAAATGGTTAAATAACTATCTTCTCTTTAA  500

seq1  ATAAGAGAACAATATATTGTCTTATTGTCTCTACTTTGGTCCATTTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGAACAATATATTGTCTTATTGTCTCTACTTTGGTCCATTTAAGA  550

seq1  GCTAACCTTATTCTTTTCTCCTGTCCAGCTTCACGCTGGCATCATCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCTTATTCTTTTCTCCTGTCCAGCTTCACGCTGGCATCATCCTTA  600

seq1  CATTTCAATGTTTTATTTTAAAAATGTGAAAAGCATAAGTATACATCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAATGTTTTATTTTAAAAATGTGAAAAGCATAAGTATACATCCTG  650

seq1  GTGACTTTTTGCAGACTGCACTTACTTGCAACACCAGCACTAGATTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTTTGCAGACTGCACTTACTTGCAACACCAGCACTAGATTTGAA  700

seq1  CAAACATCACCACCCACGTAGCTCTCTTCTCGTCACTCACCACTGCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCACCACCCACGTAGCTCTCTTCTCGTCACTCACCACTGCTCCT  750

seq1  ACACCCAAGGGAACCATCCTGACTCCTGACAACCCAGGGCAGCTTTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAAGGGAACCATCCTGACTCCTGACAACCCAGGGCAGCTTTACCA  800

seq1  GCCATTTTCTTTATGTGAATGGAGTCATAGAGCAGCAATGGCATTTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTCTTTATGTGAATGGAGTCATAGAGCAGCAATGGCATTTTTAA  850

seq1  AAATAATTGTTGTTTTCATTTTATTTGTCTGGCTCGTCTTACTGATACCC  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAATAATTGTTGTTTTCATTTTATTTGTCTGGCTCGTC-TACTGATACCC  899

seq1  CGTGCTCTGAGACGTGTCATCGCATCAGTCAAGGGACGCCTAGCAACCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTCTGAGACGTGTCATCGCATCAGTCAAGGGACGCCTAGCAACCAG  949

seq1  TCTGGGAAGTCTTCCTATCACTTCCTTCACCAGATCTCAGCTCCAGGCAG  1000
      ||||||||||| ||||||||||| |||||||||||||||||| |||||||
seq2  TCTGGGAAGTC-TCCTATCACTT-CTTCACCAGATCTCAGCT-CAGGCAG  996

seq1  CTGAGAGGTCATTCTCACTCCTAAATGCCTCCTCTGCTAACAGCATCTGT  1050
      |||||||||||||||||   ||||||| ||||||||||||||||||||| 
seq2  CTGAGAGGTCATTCTCAACTCTAAATG-CTCCTCTGCTAACAGCATCTG-  1044

seq1  TCTGTTTCTGAACTTCTTAAATATTTGAACAAAATAAACTAATGTATCTC  1100
      ||||||||||||||   ||||| ||||||| |||||||||||   | | |
seq2  TCTGTTTCTGAACT--CTAAAT-TTTGAAC-AAATAAACTAA--GAACCC  1088

seq1  TTTCACTTTCTAAGTGTTGATAACCAAATTGTCTTTCAAACATTTTTTTC  1150
      ||||||||||||   | |||||  |||    ||||||||||||||||   
seq2  TTTCACTTTCTA---GGTGATA--CAA---TTCTTTCAAACATTTTT---  1127

seq1  CTACTGGTAGACAATAAACAGCCCATGT---------TTCTTAGATT  1188
      ||||||  |||||   ||||| ||||||         | ||||||||
seq2  CTACTG--AGACA--TAACAG-CCATGTTCTAAATCGTACTTAGATT  1169