BAC Information

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BAC

Clone NameB6Ng01-112M12
Chromosome4 (Build37)
Map Location 95,652,161 - 95,803,554
singlet/doubletdoublet
Overlap geneHook1, Cyp2j13, LOC242546
Upstream geneLOC100039265, LOC665029, Jun, LOC100042411, 2310009E04Rik
Downstream geneLOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112M12.bB6Ng01-112M12.g
ACCDH918755DH918756
length1311,166
definitionDH918755|Mus musculus domesticus DNA, BAC clone: B6Ng01-112M12, 5' end.DH918756|Mus musculus domesticus DNA, BAC clone: B6Ng01-112M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,803,424 - 95,803,554)(95,652,161 - 95,653,319)
sequence
gaattcccaagatgcaaaggctgctttgtacctcgagctcccttgagaag
tccagtgtctttgtattgctacttttgatctcaactagtttcatttgttt
gtgctctgggtagtggggaaggggggttgta
gaattcttctgatagacttttattccagaatagtttgtagcattaatcga
aggcactgtaattgttatgagtaattagaaatacaattagtccttcaagt
tagctccttaaatttttgaccacatattctggacaaaatgaaacagaata
atatgattttgacttagttttattagaaaataattgaattgtatttttct
tcacaagccccttcttcgggtatttgtattctttacttcctttaatagct
atttctcgaagcgtcaatcattaagttccatattggttttgctcactccc
ctgagacaggcttccaagtattctagaatatagtcttgttaatgtatgtt
gtagatgttacatgtttaaaactttgttaaagccgggcgtggtggcgcac
acttttaatcccagcactcaggaggcagaggcaggtggatttctgagttc
gagaccagcctggtctacaaagtgagttccaggacagccagggctacaca
gagaaaccctgtctcgaaaaaacaaaaaacaaaaaaaccaaaactttgtt
aaattcctaacatttttgtatgacagttatttgtcttgtccttcagtata
aacatagaactttttttctaatgaaaacagatgttttctttagtgtttag
tgttttgccatgtaccagtgcacttgaggcaattatcctgctcttctcct
ttgttctctaaagagggaggttgagcatataacatacctgtcttagtcag
ggtttctattcctgcacaaacatcatgaccaagaagcaatttggggagga
aagggtttattcggcttacacttccatactgctgttcatgcaggactgga
attcaagcaggtcatgagcaggagctgatgcaaaagccatggagggatgt
tcattactaacttgcttcccctggcttgctcagtctgctctcttatagaa
ccaagactaccagcccagagatggtccacccacaaagggccttttcccct
ggatcactaattgagaaaagtgcctttacaggttgttcttcaatggaggc
atttcctcaactgaaagctccttctctgtgataacttccagctgtggtca
agttggacacaaacctaagcagatacaaattgaaccttgttaactttaac
gccataaacaatcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_95803424_95803554
seq2: B6Ng01-112M12.b_31_161 (reverse)

seq1  TACAACCCCCCTTCCCCACTACCCAGAGCACAAACAAATGAAACTAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCCCCCTTCCCCACTACCCAGAGCACAAACAAATGAAACTAGTTG  50

seq1  AGATCAAAAGTAGCAATACAAAGACACTGGACTTCTCAAGGGAGCTCGTG  100
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGATCAAAAGTAGCAATACAAAGACACTGGACTTCTCAAGGGAGCTCGAG  100

seq1  GTACAAAGCAGCCTTTGCATCTTGGGAATTC  131
      |||||||||||||||||||||||||||||||
seq2  GTACAAAGCAGCCTTTGCATCTTGGGAATTC  131

seq1: chr4_95652161_95653319
seq2: B6Ng01-112M12.g_71_1236

seq1  GAATTCTTCTGATAGACTTTTATTCCAGAATAGTTTGTAGCATTAATCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGATAGACTTTTATTCCAGAATAGTTTGTAGCATTAATCGA  50

seq1  AGGCACTGTAATTGTTATGAGTAATTAGAAATACAATTAGTCCTTCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTGTAATTGTTATGAGTAATTAGAAATACAATTAGTCCTTCAAGT  100

seq1  TAGCTCCTTAAATTTTTGACCACATATTCTGGACAAAATGAAACAGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTTAAATTTTTGACCACATATTCTGGACAAAATGAAACAGAATA  150

seq1  ATATGATTTTGACTTAGTTTTATTAGAAAATAATTGAATTGTATTTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTTTGACTTAGTTTTATTAGAAAATAATTGAATTGTATTTTTCT  200

seq1  TCACAAGCCCCTTCTTCGGGTATTTGTATTCTTTACTTCCTTTAATAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGCCCCTTCTTCGGGTATTTGTATTCTTTACTTCCTTTAATAGCT  250

seq1  ATTTCTCGAAGCGTCAATCATTAAGTTCCATATTGGTTTTGCTCACTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCGAAGCGTCAATCATTAAGTTCCATATTGGTTTTGCTCACTCCC  300

seq1  CTGAGACAGGCTTCCAAGTATTCTAGAATATAGTCTTGTTAATGTATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAGGCTTCCAAGTATTCTAGAATATAGTCTTGTTAATGTATGTT  350

seq1  GTAGATGTTACATGTTTAAAACTTTGTTAAAGCCGGGCGTGGTGGCGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTTACATGTTTAAAACTTTGTTAAAGCCGGGCGTGGTGGCGCAC  400

seq1  ACTTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTC  450

seq1  GAGACCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACA  500

seq1  GAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAAAACCAAAACTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTCGAAAAAACAAAAAACAAAAAAACCAAAACTTTGTT  550

seq1  AAATTCCTAACATTTTTGTATGACAGTTATTTGTCTTGTCCTTCAGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTAACATTTTTGTATGACAGTTATTTGTCTTGTCCTTCAGTATA  600

seq1  AACATAGAACTTTTTTTCTAATGAAAACAGATGTTTTCTTTAGTGTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGAACTTTTTTTCTAATGAAAACAGATGTTTTCTTTAGTGTTTAG  650

seq1  TGTTTTGCCATGTACCAGTGCACTTGAGGCAATTATCCTGCTCTTCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCCATGTACCAGTGCACTTGAGGCAATTATCCTGCTCTTCTCCT  700

seq1  TTGTTCTCTAAAGAGGGAGGTTGAGCATATAACATACCTGTCTTAGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCTAAAGAGGGAGGTTGAGCATATAACATACCTGTCTTAGTCAG  750

seq1  GGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAATTTGGGGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAATTTGGGGAGGA  800

seq1  AAGGGTTTATTCGGCTTACACTTCCATACTGCTGTTCATGCAGGACTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTTATTCGGCTTACACTTCCATACTGCTGTTCATGCAGGACTGGA  850

seq1  ATTCAAGCAGGTCAGGAGCAGGAGCTGATGCAAAAGCCATGGAGGGATGT  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTCAAGCAGGTCATGAGCAGGAGCTGATGCAAAAGCCATGGAGGGATGT  900

seq1  TCATTACTAACTTGCTTCCCCTGGCTTGCTCAGTCTGCTCTCTTATAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTAACTTGCTTCCCCTGGCTTGCTCAGTCTGCTCTCTTATAGAA  950

seq1  CCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAAGGGCCTTTTCCCC  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCAAGACTACCAGCCCAGAGATGGT-CCACCCACAAAGGGCCTTTTCCCC  999

seq1  TGGATCACTAATTGAGAAAAGTGCC-TTACA-GTTGTATCTC-ATGGAGG  1047
      ||||||||||||||||||||||||| ||||| |||||   || |||||||
seq2  TGGATCACTAATTGAGAAAAGTGCCTTTACAGGTTGTTCTTCAATGGAGG  1049

seq1  CATTTCCTCAACTG-AAGCTCCTTTCTCTGTGATAAC-TCCAGCTGT-GT  1094
      |||||||||||||| ||||||| |||||||||||||| ||||||||| ||
seq2  CATTTCCTCAACTGAAAGCTCC-TTCTCTGTGATAACTTCCAGCTGTGGT  1098

seq1  CAAGTT-GACACAAAACTAGCCAG-TAC-AATTGACCTTTTGTTAAC-TT  1140
      |||||| |||||||| |||  ||| ||| |||||| |  |||||||| ||
seq2  CAAGTTGGACACAAACCTAAGCAGATACAAATTGAAC-CTTGTTAACTTT  1147

seq1  AACG-CATAAACACATCACT  1159
      |||| |||||||| ||||||
seq2  AACGCCATAAACA-ATCACT  1166