BAC Information

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BAC

Clone NameB6Ng01-112N05
Chromosome4 (Build37)
Map Location 48,161,227 - 48,332,791
singlet/doubletdoublet
Overlap geneStx17, Txndc4, Invs
Upstream geneCol15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b, LOC100040788, Nr4a3
Downstream geneTex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112N05.bB6Ng01-112N05.g
ACCDH918785DH918786
length1,1441,094
definitionDH918785|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N05, 5' end.DH918786|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,161,227 - 48,162,372)(48,331,690 - 48,332,791)
sequence
gaattctccaggcatggggaaaatgtgatgtgaagactgtggtgggagga
tgtttggcatgtccaccaggtgctaaggaagtcgtgtggcttgtgtgagt
aaggaggatgcaggagatgaagtcagattccagctgggtcaaaccatagg
aggccctgtaggagacaggaactcagagctgggaggaaagctctggaagg
ttctgagcatatagtggcctgagacaacctaaagacacctcttgtgaatt
ataacaatgaaagtctagaatgggcatggataggcatagatgaagaagac
agctagtgtaaccattgaaatactgtttgttagacaagtttctgtgtggc
ttctactggtgagaagtgaccagatgtctgctcactgatacagagaacaa
tcgaccaaagaagtggtgccactaacatctaacttagtggaccagtgagc
ttattactaagttacttacaggagtatggacgagttgaaggccgctgcat
ccctaaaaacaatccacttcaacttgggccacaacctacagaagatgaat
ccctggagttccctgaccgtaaggcaccatgatagtcagagaagcccgtc
tatccagcagtagaccttgtaggaaggaccttgtagctcttctcagtttc
aagaacttccgcagacctgtgagttgtttacttcctgagccttttagttc
tgttaacttcctgttaacaagcctctttccaggacagagtattttaattt
gggagacattgtacaacatcagtgcaggtacacaccataccccttcccca
catcagttactccaggggcctaatggggcctgactgttgttagctgctat
ctttgtaactctactagacgattcttacccgcagtgtaatagaagaagga
gctgcttgatagcaacactaacatggagcatgtttagaaaaaatatacat
gcatgtcctttaaacacatagaacatttaaattgtaaggaattataacaa
caccattcgttaccaccatcttatgccagttccctcatattttttcaagt
ttctttcctttcctgtcttcaaggaagctgttagttctaagaaagcctag
atgccctctcctccactccaccttcccatcccccactgcatctg
gaattccaggctagcctgggttaaaagatactctgtcctgtccctaacaa
aaaatcagtaggcaggttatacatagacaaaagacaagggcttgtttcag
atatgttgaaactgacattagaaagatattcagctatggatttctagata
atagctggaaaaacaagtctggaatttgaaagaagggttagttctagaaa
caaagatgtgagagaaaagcctgaaagttctgtgagtgaaagaagagcag
tgtaaaaagaaacaagggttcctgcagggttatagaggtcaacagaaaaa
ctgagaggagcaagcaagccatcaggtgtgaatgccagagaaagaccaaa
gaagaaggacagagggaaaagtaggccaactctggctaggcctcctgttg
tcctttgttagaactataaacaaatcattttctgtatcctatgagattaa
tataaaacagacatataagatacagctataaaagttgtctttccctatat
atttttacttggttttggaagaatttcagggaaaataatttgaaaatgaa
attcaaagttgttaaaatttgattagtttctttatccaaagaattaagag
ttccatgacttttgatttaaacagacagcttggttcaggcaaatggcaga
tcaaaagggaaagagccatgaggaggaggcaaatgattagccagaaggta
agcggcgtggagatggtgacatatgacaacagttcttttttttttttttt
cacatcttcaccaatgtgagctgacacttgaggttttttttaaaaatatt
ttttattaggtattttcctcatttacatttccaatgctatcccaaaattc
ccccatacccttccccccactctcttaactttaccagttttttgagtcaa
tgagaaaaagtattttgaaggttagatgtgtaaagagctatatgtgtaaa
atatttttgctagtaaggttaaagtcagtaaatgtgccagtctactattt
ttccctattaatgctacttataaagtacttatacatttaatatattattt
atatatagtctcaggtctttaaaggtgaaattcacaagaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_48161227_48162372
seq2: B6Ng01-112N05.b_49_1192

seq1  GAATTCTCCAGGCATGGGGAAAATGTGATGTGAAGACTGTGGTGGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGGCATGGGGAAAATGTGATGTGAAGACTGTGGTGGGAGGA  50

seq1  TGTTTGGCATGTCCACCAGGTGCTAAGGAAGTCGTGTGGCTTGTGTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCATGTCCACCAGGTGCTAAGGAAGTCGTGTGGCTTGTGTGAGT  100

seq1  AAGGAGGATGCAGGAGATGAAGTCAGATTCCAGCTGGGTCAAACCATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGATGCAGGAGATGAAGTCAGATTCCAGCTGGGTCAAACCATAGG  150

seq1  AGGCCCTGTAGGAGACAGGAACTCAGAGCTGGGAGGAAAGCTCTGGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGTAGGAGACAGGAACTCAGAGCTGGGAGGAAAGCTCTGGAAGG  200

seq1  TTCTGAGCATATAGTGGCCTGAGACAACCTAAAGACACCTCTTGTGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCATATAGTGGCCTGAGACAACCTAAAGACACCTCTTGTGAATT  250

seq1  ATAACAATGAAAGTCTAGAATGGGCATGGATAGGCATAGATGAAGAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATGAAAGTCTAGAATGGGCATGGATAGGCATAGATGAAGAAGAC  300

seq1  AGCTAGTGTAACCATTGAAATACTGTTTGTTAGACAAGTTTCTGTGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTGTAACCATTGAAATACTGTTTGTTAGACAAGTTTCTGTGTGGC  350

seq1  TTCTACTGGTGAGAAGTGACCAGATGTCTGCTCACTGATACAGAGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGGTGAGAAGTGACCAGATGTCTGCTCACTGATACAGAGAACAA  400

seq1  TCGACCAAAGAAGTGGTGCCACTAACATCTAACTTAGTGGACCAGTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACCAAAGAAGTGGTGCCACTAACATCTAACTTAGTGGACCAGTGAGC  450

seq1  TTATTACTAAGTTACTTACAGGAGTATGGACGAGTTGAAGGCCGCTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTAAGTTACTTACAGGAGTATGGACGAGTTGAAGGCCGCTGCAT  500

seq1  CCCTAAAAACAATCCACTTCAACTTGGGCCACAACCTACAGAAGATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAACAATCCACTTCAACTTGGGCCACAACCTACAGAAGATGAAT  550

seq1  CCCTGGAGTTCCCTGACCGTAAGGCACCATGATAGTCAGAGAAGCCCGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGTTCCCTGACCGTAAGGCACCATGATAGTCAGAGAAGCCCGTC  600

seq1  TATCCAGCAGTAGACCTTGTAGGAAGGACCTTGTAGCTCTTCTCAGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGCAGTAGACCTTGTAGGAAGGACCTTGTAGCTCTTCTCAGTTTC  650

seq1  AAGAACTTCCGCAGACCTGTGAGTTGTTTACTTCCTGAGCCTTTTAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTCCGCAGACCTGTGAGTTGTTTACTTCCTGAGCCTTTTAGTTC  700

seq1  TGTTAACTTCCTGTTAACAAGCCTCTTTCCAGGACAGAGTATTTTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACTTCCTGTTAACAAGCCTCTTTCCAGGACAGAGTATTTTAATTT  750

seq1  GGGAGACATTGTACAACATCAGTGCAGGTACACACCATACCCCTTCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACATTGTACAACATCAGTGCAGGTACACACCATACCCCTTCCCCA  800

seq1  CATCAGTTACTCCAGGGGCCTAATGGGGCCTGACTGTTGTTAGCTGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTACTCCAGGGGCCTAATGGGGCCTGACTGTTGTTAGCTGCTAT  850

seq1  CTTTGTAACTCTACTAGACGATTCTTACCCGCAGTGTAATAGAAGAAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAACTCTACTAGACGATTCTTACCCGCAGTGTAATAGAAGAAGGA  900

seq1  GCTGCTTGATAGCAACACTAACATGGAGCATGTTTAGAAAAAAATTATAC  950
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  GCTGCTTGATAGCAACACTAACATGGAGCATGTTTAGAAAAAA--TATAC  948

seq1  ATGCATGTCCTTTAAACACATAGAAACATTTAAAATTGTAAGGTATTATA  1000
      ||||||||||||||||||||||| ||||||| ||||||||||| ||||||
seq2  ATGCATGTCCTTTAAACACATAG-AACATTT-AAATTGTAAGGAATTATA  996

seq1  ACAAACACCATGCGTTTACCACACATC-TATGCCAGTT-CCTCATATTTG  1048
      || |||||||| || ||||||| |||| |||||||||| |||||||||| 
seq2  AC-AACACCATTCG-TTACCAC-CATCTTATGCCAGTTCCCTCATATTTT  1043

seq1  TCACAGTTCCTTCCTTTTCCTGTC-TCAAGGAAGCTGTTAGTTCTAGTAA  1097
      |   |||| ||| | ||||||||| |||||||||||||||||||||  ||
seq2  TTCAAGTTTCTTTCCTTTCCTGTCTTCAAGGAAGCTGTTAGTTCTAAGAA  1093

seq1  AGCTCAG-TGCGCCTTCCTCCA-TCCCACTTCCCATCCCCCACTGCATCT  1145
      |||  || ||| |  ||||||| |||  ||||||||||||||||||||||
seq2  AGCCTAGATGCCCTCTCCTCCACTCCACCTTCCCATCCCCCACTGCATCT  1143

seq1  G  1146
      |
seq2  G  1144

seq1: chr4_48331690_48332791
seq2: B6Ng01-112N05.g_67_1160 (reverse)

seq1  TTTTTTCCTTTGTGATTTTTCACTTTAAAAGGACTGAGAACTATATAT-A  49
      |||||||  ||||||  |||||| || ||||  ||||| ||||||||| |
seq2  TTTTTTC--TTGTGA-ATTTCACCTTTAAAGACCTGAG-ACTATATATAA  46

seq1  ATAATATATTAAATGTATAAAGTACTTTATAAGTAGCATTAATTAGGGAA  99
      |||||||||||||||||| ||||||||||||||||||||||||  || ||
seq2  ATAATATATTAAATGTAT-AAGTACTTTATAAGTAGCATTAATAGGGAAA  95

seq1  AATAGTAGACTTGGCACATTTACTGACTTTAACCTTACTAGCAAAAATAT  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAGAC-TGGCACATTTACTGACTTTAACCTTACTAGCAAAAATAT  144

seq1  TTTAACACATATAGCTCTTTACACATCTAACCTTCAAAATAACTTTTTTC  199
      ||| |||||||||||||||||||||||||||||||||||||   ||||||
seq2  TTT-ACACATATAGCTCTTTACACATCTAACCTTCAAAATA--CTTTTTC  191

seq1  TCATTGACTCAAAAAACTGGTAAAGTTAAGAGAGTGGGGGGAAGGGTATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGACTCAAAAAACTGGTAAAGTTAAGAGAGTGGGGGGAAGGGTATG  241

seq1  GGGGAATTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATA  291

seq1  AAAAATATTTTTAAAAAAAACCTCAAGTGTCAGCTCACATTGGTGAAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTTTAAAAAAAACCTCAAGTGTCAGCTCACATTGGTGAAGAT  341

seq1  GTGAAAAAAAAAAAAAAAGAACTGTTGTCATATGTCACCATCTCCACGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAAAAAAAAAAAAGAACTGTTGTCATATGTCACCATCTCCACGCC  391

seq1  GCTTACCTTCTGGCTAATCATTTGCCTCCTCCTCATGGCTCTTTCCCTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCTTCTGGCTAATCATTTGCCTCCTCCTCATGGCTCTTTCCCTTT  441

seq1  TGATCTGCCATTTGCCTGAACCAAGCTGTCTGTTTAAATCAAAAGTCATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGCCATTTGCCTGAACCAAGCTGTCTGTTTAAATCAAAAGTCATG  491

seq1  GAACTCTTAATTCTTTGGATAAAGAAACTAATCAAATTTTAACAACTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTTAATTCTTTGGATAAAGAAACTAATCAAATTTTAACAACTTTG  541

seq1  AATTTCATTTTCAAATTATTTTCCCTGAAATTCTTCCAAAACCAAGTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTTTCAAATTATTTTCCCTGAAATTCTTCCAAAACCAAGTAAA  591

seq1  AATATATAGGGAAAGACAACTTTTATAGCTGTATCTTATATGTCTGTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAGGGAAAGACAACTTTTATAGCTGTATCTTATATGTCTGTTTT  641

seq1  ATATTAATCTCATAGGATACAGAAAATGATTTGTTTATAGTTCTAACAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATCTCATAGGATACAGAAAATGATTTGTTTATAGTTCTAACAAA  691

seq1  GGACAACAGGAGGCCTAGCCAGAGTTGGCCTACTTTTCCCTCTGTCCTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACAGGAGGCCTAGCCAGAGTTGGCCTACTTTTCCCTCTGTCCTTC  741

seq1  TTCTTTGGTCTTTCTCTGGCATTCACACCTGATGGCTTGCTTGCTCCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGTCTTTCTCTGGCATTCACACCTGATGGCTTGCTTGCTCCTCT  791

seq1  CAGTTTTTCTGTTGACCTCTATAACCCTGCAGGAACCCTTGTTTCTTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTCTGTTGACCTCTATAACCCTGCAGGAACCCTTGTTTCTTTTT  841

seq1  ACACTGCTCTTCTTTCACTCACAGAACTTTCAGGCTTTTCTCTCACATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCTCTTCTTTCACTCACAGAACTTTCAGGCTTTTCTCTCACATCT  891

seq1  TTGTTTCTAGAACTAACCCTTCTTTCAAATTCCAGACTTGTTTTTCCAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTAGAACTAACCCTTCTTTCAAATTCCAGACTTGTTTTTCCAGC  941

seq1  TATTATCTAGAAATCCATAGCTGAATATCTTTCTAATGTCAGTTTCAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTAGAAATCCATAGCTGAATATCTTTCTAATGTCAGTTTCAACA  991

seq1  TATCTGAAACAAGCCCTTGTCTTTTGTCTATGTATAACCTGCCTACTGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAAACAAGCCCTTGTCTTTTGTCTATGTATAACCTGCCTACTGAT  1041

seq1  TTTTTGTTAGGGACAGGACAGAGTATCTTTTAACCCAGGCTAGCCTGGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTAGGGACAGGACAGAGTATCTTTTAACCCAGGCTAGCCTGGAA  1091

seq1  TTC  1102
      |||
seq2  TTC  1094