BAC Information

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BAC

Clone NameB6Ng01-112N10
Chromosome4 (Build37)
Map Location 57,943,396 - 58,033,826
singlet/doubletdoublet
Overlap geneTxn1, Txndc8
Upstream geneD730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik
Downstream geneSvep1, Musk, Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112N10.bB6Ng01-112N10.g
ACCDH918795DH918796
length1,167984
definitionDH918795|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N10, 5' end.DH918796|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,032,643 - 58,033,826)(57,943,396 - 57,944,370)
sequence
gaattcacacatttctatgtatcacatgttaacataaatgttaacacaat
agtctttcatagacagattcacttttatacacctttaccatcgatgattt
tcataactttgtttgaagctaagaaagttttacaaaagaaaggcaatggt
attaactttatatatctattttttgtatcagttatttaggaatcccatat
catgtaccctaataaaactcacctctgagtcctctcatgtttgctccaca
tacaactcctgtgacctaccttcccctcaaagaaagaagaaagggaggga
agagtccgtatactcactggagcatggtcaaattcctagtggccaggccc
gcaagggaagatgagtctttctccatctgcatttgtgctggaagccatca
actgaggagaaccattcagctgccagggaagattggggccagctctctcc
agcccagactttaacatggattaaggggtatctcagaccacaaacatctg
cgtgggcttcagtggtaacactagccactggcaccatggaccacagtggt
tcttcaaggaggtccaatccagaaagtgaccctttcttcatctctggtct
atatcattgcctggagccagggggatccagagatcagcaggctggggtct
gagtctgcatctgcataagctccaggctgttgcataccatccaccaaccc
tattaggcaatgacagtatgtcaacctcagccctctctcatctgtcacta
ccatcacatccccagttctgcctctgtctgtagctctttttttctctctc
gctgttccttttttgttgttgttcccaattttttccacctccccatcact
tccttgttcatcacagtggcacccaccacctcacacctcgagaaagggat
ggcactagatatccagcttttatattttaattgactatgtaattttaaaa
agtatggatctggggtaggatagatacatacatcactcagaaatgccttg
aaattgtgttatcccacatgattcctggtagttcttgagaatggaaaacg
taatcaagaaaaattggtggtaaattggctgggagaaactatttcttttc
cttctttcttaaccccaaaatatggaaatactaagagtctctttccttaa
cccaaaataattggaaa
gaattccaggacagcagggctacacagagaaaccctgtttcaaaaaaact
gagagatgagggtgggggtggggtggcagcaatagggcataagtctcttg
gttgggagcactgggtgacaggagcaagcagccagtctgtcacactgcag
tagcagagagggatcacaggaagctggttctcattgttgtacttcctcca
tcaaggctccatgtgccaaaaggtttcacaaccttctcaaacgtccccag
ctgctgagaatcaggtgttcccacacatgagtctatagggaacgggtcat
gttcaaaccacaacagaccctgtctcaaaaccaaaaaataaaaacttatg
aaaagaatcatctgacgagtgtctctaaaaaatgaagtgttctgggttca
tgtgacctctcttcagatcacaggagagggcagtagggcccagtcatgag
tactttcgaaacttgccaaagtgcagtggaaaccaagagccgctcaagta
ttgaagtggttctttgtcatgctgcttgctttcctttagagcaatgtttt
gtctgtttacattacaggtatttctggggctagggggaggaagaagagaa
gggatcccttggggtctgcatcttcctcaattctctgcccagggtccttg
gctctgtcttcatataggacccagactgtgtgcatgcatccctgaactct
gaactttcacactggttcatggaagcaaggggtcatccaactgcacagac
tttcagcttgaacttgactcaccccctctgacctgtaagtttgtgctgtc
ttgttattcaggctgtgagctttgctttccaagtcctctgctctgtttag
tccttttgctctgtaggcatgttgaacgtgtgcttagatctccttgtgtg
catgaaacttccaggaagaattcgattgaaatgtgtctagttcttaacat
gagccaatcatggcctgtgcagatctggtagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58032643_58033826
seq2: B6Ng01-112N10.b_47_1213 (reverse)

seq1  TTTCCAATTTATTTTGTGGGTTAAGAAAGAAAGACTCTTTAGTATTTTCC  50
      ||||||| ||||||  ||||||||| || | |||||| |||||| |||||
seq2  TTTCCAA-TTATTT--TGGGTTAAGGAA-AGAGACTC-TTAGTA-TTTCC  44

seq1  AATTTATTTTGTGGGTTAAGAAAGAAGGGAGAAGAAAATAGTTTTCTCCA  100
      |   ||||||| |||||||||||||| ||| ||| |||||||||   |||
seq2  A---TATTTTG-GGGTTAAGAAAGAA-GGAAAAG-AAATAGTTTCTCCCA  88

seq1  GCCAATTTACCACCAATTTTTCTTGATTACGTTTTTCCATTCTCATAGAA  150
      ||||||||||||||||||||||||||||||| ||||||||||||| || |
seq2  GCCAATTTACCACCAATTTTTCTTGATTACG-TTTTCCATTCTCA-AG-A  135

seq1  ACTACCAGGAATCATGTGTGATAACACAATTTCAAGGCATTTCTGAGTGA  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACTACCAGGAATCATGTGGGATAACACAATTTCAAGGCATTTCTGAGTGA  185

seq1  TGTATGTATCTATTCCTACCCCAGATCCATACTTTTTAAAAATTACATAG  250
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TGTATGTATCTA-TCCTACCCCAGATCCATACTTTTT-AAAATTACATAG  233

seq1  TCAATTAAAATATAAAAGCTGGATATCTAGTGCCATCCCTTTCTCGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAAAATATAAAAGCTGGATATCTAGTGCCATCCCTTTCTCGAGGT  283

seq1  GTGAGGTGGTGGGTGCCACTGTGATGAACAAGGAAGTGATGGGGAGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGGTGGGTGCCACTGTGATGAACAAGGAAGTGATGGGGAGGTGG  333

seq1  AAAAAATTGGGAACAACAACAAAAAAGGAACAGCGAGAGAGAAAAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTGGGAACAACAACAAAAAAGGAACAGCGAGAGAGAAAAAAAGA  383

seq1  GCTACAGACAGAGGCAGAACTGGGGATGTGATGGTAGTGACAGATGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGACAGAGGCAGAACTGGGGATGTGATGGTAGTGACAGATGAGAG  433

seq1  AGGGCTGAGGTTGACATACTGTCATTGCCTAATAGGGTTGGTGGATGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGAGGTTGACATACTGTCATTGCCTAATAGGGTTGGTGGATGGTA  483

seq1  TGCAACAGCCTGGAGCTTATGCAGATGCAGACTCAGACCCCAGCCTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGCCTGGAGCTTATGCAGATGCAGACTCAGACCCCAGCCTGCTG  533

seq1  ATCTCTGGATCCCCCTGGCTCCAGGCAATGATATAGACCAGAGATGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGATCCCCCTGGCTCCAGGCAATGATATAGACCAGAGATGAAGA  583

seq1  AAGGGTCACTTTCTGGATTGGACCTCCTTGAAGAACCACTGTGGTCCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCACTTTCTGGATTGGACCTCCTTGAAGAACCACTGTGGTCCATG  633

seq1  GTGCCAGTGGCTAGTGTTACCACTGAAGCCCACGCAGATGTTTGTGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGTGGCTAGTGTTACCACTGAAGCCCACGCAGATGTTTGTGGTCT  683

seq1  GAGATACCCCTTAATCCATGTTAAAGTCTGGGCTGGAGAGAGCTGGCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACCCCTTAATCCATGTTAAAGTCTGGGCTGGAGAGAGCTGGCCCC  733

seq1  AATCTTCCCTGGCAGCTGAATGGTTCTCCTCAGTTGATGGCTTCCAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCCTGGCAGCTGAATGGTTCTCCTCAGTTGATGGCTTCCAGCAC  783

seq1  AAATGCAGATGGAGAAAGACTCATCTTCCCTTGCGGGCCTGGCCACTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGATGGAGAAAGACTCATCTTCCCTTGCGGGCCTGGCCACTAGG  833

seq1  AATTTGACCATGCTCCAGTGAGTATACGGACTCTTCCCTCCCTTTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGACCATGCTCCAGTGAGTATACGGACTCTTCCCTCCCTTTCTTCT  883

seq1  TTCTTTGAGGGGAAGGTAGGTCACAGGAGTTGTATGTGGAGCAAACATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAGGGGAAGGTAGGTCACAGGAGTTGTATGTGGAGCAAACATGA  933

seq1  GAGGACTCAGAGGTGAGTTTTATTAGGGTACATGATATGGGATTCCTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTCAGAGGTGAGTTTTATTAGGGTACATGATATGGGATTCCTAAA  983

seq1  TAACTGATACAAAAAATAGATATATAAAGTTAATACCATTGCCTTTCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGATACAAAAAATAGATATATAAAGTTAATACCATTGCCTTTCTTT  1033

seq1  TGTAAAACTTTCTTAGCTTCAAACAAAGTTATGAAAATCATCGATGGTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACTTTCTTAGCTTCAAACAAAGTTATGAAAATCATCGATGGTAA  1083

seq1  AGGTGTATAAAAGTGAATCTGTCTATGAAAGACTATTGTGTTAACATTTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTATAAAAGTGAATCTGTCTATGAAAGACTATTGTGTTAACATTTA  1133

seq1  TGTTAACATGTGATACATAGAAATGTGTGAATTC  1184
      ||||||||||||||||||||||||||||||||||
seq2  TGTTAACATGTGATACATAGAAATGTGTGAATTC  1167

seq1: chr4_57943396_57944370
seq2: B6Ng01-112N10.g_71_1054

seq1  GAATTCCAGGACAGCAGGGCTACACAGAGAAACCCTGTTTCAAAAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCAGGGCTACACAGAGAAACCCTGTTTCAAAAAAACT  50

seq1  GAGAGATGAGGGTGGGGGTGGGGTGGCAGCAATAGGGCATAAGTCTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGAGGGTGGGGGTGGGGTGGCAGCAATAGGGCATAAGTCTCTTG  100

seq1  GTTGGGAGCACTGGGTGACAGGAGCAAGCAGCCAGTCTGTCACACTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGAGCACTGGGTGACAGGAGCAAGCAGCCAGTCTGTCACACTGCAG  150

seq1  TAGCAGAGAGGGATCACAGGAAGCTGGTTCTCATTGTTGTACTTCCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGAGGGATCACAGGAAGCTGGTTCTCATTGTTGTACTTCCTCCA  200

seq1  TCAAGGCTCCATGTGCCAAAAGGTTTCACAACCTTCTCAAACGTCCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTCCATGTGCCAAAAGGTTTCACAACCTTCTCAAACGTCCCCAG  250

seq1  CTGCTGAGAATCAGGTGTTCCCACACATGAGTCTATAGGGAACGGGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGAATCAGGTGTTCCCACACATGAGTCTATAGGGAACGGGTCAT  300

seq1  GTTCAAACCACAACAGACCCTGTCTCAAAACCAAAAAATAAAAACTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACCACAACAGACCCTGTCTCAAAACCAAAAAATAAAAACTTATG  350

seq1  AAAAGAATCATCTGACGAGTGTCTCTAAAAAATGAAGTGTTCTGGGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATCATCTGACGAGTGTCTCTAAAAAATGAAGTGTTCTGGGTTCA  400

seq1  TGTGACCTCTCTTCAGATCACAGGAGAGGGCAGTAGGGCCCAGTCATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCTCTCTTCAGATCACAGGAGAGGGCAGTAGGGCCCAGTCATGAG  450

seq1  TACTTTCGAAACTTGCCAAAGTGCAGTGGAAACCAAGAGCCGCTCAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCGAAACTTGCCAAAGTGCAGTGGAAACCAAGAGCCGCTCAAGTA  500

seq1  TTGAAGTGGTTCTTTGTCATGCTGCTTGCTTTCCTTTAGAGCAATGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTGGTTCTTTGTCATGCTGCTTGCTTTCCTTTAGAGCAATGTTTT  550

seq1  GTCTGTTTACATTACAGGTATTTCTGGGGCTAGGGGGAGGAAGAAGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTACATTACAGGTATTTCTGGGGCTAGGGGGAGGAAGAAGAGAA  600

seq1  GGGATCCCTTGGGGTCTGCATCTTCCTCAATTCTCTGCCCAGGGTCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCCTTGGGGTCTGCATCTTCCTCAATTCTCTGCCCAGGGTCCTTG  650

seq1  GCTCTGTCTTCATATAGGACCCAGACTGTGTGCATGCATCCCTGAACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCTTCATATAGGACCCAGACTGTGTGCATGCATCCCTGAACTCT  700

seq1  GAACTTTCACACTGGTTCAGGGAAGCAA-GGGTCATCCAACTGCACAGAC  749
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  GAACTTTCACACTGGTTCATGGAAGCAAGGGGTCATCCAACTGCACAGAC  750

seq1  TTTCAGCTTGAACTTGACTCACCCCCTCTGACCTGTAAGTTTGTGCTGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTTGAACTTGACTCACCCCCTCTGACCTGTAAGTTTGTGCTGTC  800

seq1  TTGTTATTCAGGCTGTGAGCTTTTGCTTTCCAAGTCCTCTGCTCTG-TTA  848
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TTGTTATTCAGGCTGTGAGC-TTTGCTTTCCAAGTCCTCTGCTCTGTTTA  849

seq1  GTCC-TTTGCTCTGTAGGCATG-TGAACGTGTGCATAGATCTCCATGTGT  896
      |||| ||||||||||||||||| ||||||||||| ||||||||| |||||
seq2  GTCCTTTTGCTCTGTAGGCATGTTGAACGTGTGCTTAGATCTCCTTGTGT  899

seq1  GCATGAAAC-TCCAGG-AGAA-TCGATTGAAA-GTGCCCAG-TCCTAACA  941
      ||||||||| |||||| |||| |||||||||| ||| | || || |||||
seq2  GCATGAAACTTCCAGGAAGAATTCGATTGAAATGTGTCTAGTTCTTAACA  949

seq1  TGAGCCAAACATTGGCTGTGCAGATCT-GTAGCTT  975
      |||||||| ||| | |||||||||||| ||||| |
seq2  TGAGCCAATCATGGCCTGTGCAGATCTGGTAGCCT  984