BAC Information

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BAC

Clone NameB6Ng01-113C21
Chromosome4 (Build37)
Map Location 92,390,601 - 92,512,107
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113C21.bB6Ng01-113C21.g
ACCDH919040DH919041
length1,0771,086
definitionDH919040|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C21, 5' end.DH919041|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,390,601 - 92,391,672)(92,511,027 - 92,512,107)
sequence
gaattccttaaagagaaaataaataaattctttaaagaaatctaggaaaa
cacaaatagtacaaggaaatgaatctcttaaagaaatccagaggtaccaa
aataaaatgcttcaatatctgaaaatgcaaattgaataaataaagaaaat
ccaagaggagaaaaatctggatctgaaaaaacaaaatagaaatttaaaca
ggatctttataagcaaacttaaacaacctaacttgttttatgttttgaga
ccagtagaattagattcccctgcaaataccaatacaaaaataattctaag
gagtacaaaaactgtaccttcacatataaataaatgccaattgatttctc
atacttttggtttaacttgatctcttattttttaaattttattgagattt
aaagactcctaagagtataagtattgaatatgcacatgcatgcagtgcca
gtgaagacagaaagagagcctttggagcactggaactagagttgcttata
tcttttataagttttatgactgtcatttctttttctatatctactatgca
atagttaagtaaaattaagatccaacttcatatcccacaagacagagtaa
atggtacttgacaagtgaataaacttgtatctgtttattaagtccccaac
ccaagtctaccaagtttacctctatttatgtatattgtatcattggcatc
atctgcttatatgactacactaggttacaaagattgataaatgatacaga
atctgtgtgtgtgttatgtttgtatatgtgtacatatacatatggctaga
taattaaaaacagaagactgattaaagatgataaagcataaataattgat
ggatagctagaacacagacacacagattcagagtttatatacccatggct
ttcagggtctaaataatagctgaaggtaagaatacaatgtctgtttactg
tgccttttcctcaagttgcactataatacatcaagtggataaatgattct
ttgaaagcataattggaatagatgagtaaaaatgtctatttccaaataag
ctttggcttttttctgaaaattcagtt
gaattctaggaagctcatctaaaaaatgtgatggatgataaaacaaattc
aggtctgctgagcaataaggtccagttctgtgcaatacactatcgctttg
taaaagtacagctcagtctcacagcaaaccactaagtgaaatgcagatat
ttaaagaatcacctttgattcagcacaagagagaaataaacttacctgta
gtttatatttttatttataggcaaaatgtaccagggaaatatcatgatgg
gttcaagtcctaaatactatatgctttgatagactttatcattgtttaaa
ctgtagagtatatgaaagtataagtttatttttctcagctggagctttaa
attctccctgaacttgagcgtcatttttagagaaagacatcactcaggcc
taactcctttagacacatttgaacagattttcatattgatgtgggagttt
gaaacattggaaaaaaatagttactctgtagaaattcatatttctaccaa
ataacttccaaagatgtataatactcttcttaatgctttatagtgtttta
ttaatctgagaacataattgatctctactctatgatatctaagtacgttt
gtttatcttgtacacagtgttagtgtaagacctatttgaagccattctct
ccttatataaaataattacaaattaattacagtggtaattttctattact
caatacgttaatatattcgtatatgatacatattttaactattgttttca
aacttactaaaacctttaaaatagtctatttaattaatgtgaaatatgaa
ccttaattaaatagttcaggctttgaggggatacatggcagggaagggat
gatgaccatcaatactactgttacttcacaagtcacactgctttcacact
caagaagtaataaagtatagtaataaagagagaaataaatgttggtaata
atcttacattttaccttttcctctgacatttgttcagtctggaagattcc
attcattgaatggtactgcttagcgtcaggtgtggacctttttgttcctt
cagtaatcattcggtaaaagaatgtctccatagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_92390601_92391672
seq2: B6Ng01-113C21.b_46_1122

seq1  GAATTCCTTAAAGAGAAAATAAATAAATTCTTTAAAGAAATCTAGGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAAGAGAAAATAAATAAATTCTTTAAAGAAATCTAGGAAAA  50

seq1  CACAAATAGTACAAGGAAATGAATCTCTTAAAGAAATCCAGAGGTACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATAGTACAAGGAAATGAATCTCTTAAAGAAATCCAGAGGTACCAA  100

seq1  AATAAAATGCTTCAATATCTGAAAATGCAAATTGAATAAATAAAGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGCTTCAATATCTGAAAATGCAAATTGAATAAATAAAGAAAAT  150

seq1  CCAAGAGGAGAAAAATCTGGATCTGAAAAAACAAAATAGAAATTTAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGGAGAAAAATCTGGATCTGAAAAAACAAAATAGAAATTTAAACA  200

seq1  GGATCTTTATAAGCAAACTTAAACAACCTAACTTGTTTTATGTTTTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTATAAGCAAACTTAAACAACCTAACTTGTTTTATGTTTTGAGA  250

seq1  CCAGTAGAATTAGATTCCCCTGCAAATACCAATACAAAAATAATTCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGAATTAGATTCCCCTGCAAATACCAATACAAAAATAATTCTAAG  300

seq1  GAGTACAAAAACTGTACCTTCACATATAAATAAATGCCAATTGATTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAAAAACTGTACCTTCACATATAAATAAATGCCAATTGATTTCTC  350

seq1  ATACTTTTGGTTTAACTTGATCTCTTATTTTTTAAATTTTATTGAGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTGGTTTAACTTGATCTCTTATTTTTTAAATTTTATTGAGATTT  400

seq1  AAAGACTCCTAAGAGTATAAGTATTGAATATGCACATGCATGCAGTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCCTAAGAGTATAAGTATTGAATATGCACATGCATGCAGTGCCA  450

seq1  GTGAAGACAGAAAGAGAGCCTTTGGAGCACTGGAACTAGAGTTGCTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGACAGAAAGAGAGCCTTTGGAGCACTGGAACTAGAGTTGCTTATA  500

seq1  TCTTTTATAAGTTTTATGACTGTCATTTCTTTTTCTATATCTACTATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATAAGTTTTATGACTGTCATTTCTTTTTCTATATCTACTATGCA  550

seq1  ATAGTTAAGTAAAATTAAGATCCAACTTCATATCCCACAAGACAGAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAAGTAAAATTAAGATCCAACTTCATATCCCACAAGACAGAGTAA  600

seq1  ATGGTACTTGACAAGTGAATAAACTTGTATCTGTTTATTAAGTCCCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACTTGACAAGTGAATAAACTTGTATCTGTTTATTAAGTCCCCAAC  650

seq1  CCAAGTCTACCAAGTTTACCTCTATTTATGTATATTGTATCATTGGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTACCAAGTTTACCTCTATTTATGTATATTGTATCATTGGCATC  700

seq1  ATCTGCTTATATGACTACACTAGGTTACAAAGATTGATAAATGATACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTATATGACTACACTAGGTTACAAAGATTGATAAATGATACAGA  750

seq1  ATCTGTGTGTGTGTTATGTTTGTATATGTGTACATATACATATGGCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTGTGTGTTATGTTTGTATATGTGTACATATACATATGGCTAGA  800

seq1  TAATTAAAAACAGAAGACTGATTAAAGATGATAAAGCATAAATAATTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAACAGAAGACTGATTAAAGATGATAAAGCATAAATAATTGAT  850

seq1  GGATAGCTAGAACACAGACACACAGATTCAGAGTTTATATACCCATGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCTAGAACACAGACACACAGATTCAGAGTTTATATACCCATGGCT  900

seq1  TTCAGGGTCTAAATAATAGCTGAAGGTAAGAATACAATGTCTGTTTACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTCTAAATAATAGCTGAAGGTAAGAATACAATGTCTGTTTACTG  950

seq1  TGCCTTTTCCTCAAGTTGCACTAT-ATACATCAAGT-GATAAATGATTC-  997
      |||||||||||||||||||||||| ||||||||||| |||||||||||| 
seq2  TGCCTTTTCCTCAAGTTGCACTATAATACATCAAGTGGATAAATGATTCT  1000

seq1  TTGAAAGCATAATT-GAATAGATGAGTAAAAATGTCTATTTCAAAATAGG  1046
      |||||||||||||| ||||||||||||||||||||||||||| ||||| |
seq2  TTGAAAGCATAATTGGAATAGATGAGTAAAAATGTCTATTTCCAAATAAG  1050

seq1  C-TTGGC-TTTTTCTGATAAATTCAGTT  1072
      | ||||| ||||||||| ||||||||||
seq2  CTTTGGCTTTTTTCTGA-AAATTCAGTT  1077

seq1: chr4_92511027_92512107
seq2: B6Ng01-113C21.g_66_1151 (reverse)

seq1  TTTCTAT-GAGACA-TCTTTTACAGAATGATTTAACTGAA-GAAC--AAA  45
      ||||||| |||||| |||||||| ||||||||  |||||| ||||  |||
seq2  TTTCTATGGAGACATTCTTTTACCGAATGATT--ACTGAAGGAACAAAAA  48

seq1  GGGTCACA-CTGACGCTTAGCAGTACCATTCCATGAATGGAATCT--CAG  92
      ||  |||| |||||||| ||||||||||||| |||||||||||||  |||
seq2  GGTCCACACCTGACGCTAAGCAGTACCATTCAATGAATGGAATCTTCCAG  98

seq1  ACTGAACAAATGTCAGAGGAAAAGGTAAAAATGTAAGATTAATACCAACA  142
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  ACTGAACAAATGTCAGAGGAAAAGGT-AAAATGTAAGATTATTACCAACA  147

seq1  TTTATTTCTCTCTTTATTACTATACTTTATTACTTCTTGAGTGTGGAAGC  192
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTATTTCTCTCTTTATTACTATACTTTATTACTTCTTGAGTGTGAAAGC  197

seq1  AGTGTGACTTGTGAAGTAACAGTAGTATTGATGGTCATCATCCCTTCCCT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGACTTGTGAAGTAACAGTAGTATTGATGGTCATCATCCCTTCCCT  247

seq1  GCCATGTATCCCCTCAAAGCCTGAACTATTTAATTAAGGTTCATATTTCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTATCCCCTCAAAGCCTGAACTATTTAATTAAGGTTCATATTTCA  297

seq1  CATTAATTAAATAGACTATTTTAAAGGTTTTAGTAAGTTTGAAAACAATA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTAAATAGACTATTTTAAAGGTTTTAGTAAGTTTGAAAACAATA  347

seq1  GTTAAAATATGTATCATATACGAATATATTAACGTATTGAGTAATAGAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATATGTATCATATACGAATATATTAACGTATTGAGTAATAGAAA  397

seq1  ATTACCACTGTAATTAATTTGTAATTATTTTATATAAGGAGAGAATGGCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCACTGTAATTAATTTGTAATTATTTTATATAAGGAGAGAATGGCT  447

seq1  TCAAATAGGTCTTACACTAACACTGTGTACAAGATAAACAAACGTACTTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGGTCTTACACTAACACTGTGTACAAGATAAACAAACGTACTTA  497

seq1  GATATCATAGAGTAGAGATCAATTATGTTCTCAGATTAATAAAACACTAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATAGAGTAGAGATCAATTATGTTCTCAGATTAATAAAACACTAT  547

seq1  AAAGCATTAAGAAGAGTATTATACATCTTTGGAAGTTATTTGGTAGAAAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTAAGAAGAGTATTATACATCTTTGGAAGTTATTTGGTAGAAAT  597

seq1  ATGAATTTCTACAGAGTAACTATTTTTTTCCAATGTTTCAAACTCCCACA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTCTACAGAGTAACTATTTTTTTCCAATGTTTCAAACTCCCACA  647

seq1  TCAATATGAAAATCTGTTCAAATGTGTCTAAAGGAGTTAGGCCTGAGTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGAAAATCTGTTCAAATGTGTCTAAAGGAGTTAGGCCTGAGTGA  697

seq1  TGTCTTTCTCTAAAAATGACGCTCAAGTTCAGGGAGAATTTAAAGCTCCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTCTAAAAATGACGCTCAAGTTCAGGGAGAATTTAAAGCTCCA  747

seq1  GCTGAGAAAAATAAACTTATACTTTCATATACTCTACAGTTTAAACAATG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAAAATAAACTTATACTTTCATATACTCTACAGTTTAAACAATG  797

seq1  ATAAAGTCTATCAAAGCATATAGTATTTAGGACTTGAACCCATCATGATA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTCTATCAAAGCATATAGTATTTAGGACTTGAACCCATCATGATA  847

seq1  TTTCCCTGGTACATTTTGCCTATAAATAAAAATATAAACTACAGGTAAGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGGTACATTTTGCCTATAAATAAAAATATAAACTACAGGTAAGT  897

seq1  TTATTTCTCTCTTGTGCTGAATCAAAGGTGATTCTTTAAATATCTGCATT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTCTCTTGTGCTGAATCAAAGGTGATTCTTTAAATATCTGCATT  947

seq1  TCACTTAGTGGTTTGCTGTGAGACTGAGCTGTACTTTTACAAAGCGATAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAGTGGTTTGCTGTGAGACTGAGCTGTACTTTTACAAAGCGATAG  997

seq1  TGTATTGCACAGAACTGGACCTTATTGCTCAGCAGACCTGAATTTGTTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGCACAGAACTGGACCTTATTGCTCAGCAGACCTGAATTTGTTTT  1047

seq1  ATCATCCATCACATTTTTTAGATGAGCTTCCTAGAATTC  1081
      |||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCATCACATTTTTTAGATGAGCTTCCTAGAATTC  1086