BAC Information

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BAC

Clone NameB6Ng01-113N16
Chromosome4 (Build37)
Map Location 148,218,869 - 148,375,300
singlet/doubletdoublet
Overlap geneCasz1, Pex14
Upstream geneMGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755
Downstream geneLOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113N16.bB6Ng01-113N16.g
ACCDH919538DH919539
length1,1091,009
definitionDH919538|Mus musculus domesticus DNA, BAC clone: B6Ng01-113N16, 5' end.DH919539|Mus musculus domesticus DNA, BAC clone: B6Ng01-113N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,374,194 - 148,375,300)(148,218,869 - 148,219,873)
sequence
gaattcacatggtatgcacacatacatgcaagcagaacactcatgcataa
aatttaaaacaacaacaaacacaggccaagagcaacttgaggaggaaaga
atttattacagaatctcacaggttacaatattctcatcaagggatgttag
ggcccttggcttcctcagctaccttctttatactgcctaagcctacctgt
ctagggaatggcaccacccacagtgggctgggccctcctatgtcaattag
caattgaaatgctttataggcctgcccacaagtcaatcaagaccactgct
ccattgacctcttcccagatgggtcggaggataccatgtgagtcagttct
cctactctgaaagtgccaggcatcaaacgcaggtcgtcgggcttgatggc
aaacacctctacccactgagcgcctccgtctctttaccttgaccttgctg
gttgatttttacgtgccctttctatgttacaaatattaattctttgtcat
gcttgtaaacatttcctccttttccttgccttttgcattgcttaataaat
aaaattattatacaatcatttctataatttttctgatattccttttttct
attaagaggttccttctctataattttttaatagtcataataataattac
agttacggctaacacttactaagcctgatgagatgttgggcaatgagcac
agcccccttttgagttgaggatttttacttttattttgatttggttttta
atcttctcgcaattgagaaagaaactaagagtgattcgtttgtctgtgaa
catggagctggtgatgagtattctccagggtttcttttagctcttttttt
tttgctgtctgctgtttgttgggaatttaacacgcaccagtttacttcac
gccccccctccatccctccgggctgttccacatcccatatctcggcctaa
tcccgcctccatgggggatgtccccacccccctaattttagcttttatat
taacttctggggcctacagtctgtgaaggtggataggtgacttctgactc
tcctctcagacattggtcaagcatgtcttcaggaaataaacaatggttgg
gcatccttc
gaattctgttttattctctgttgcccaagtgaaatttgagtctttgagga
gttctgaggggcatgatctgattaggtggcggctctttattaagacgcaa
gcctcaactgtcggactcctcctctcatggtccccggggtaatgaatctc
tcatgcaccacacactttcatcagggagtggacacaggtgtctgtctggc
cccacccccatctccagcatcggtctcctcccaggaagcaagttcacaaa
cagggtcttgtcactttaagtagcccccaaccagcttccctggcctgctt
catctggagctcgagtgcgtgttgttctaggaccgatcagctttagctaa
ttaataatctgacaggagacacccaggggattagctgccgagctgagctc
taccaagccttggcaaacgagccctgtactccttagggacatggaggtga
ctttgaggggtacgggcagaggggacctaccataggtgaacagtggtaca
gggcagtgtagggctgggtggggacagttaggtaaagaatctcttgaagg
gagtctgctttcccaagatgggcagaagagtggatgcgtctgtccactgc
cctttgagatcttgtcacacaccagaacacatcagcacctgtcagatgcc
ccttctgaatagctggattgcattgccagagttagccaattaagatacaa
gaccacaagtgaaatttgaagttcaggtaaacagcaaataattcttagct
ttaagaatattccatgtgatattggggatatactttacactcagagagta
ttcctcatgtattagattttcatgtttccctggcattgctgtcttttcct
ctgacaccattctagcctgagaggttctagaagctttgaggccttccctt
tcaaggaaaggctgggggtttcatcaaaagaggggagactctttgggagc
tctctgaggactggagtgatactggagtcactgtgacttcccctggcttt
gtcccggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_148374194_148375300
seq2: B6Ng01-113N16.b_48_1156 (reverse)

seq1  GAAGGATGACAAACAATGATTTATTCATTGAAGGACATGCTTGA-CAATG  49
      |||||||| | ||| ||  ||||||   |||| ||||||||||| |||||
seq2  GAAGGATGCCCAACCATTGTTTATTTCCTGAA-GACATGCTTGACCAATG  49

seq1  TCTGAGAGGAGAGTCAG-AGTCACCTATGCAACTTCACAGACTGTA-GCT  97
      ||||||||||||||||| |||||||||| || |||||||||||||| || 
seq2  TCTGAGAGGAGAGTCAGAAGTCACCTATCCACCTTCACAGACTGTAGGCC  99

seq1  CAAGAAGTTAAATATAAAAGCTAAAATAAGGGGGGTGGGGACAT-CCCCA  146
      | ||||||| ||||||||||||||||| |||||||||||||||| |||||
seq2  CCAGAAGTT-AATATAAAAGCTAAAATTAGGGGGGTGGGGACATCCCCCA  148

seq1  TGGAGGCGGGATAAGG-CGGGATATGGGATGTGGAACAG-CCGGA-GGAT  193
      |||||||||||| ||| || ||||||||||||||||||| ||||| ||||
seq2  TGGAGGCGGGATTAGGCCGAGATATGGGATGTGGAACAGCCCGGAGGGAT  198

seq1  GG-GGGGGGGCGTGGAGTAAACT-GTGCGTGTTAAATACACAAACAAACA  241
      || ||||||||||| |||||||| ||||||||||||| | | ||||||||
seq2  GGAGGGGGGGCGTGAAGTAAACTGGTGCGTGTTAAATTC-CCAACAAACA  247

seq1  GACAGACAGACAAAAAAAAAAAAGAGCTAAAAGAAACCCTGGAGAATACT  291
      | |||||||    |||||||||||||||||||||||||||||||||||||
seq2  G-CAGACAG---CAAAAAAAAAAGAGCTAAAAGAAACCCTGGAGAATACT  293

seq1  CATCACCAGCTCCATGTTCACAGACAAACGAATCACTCTTAGTTTCTTTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCAGCTCCATGTTCACAGACAAACGAATCACTCTTAGTTTCTTTC  343

seq1  TCAATTGCGAGAAGATTAAAAACCAAATCAAAATAAAAGTAAAAATCCTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGCGAGAAGATTAAAAACCAAATCAAAATAAAAGTAAAAATCCTC  393

seq1  AACTCAAAAGGGGGCTGTGCTCATTGCCCAACATCTCATCAGGCTTAGTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAAAGGGGGCTGTGCTCATTGCCCAACATCTCATCAGGCTTAGTA  443

seq1  AGTGTTAGCCGTAACTGTAATTATTATTATGACTATTAAAAAATTATAGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGCCGTAACTGTAATTATTATTATGACTATTAAAAAATTATAGA  493

seq1  GAAGGAACCTCTTAATAGAAAAAAGGAATATCAGAAAAATTATAGAAATG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACCTCTTAATAGAAAAAAGGAATATCAGAAAAATTATAGAAATG  543

seq1  ATTGTATAATAATTTTATTTATTAAGCAATGCAAAAGGCAAGGAAAAGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATAATAATTTTATTTATTAAGCAATGCAAAAGGCAAGGAAAAGGA  593

seq1  GGAAATGTTTACAAGCATGACAAAGAATTAATATTTGTAACATAGAAAGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTTTACAAGCATGACAAAGAATTAATATTTGTAACATAGAAAGG  643

seq1  GCACGTAAAAATCAACCAGCAAGGTCAAGGTAAAGAGACGGAGGCGCTCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTAAAAATCAACCAGCAAGGTCAAGGTAAAGAGACGGAGGCGCTCA  693

seq1  GTGGGTAGAGGTGTTTGCCATCAAGCCCGACGACCTGCGTTTGATGCCTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAGAGGTGTTTGCCATCAAGCCCGACGACCTGCGTTTGATGCCTG  743

seq1  GCACTTTCAGAGTAGGAGAACTGACTCACATGGTATCCTCCGACCCATCT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTCAGAGTAGGAGAACTGACTCACATGGTATCCTCCGACCCATCT  793

seq1  GGGAAGAGGTCAATGGAGCAGTGGTCTTGATTGACTTGTGGGCAGGCCTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGGTCAATGGAGCAGTGGTCTTGATTGACTTGTGGGCAGGCCTA  843

seq1  TAAAGCATTTCAATTGCTAATTGACATAGGAGGGCCCAGCCCACTGTGGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATTTCAATTGCTAATTGACATAGGAGGGCCCAGCCCACTGTGGG  893

seq1  TGGTGCCATTCCCTAGACAGGTAGGCTTAGGCAGTATAAAGAAGGTAGCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCATTCCCTAGACAGGTAGGCTTAGGCAGTATAAAGAAGGTAGCT  943

seq1  GAGGAAGCCAAGGGCCCTAACATCCCTTGATGAGAATATTGTAACCTGTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCCAAGGGCCCTAACATCCCTTGATGAGAATATTGTAACCTGTG  993

seq1  AGATTCTGTAATAAATTCTTTCCTCCTCAAGTTGCTCTTGGCCTGTGTTT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGTAATAAATTCTTTCCTCCTCAAGTTGCTCTTGGCCTGTGTTT  1043

seq1  GTTGTTGTTTTAAATTTTATGCATGAGTGTTCTGCTTGCATGTATGTGTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTTAAATTTTATGCATGAGTGTTCTGCTTGCATGTATGTGTG  1093

seq1  CATACCATGTGAATTC  1107
      ||||||||||||||||
seq2  CATACCATGTGAATTC  1109

seq1: chr4_148218869_148219873
seq2: B6Ng01-113N16.g_71_1079

seq1  GAATTCTGTTTTATTCTCTGTTGCCCAAGTGAAATTTGAGTCTTTGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTATTCTCTGTTGCCCAAGTGAAATTTGAGTCTTTGAGGA  50

seq1  GTTCTGAGGGGCATGATCTGATTAGGTGGCGGCTCTTTATTAAGACGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGGGGCATGATCTGATTAGGTGGCGGCTCTTTATTAAGACGCAA  100

seq1  GCCTCAACTGTCGGACTCCTCCTCTCATGGTCCCCGGGGTAATGAATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAACTGTCGGACTCCTCCTCTCATGGTCCCCGGGGTAATGAATCTC  150

seq1  TCATGCACCACACACTTTCATCAGGGAGTGGACACAGGTGTCTGTCTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCACCACACACTTTCATCAGGGAGTGGACACAGGTGTCTGTCTGGC  200

seq1  CCCACCCCCATCTCCAGCATCGGTCTCCTCCCAGGAAGCAAGTTCACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCATCTCCAGCATCGGTCTCCTCCCAGGAAGCAAGTTCACAAA  250

seq1  CAGGGTCTTGTCACTTTAAGTAGCCCCCAACCAGCTTCCCTGGCCTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTTGTCACTTTAAGTAGCCCCCAACCAGCTTCCCTGGCCTGCTT  300

seq1  CATCTGGAGCTCGAGTGCGTGTTGTTCTAGGACCGATCAGCTTTAGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGAGCTCGAGTGCGTGTTGTTCTAGGACCGATCAGCTTTAGCTAA  350

seq1  TTAATAATCTGACAGGAGACACCCAGGGGATTAGCTGCCGAGCTGAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATCTGACAGGAGACACCCAGGGGATTAGCTGCCGAGCTGAGCTC  400

seq1  TACCAAGCCTTGGCAAACGAGCCCTGTACTCCTTAGGGACATGGAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCCTTGGCAAACGAGCCCTGTACTCCTTAGGGACATGGAGGTGA  450

seq1  CTTTGAGGGGTACGGGCAGAGGGGACCTACCATAGGTGAACAGTGGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGGGTACGGGCAGAGGGGACCTACCATAGGTGAACAGTGGTACA  500

seq1  GGGCAGTGTAGGGCTGGGTGGGGACAGTTAGGTAAAGAATCTCTTGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTGTAGGGCTGGGTGGGGACAGTTAGGTAAAGAATCTCTTGAAGG  550

seq1  GAGTCTGCTTTCCCAAGATGGGCAGAAGAGTGGATGCGTCTGTCCACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGCTTTCCCAAGATGGGCAGAAGAGTGGATGCGTCTGTCCACTGC  600

seq1  CCTTTGAGATCTTGTCACACACCAGAACACATCAGCACCTGTCAGATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGATCTTGTCACACACCAGAACACATCAGCACCTGTCAGATGCC  650

seq1  CCTTCTGAATAGCTGGATTGCATTGCCAGAGTTAGCCAATTAAGATACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAATAGCTGGATTGCATTGCCAGAGTTAGCCAATTAAGATACAA  700

seq1  GACCACAAGTGAAATTTGAAGTTCAGGTAAACAGCAAATAATTCTTAGC-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GACCACAAGTGAAATTTGAAGTTCAGGTAAACAGCAAATAATTCTTAGCT  750

seq1  TTAAGAATATTCCATGTGATATTTGGGATATAC-TTACACTCAGAGAGTA  798
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  TTAAGAATATTCCATGTGATATTGGGGATATACTTTACACTCAGAGAGTA  800

seq1  TTCCTCATGTATTAGACTTTCATGTTTCCCTGGCATTGCTGTC-TTTCCT  847
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  TTCCTCATGTATTAGATTTTCATGTTTCCCTGGCATTGCTGTCTTTTCCT  850

seq1  CTGACACCATTCTAGCCTGAAGAGG-TCTAGAAGCTTTGAGGCGT--CCC  894
      ||||||||||||||||||| ||||| ||||||||||||||||| |  || 
seq2  CTGACACCATTCTAGCCTG-AGAGGTTCTAGAAGCTTTGAGGCCTTCCCT  899

seq1  TTCAAGGGAAGCCT-GGGGTTCCATCAAAAAGAGGGGAGACTCTTTGGGG  943
      ||||||| ||| || |||||| |||| ||||||||||||||||||| |||
seq2  TTCAAGGAAAGGCTGGGGGTTTCATC-AAAAGAGGGGAGACTCTTT-GGG  947

seq1  AGCTCTCTGAGGACTGGAGTGATACTGGAGTCACTGTGACTTCCACTGGC  993
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCTCTCTGAGGACTGGAGTGATACTGGAGTCACTGTGACTTCCCCTGGC  997

seq1  TTTGTCCGGGGA  1005
      ||||||| ||||
seq2  TTTGTCCCGGGA  1009