BAC Information

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BAC

Clone NameB6Ng01-114K22
Chromosome4 (Build37)4 (Build37)
Map Location 145,213,971 - 145,215,188146,958,065 - 146,958,664
singlet/doubletsingletsinglet
Overlap geneOTTMUSG00000010965
Upstream geneGm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701
Downstream geneLOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114K22.bB6Ng01-114K22.g
ACCDH920143DH920144
length1,1711,118
definitionDH920143|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K22, 5' end.DH920144|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,213,971 - 145,215,188)(146,958,065 - 146,958,664)
sequence
gaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaatgc
tttacccacaaatcccatcttaatagtcatcagagaattcatacaggaga
gaaaccttacaaatgtagtgaatgtgacaaatgctttacccgaaaattcc
atcttagtattcatcagagaattcatacaggagagaacccttacaaatgc
agtgaatgtgacaaatgctttacccaaaaatccaatcttaatattcatca
gagaattcatacaggagagaaaccttataaatgcagtgaatgtgacaaat
gctttactgaaaaaggcagtctgagaattcatcagagaattcatacagga
gagaatccttacaaatgcagtgaatgtgacaaatgctttacccgaaaatt
ccatcttagtattcatcagaaaatccatacaggagagaaaccttacaaat
agtttacatgtgacaaatacaatattcaccatgtcagtctgagaaatcat
cagttacttcatacagtagagaatctttataaatgaagtgaacgagataa
tcctttaccaaaatatatcatcttataattcattagtgaatacttagaga
agacaaacttcaaatatattataggtatgaatcctttccttttggcctat
ttcctagaatataacagtgaatatacttacaggctagaaacttaactcat
gcattgtatgaagaaatatctttgacttcatttgaggtcagagaaaacat
ctaagaactttttaagggatagtatttctgttgggaaaaatgtggcatat
gttttattcacggtgtattcttgacaacacttgaggctccactctagaga
attagtatgattatgaaaatcttgtgaaaattttcatgcaatgttcaaat
cttgggtaatgtcaactatttatgctggaggacctctgtacatgtgaaaa
tgtagaaagcctttcatgacacttttacttgttcacccctcaaatgttac
aaaaagagttttctggcaaactgagccacccagacagcatattcttttat
cctataagtatgcttacagatgttagtgtggcttcgaagtatccagaatc
atatttcttctcaatgctggtttccattaatggataacaactgagatatg
aaatctctctgtgagatctgg
gaattcatacgggagagaaactttacaaatgtagtgaatgtgacaaatgc
tttactcacaaatcccgtcttaattatcatcagagaattcatacaggaga
gaaacctcacaaatgtagtgaatgtgacaaatgctttacccacaaattta
atttgagagctcatcagataattcatacaggagagaaacctcacaaatgt
agtgaatgtgacaaatgctttacccacaaatttaatttgagagctcatca
gagaattcacaccggagagaaaccttacaaatgcagtgaatgtgacaaat
gctttacccgaaaattccatcttggtattcatcatagaattcatacagga
gagaaaccttacaaatgcagtgaatgtgacaaatgctttactggaaaagg
cagtctgagaattcatcagagaattcatataggagagaaaccttacaaat
gtagtgaatgtgacaaatgctttactggaaaaggcagtctgagaattcat
cagagaattcatacaggagagagacctcacaaatgtagtgaatgtgacaa
atgctttactggaaaaggcagtctgagaattcatcagagaatgcatacag
gagagaaaccttacaagtgtagtgaatgtgacaaatgctttacccaaaaa
tcccatcttaatattcatcagggaattcatacaggagagaaaccttacaa
atgcagtgaatgtgacaaatgctttacccacaaatcccatcttattaatc
atcagaaaattcatacaggagagaaaccttacaaatagtttacatgtgac
aaatacaatactcacaatgtcagtctgagaaatcatgaatttttttcata
cagtagagaatatttataaatgaagtgaacgagacaatcctttaccaaga
tatatcatcttaaatttcattagagaatagttagagaagacaaacttttc
aatatattgtaggtatgaatcctttttttttttttttttgggcctatttt
cctaggactgtaacagtgatactttacaggctagaaacctaacttcatgc
atttgtatggaagaaatatcttttgaccttcacttcaggatagagaagaa
caatctatgaacctttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145213971_145215188
seq2: B6Ng01-114K22.b_170_1215

seq1  GACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAGAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAGAATTCA  50

seq1  TACAGGAGAGAACCCTTACAAATGCAGTGAATGTGACAAATGCTTTACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGAGAACCCTTACAAATGCAGTGAATGTGACAAATGCTTTACCC  100

seq1  AAAAATCCAATCTTAATATTCATCAGAGAATTCATACAGGAGAGAAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCAATCTTAATATTCATCAGAGAATTCATACAGGAGAGAAACCT  150

seq1  TATAAATGCAGTGAATGTGACAAATGCTTTAATGAAAAAGGCAGCCTGAG  200
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TATAAATGCAGTGAATGTGACAAATGCTTTACTGAAAAAGGCAGTCTGAG  200

seq1  AATTCATCAGAGAATTCATACAGGAGAGAATCCTTACAAATGCAGTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCAGAGAATTCATACAGGAGAGAATCCTTACAAATGCAGTGAAT  250

seq1  GTGACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAAAATC  300

seq1  CATACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAATACAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAATACAATAT  350

seq1  TCATCATGTCAGTCTGAGAAATCATCAGTTACTTCATACAGTAGAGAATC  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGTCAGTCTGAGAAATCATCAGTTACTTCATACAGTAGAGAATC  400

seq1  TTTATAAATGAAGTGAACGAGACAATCCTTTACCAAAATATATCATCTTA  450
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTATAAATGAAGTGAACGAGATAATCCTTTACCAAAATATATCATCTTA  450

seq1  TAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTA  500
      ||||||||||| |||||||||||||||||||||  |||||||||||| ||
seq2  TAATTCATTAGTGAATACTTAGAGAAGACAAAC--TTCAAATATATTATA  498

seq1  GGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGAATATAACAGTGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGAATATAACAGTGAATA  548

seq1  TACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTT  598

seq1  GACTTCATTTCAGGTCAGAGAAAACATCTAAGAACTTTTTAAGGGATACT  650
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  GACTTCATTTGAGGTCAGAGAAAACATCTAAGAACTTTTTAAGGGATAGT  648

seq1  ATTTCTGTTGGGAAAAATGTGGCATATGTTTTATTCACGGTGTATTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTGGGAAAAATGTGGCATATGTTTTATTCACGGTGTATTCTTG  698

seq1  ACAACACTTGAGGCTCCACTCTAGAGAATTAGTATGATTATGAAAATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTTGAGGCTCCACTCTAGAGAATTAGTATGATTATGAAAATCTT  748

seq1  GTGAAAATTTTCATGCAATGTTCAAATCTTGAGTAATGTCAACTATTTAT  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGAAAATTTTCATGCAATGTTCAAATCTTGGGTAATGTCAACTATTTAT  798

seq1  GCTGGAGGACCTCTGTACATGTGAAAATGTAGAAAGCCTTTCATGACACC  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCTGGAGGACCTCTGTACATGTGAAAATGTAGAAAGCCTTTCATGACA-C  847

seq1  TTTTACTTGTTCA-CCCTCAAATGTTACAACATGAAGAAAAGTGGGGAAG  899
      ||||||||||||| |||||||||||||||                     
seq2  TTTTACTTGTTCACCCCTCAAATGTTACA---------------------  876

seq1  TCAGAAGATAGTATTGCATAACACACTGAGAAAGAAATAATCCATTTCAA  949
                                                        
seq2  --------------------------------------------------  876

seq1  AGAAAACTTATTAAGGTCTTTAATACAATCCTCACAATATCTAATAAAAC  999
                                                        
seq2  --------------------------------------------------  876

seq1  TGGTAACATTCTGTATATTTAATTCACATGAACTAATTCAGAAAAATTAT  1049
                                                        
seq2  --------------------------------------------------  876

seq1  ACTTAAAAGAG-TATCTGGCAAACTGAGCCACCCAGACAGCATATTC-TT  1097
          ||||||| | ||||||||||||||||||||||||||||||||| ||
seq2  ----AAAAGAGTTTTCTGGCAAACTGAGCCACCCAGACAGCATATTCTTT  922

seq1  TATCCTATAAGTATGCTTACAGATGTTAAGTGT-GCTTCG-AGTATCCAG  1145
      ||||||||||||||||||||||||||| ||||| |||||| |||||||||
seq2  TATCCTATAAGTATGCTTACAGATGTT-AGTGTGGCTTCGAAGTATCCAG  971

seq1  AAATCATAATTCTTCTCAATTGCTTGTTTCACATTATAGGATAACAACTG  1195
       ||||||| |||||||||| |||| ||||| |||||  ||||||||||||
seq2  -AATCATATTTCTTCTCAA-TGCTGGTTTC-CATTAATGGATAACAACTG  1018

seq1  AG-TATGA---GTCTCT-TGTGATCTGG  1218
      || |||||    ||||| || |||||||
seq2  AGATATGAAATCTCTCTGTGAGATCTGG  1046

seq1: chr4_146958065_146958664
seq2: B6Ng01-114K22.g_575_1185

seq1  TTCATACAGGAGAGAGACCTCACAAATGTAGTGAATGTGACAAATGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAGGAGAGAGACCTCACAAATGTAGTGAATGTGACAAATGCTTT  50

seq1  ACTGGAAAAGGCAGTCTGAGAATTCATCAGAGAATGCATACAGGAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAAAGGCAGTCTGAGAATTCATCAGAGAATGCATACAGGAGAGAA  100

seq1  ACCTTACAAGTGTAGTGAATGTGACAAATGCTTTACCCAAAAATCCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACAAGTGTAGTGAATGTGACAAATGCTTTACCCAAAAATCCCATC  150

seq1  TTAATATTCATCAGGGAATTCATACAGGAGAGAAACCTTACAAATGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTCATCAGGGAATTCATACAGGAGAGAAACCTTACAAATGCAGT  200

seq1  GAATGTGACAAATGCTTTACCCACAAATCCCATCTTATTAATCATCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGACAAATGCTTTACCCACAAATCCCATCTTATTAATCATCAGAA  250

seq1  AATTCATACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAATACA  300

seq1  ATACTCACAATGTCAGTCTGAGAAATCATGAA-TTTTTTCATACAGTAGA  349
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATACTCACAATGTCAGTCTGAGAAATCATGAATTTTTTTCATACAGTAGA  350

seq1  GAATATTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCA  400

seq1  TCTTAAAATTCATTAGAGAATAGTTAGAGAAGACAAACTTTTCAAATATA  449
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTTAAATTTCATTAGAGAATAGTTAGAGAAGACAAACTTTTC-AATATA  449

seq1  TTGTAGGTATGAATCCTTTTTTTTTTTTTTTT--GGCCTA-TTTCCTA-G  495
      ||||||||||||||||||||||||||||||||  |||||| ||||||| |
seq2  TTGTAGGTATGAATCCTTTTTTTTTTTTTTTTTGGGCCTATTTTCCTAGG  499

seq1  ACTGTAACAGTGAATAC-TTACAGGCTAGAAACTTAAC-TCATGCA-TTG  542
      |||||||||||| |||| ||||||||||||||| |||| ||||||| |||
seq2  ACTGTAACAGTG-ATACTTTACAGGCTAGAAACCTAACTTCATGCATTTG  548

seq1  TAT-GAAGAAATATC-TTTGA-CTTCACTTCAGGATAGAG-AGAAC-ATC  587
      ||| ||||||||||| ||||| |||||||||||||||||| ||||| |||
seq2  TATGGAAGAAATATCTTTTGACCTTCACTTCAGGATAGAGAAGAACAATC  598

seq1  TAAGAACTTTTTA  600
      || |||| |||||
seq2  TATGAACCTTTTA  611