BAC Information

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BAC

Clone NameB6Ng01-114M17
Chromosome4 (Build37)
Map Location 135,283,949 - 135,431,123
singlet/doubletdoublet
Overlap geneIl22ra1, LOC665334, Myom3, Fusip1, Pnrc2
Upstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra
Downstream geneCnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114M17.bB6Ng01-114M17.g
ACCDH920224DH920225
length1,1311,030
definitionDH920224|Mus musculus domesticus DNA, BAC clone: B6Ng01-114M17, 5' end.DH920225|Mus musculus domesticus DNA, BAC clone: B6Ng01-114M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,283,949 - 135,285,094)(135,430,091 - 135,431,123)
sequence
gaattcctcagcacccgactaggcacctttgtacccctgcccccacgagc
ccaggtcttactctgctctcctctccccgccctgggctgggcggggccag
ctgccaaagcggcaagacttcacacacaccccagcctctgtgcaggggtc
cagagccgaggcccgaaggggccctggagggacccaatgaagacactact
gaccatcctgacggtgggatccctggccggtaagtacctctcgacctgtc
ctcagatcctcctaccccagcagctagggagcacagttgcctattcctgc
cccatgagtctcttagcagccagtttcattttcttcccggctggcactgg
actgggtggcaagttttcctggagatggagatgacctggtccaggtagct
ggagagaagagagtaccccagacctggcttcctaaagggtctcagttgac
cttcaagtatgcagacattgattgaccagctgtctgaactcagggtgctg
agtaggtagagtcttggcctcaggggtgccgcttcatgctctgtttatca
ttcaagaggggacaacaggctagataaagctggtgtcaggctactgtctc
catccatgtctcctcacgcccctctggctggatcagtaaaaaacaggtct
ctccagcagccgccagaaggctgcaataagtcactagagtgtccgtgcaa
atgcgactaaggactatggctgtcaggtctcatcaaataaactttggggt
tcatacctgtgagacatgagacaggggcttgatctgttctcctgaatgga
atccagggcttctctctcaagaggcagggctgagcatgttggaaggaaat
ggtccagccatctcatggaccttcttgcttagtagtgcataatacggtcc
taaagacacacacttgcagccaggtggtctttaatcccagcgctcagagg
cagaggcagtagatgtcagcctggtcttacagaggagtagccagacagga
tagagaaaccctatcttgaaacagagagacagagacgagagagatcgcaa
ggagcctgctctgctctattgcccaacagtgtgatatgcatcttagcatc
ggcaaagcttctttcaagccctgcagactgc
gaattcttttttacacatggtccagagtttggagctcttgtggactggta
gctattaatgagctagagacagtgctaagacatggtgaatgccggaacca
tgctctcccaaagggcagcctgacgctgaccttgtaggagagagcaggct
cagccaggtggcaggacacaggcaggcttcatggcacccaagctttccga
caatgtgggtaatggtgtcctctatgtcaagcaccttttaggcacagaga
agaagggcacatgagcccaggctcttgaaactcactgtagcattatgctt
tgaagtgtggcaccactgagatgtcctgaatccaagaacactggaaatca
gaatagcaccttgcccttaaaattgctgagactggaatgagatgacataa
gcaaaagtctagcatgaggtagggagcagataaaacaccctagatgcatt
tggacaggcttgcagaattctggaccaacttaattctggacagcaatggc
tatatagatagatgtgtgagtgtgtgtgtcttatttgcatcacaatttgg
agccaatgaaacgtttttgttttgctgagatgggggttttgctatgtact
ccaaactgacctcaaaactgagaagctgtgattacaggcctgaatgaggc
aagacacctggcacatttacccccagaattattcactgaaattggtgttc
acccttgaaatgttgactctaggatacacgtttttctttttctcttaaac
aaaagatatctctcctttctttcccgaaccttgctgtcattcttgagcgg
tatatttcttttctctagttttcccactttcgaaacaagaccaaaaaatg
tgtagggatccagcaagtgctgtgtatagaaaaagcaggccctgatagta
gtgacagtcttcaggtaccgagaaaaagtgaagctagatcagaggagaca
taaaaaaggagtggtcatgtgcagaatagtgccggctctgggtgggtgga
atatgaacccacggcagcctctggggctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_135283949_135285094
seq2: B6Ng01-114M17.b_48_1178

seq1  GAATTCCTCAGCACCCGACTAGGCACCTTTGTACCCCTGCCCCCACGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGCACCCGACTAGGCACCTTTGTACCCCTGCCCCCACGAGC  50

seq1  CCAGGTCTTACTCTGCTCTCCTCTCCCCGCCCTGGGCTGGGCGGGGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCTTACTCTGCTCTCCTCTCCCCGCCCTGGGCTGGGCGGGGCCAG  100

seq1  CTGCCAAAGCGGCAAGACTTCACACACACCCCAGCCTCTGTGCAGGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAAGCGGCAAGACTTCACACACACCCCAGCCTCTGTGCAGGGGTC  150

seq1  CAGAGCCGAGGCCCGAAGGGGCCCTGGAGGGACCCAATGAAGACACTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCGAGGCCCGAAGGGGCCCTGGAGGGACCCAATGAAGACACTACT  200

seq1  GACCATCCTGACGGTGGGATCCCTGGCCGGTAAGTACCTCTCGACCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCCTGACGGTGGGATCCCTGGCCGGTAAGTACCTCTCGACCTGTC  250

seq1  CTCAGATCCTCCTACCCCAGCAGCTAGGGAGCACAGTTGCCTATTCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATCCTCCTACCCCAGCAGCTAGGGAGCACAGTTGCCTATTCCTGC  300

seq1  CCCATGAGTCTCTTAGCAGCCAGTTTCATTTTCTTCCCGGCTGGCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGAGTCTCTTAGCAGCCAGTTTCATTTTCTTCCCGGCTGGCACTGG  350

seq1  ACTGGGTGGCAAGTTTTCCTGGAGATGGAGATGACCTGGTCCAGGTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTGGCAAGTTTTCCTGGAGATGGAGATGACCTGGTCCAGGTAGCT  400

seq1  GGAGAGAAGAGAGTACCCCAGACCTGGCTTCCTAAAGGGTCTCAGTTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGAGAGTACCCCAGACCTGGCTTCCTAAAGGGTCTCAGTTGAC  450

seq1  CTTCAAGTATGCAGACATTGATTGACCAGCTGTCTGAACTCAGGGTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTATGCAGACATTGATTGACCAGCTGTCTGAACTCAGGGTGCTG  500

seq1  AGTAGGTAGAGTCTTGGCCTCAGGGGTGCCGCTTCATGCTCTGTTTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTAGAGTCTTGGCCTCAGGGGTGCCGCTTCATGCTCTGTTTATCA  550

seq1  TTCAAGAGGGGACAACAGGCTAGATAAAGCTGGTGTCAGGCTACTGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAGGGGACAACAGGCTAGATAAAGCTGGTGTCAGGCTACTGTCTC  600

seq1  CATCCATGTCTCCTCACGCCCCTCTGGCTGGATCAGTAAAAAACAGGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGTCTCCTCACGCCCCTCTGGCTGGATCAGTAAAAAACAGGTCT  650

seq1  CTCCAGCAGCCGCCAGAAGGCTGCAATAAGTCACTAGAGTGTCCGTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCAGCCGCCAGAAGGCTGCAATAAGTCACTAGAGTGTCCGTGCAA  700

seq1  ATGCGACTAAGGACTATGGCTGTCAGGTCTCATCAAATAAACTTTGGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGACTAAGGACTATGGCTGTCAGGTCTCATCAAATAAACTTTGGGGT  750

seq1  TCATACCTGTGAGACATGAGACAGGGGCTTGATCTGTTCTCCTGAATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCTGTGAGACATGAGACAGGGGCTTGATCTGTTCTCCTGAATGGA  800

seq1  ATCCAGGGCTTCTCTCTCAGGAGGCAGGGCTGAGGCATGTTGGAAGGAAA  850
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  ATCCAGGGCTTCTCTCTCAAGAGGCAGGGCTGA-GCATGTTGGAAGGAAA  849

seq1  TGGTCCAGCCATCTCATGGACCTTCTTGCTTAGTAGTGCATAATACGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGTCCAGCCATCTCATGGACCTTCTTGCTTAGTAGTGCATAATACGGT-  898

seq1  CCTAAAGACACACACTTGCAGCCAGGTGGTCTTTAATCCCAGCGCTCAGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCTAAAGACACACACTTGCAGCCAGGTGGTCTTTAATCCCAGCGCTCA-G  947

seq1  AGGCAGAGGCAGGTAGATGTCAGCCTGGTC-TACAGAGGGAGTAGCCAGG  999
      ||||||||||| |||||||||||||||||| |||||| |||||||||| |
seq2  AGGCAGAGGCA-GTAGATGTCAGCCTGGTCTTACAGA-GGAGTAGCCA-G  994

seq1  ACAGGGATAGAGAAACCCTATCTTGAAAAACAAGAGAGACAGAGACAGAG  1049
      ||| ||||||||||||||||||||||||    |||||||||||||| |||
seq2  ACA-GGATAGAGAAACCCTATCTTGAAA---CAGAGAGACAGAGAC-GAG  1039

seq1  AGAGATCGCAA-GAGCACTGCTCTGGCTCCTATTGCCCAAACAGTGTG-T  1097
      ||||||||||| |||| ||||||| ||| ||||||||| ||||||||| |
seq2  AGAGATCGCAAGGAGC-CTGCTCT-GCT-CTATTGCCC-AACAGTGTGAT  1085

seq1  ATGCATCCTTAGCATCGGCAAAGCTTCTTTCCAGCCCTTGGCAGACTGC  1146
      |||||| |||||||||||||||||||||||| ||||||  |||||||||
seq2  ATGCAT-CTTAGCATCGGCAAAGCTTCTTTCAAGCCCT--GCAGACTGC  1131

seq1: chr4_135430091_135431123
seq2: B6Ng01-114M17.g_68_1097 (reverse)

seq1  CCAGCCCCAGA-GCTGCCGTGGG-TCATATTCACCCCACCCAGAGCCCGG  48
      ||||||||||| ||||||||||| ||||||||  ||||||||||| ||||
seq2  CCAGCCCCAGAGGCTGCCGTGGGTTCATATTCCACCCACCCAGAG-CCGG  49

seq1  CAACTATTTCTGCACATGACCACCTTCCTTTTTTATGTCTCCTCTGATCT  98
      | |||| ||||||||||||||||  |||||||||||||||||||||||||
seq2  C-ACTA-TTCTGCACATGACCAC--TCCTTTTTTATGTCTCCTCTGATCT  95

seq1  AGCTTCACTTTTTTCTCGGTACCTG-AGACTGTCACTACTATCAGGGCCT  147
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  AGCTTCAC-TTTTTCTCGGTACCTGAAGACTGTCACTACTATCAGGGCCT  144

seq1  GCTTTTTCTATACACAGCACTTGCTGGATCCCTACACATTTTTTGGTCTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCTATACACAGCACTTGCTGGATCCCTACACATTTTTTGGTCTT  194

seq1  GTTTCGAAAGTGGGAAAACTAGAGAAAAGAAATATACCGCTCAAGAATGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCGAAAGTGGGAAAACTAGAGAAAAGAAATATACCGCTCAAGAATGA  244

seq1  CAGCAAGGTTCGGGAAAGAAAGGAGAGATATCTTTTGTTTAAGAGAAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGTTCGGGAAAGAAAGGAGAGATATCTTTTGTTTAAGAGAAAAA  294

seq1  GAAAAACGTGTATCCTAGAGTCAACATTTCAAGGGTGAACACCAATTTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACGTGTATCCTAGAGTCAACATTTCAAGGGTGAACACCAATTTCA  344

seq1  GTGAATAATTCTGGGGGTAAATGTGCCAGGTGTCTTGCCTCATTCAGGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAATTCTGGGGGTAAATGTGCCAGGTGTCTTGCCTCATTCAGGCC  394

seq1  TGTAATCACAGCTTCTCAGTTTTGAGGTCAGTTTGGAGTACATAGCAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCACAGCTTCTCAGTTTTGAGGTCAGTTTGGAGTACATAGCAAAA  444

seq1  CCCCCATCTCAGCAAAACAAAAACGTTTCATTGGCTCCAAATTGTGATGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCTCAGCAAAACAAAAACGTTTCATTGGCTCCAAATTGTGATGC  494

seq1  AAATAAGACACACACACTCACACATCTATCTATATAGCCATTGCTGTCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGACACACACACTCACACATCTATCTATATAGCCATTGCTGTCCA  544

seq1  GAATTAAGTTGGTCCAGAATTCTGCAAGCCTGTCCAAATGCATCTAGGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAGTTGGTCCAGAATTCTGCAAGCCTGTCCAAATGCATCTAGGGT  594

seq1  GTTTTATCTGCTCCCTACCTCATGCTAGACTTTTGCTTATGTCATCTCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCTGCTCCCTACCTCATGCTAGACTTTTGCTTATGTCATCTCAT  644

seq1  TCCAGTCTCAGCAATTTTAAGGGCAAGGTGCTATTCTGATTTCCAGTGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTCAGCAATTTTAAGGGCAAGGTGCTATTCTGATTTCCAGTGTT  694

seq1  CTTGGATTCAGGACATCTCAGTGGTGCCACACTTCAAAGCATAATGCTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTCAGGACATCTCAGTGGTGCCACACTTCAAAGCATAATGCTAC  744

seq1  AGTGAGTTTCAAGAGCCTGGGCTCATGTGCCCTTCTTCTCTGTGCCTAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTTCAAGAGCCTGGGCTCATGTGCCCTTCTTCTCTGTGCCTAAA  794

seq1  AGGTGCTTGACATAGAGGACACCATTACCCACATTGTCGGAAAGCTTGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTGACATAGAGGACACCATTACCCACATTGTCGGAAAGCTTGGG  844

seq1  TGCCATGAAGCCTGCCTGTGTCCTGCCACCTGGCTGAGCCTGCTCTCTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGAAGCCTGCCTGTGTCCTGCCACCTGGCTGAGCCTGCTCTCTCC  894

seq1  TACAAGGTCAGCGTCAGGCTGCCCTTTGGGAGAGCATGGTTCCGGCATTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGTCAGCGTCAGGCTGCCCTTTGGGAGAGCATGGTTCCGGCATTC  944

seq1  ACCATGTCTTAGCACTGTCTCTAGCTCATTAATAGCTACCAGTCCACAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCTTAGCACTGTCTCTAGCTCATTAATAGCTACCAGTCCACAAG  994

seq1  AGCTCCAAACTCTGGACCATGTGTAAAAAAGAATTC  1033
      ||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAAACTCTGGACCATGTGTAAAAAAGAATTC  1030