BAC Information

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BAC

Clone NameB6Ng01-115C07
Chromosome4 (Build37)
Map Location 36,945,586 - 36,946,765
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042132
Downstream geneLOC545600, LOC621458, LOC277771
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115C07.bB6Ng01-115C07.g
ACCDH920484DH920485
length1,1671,242
definitionDH920484|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C07, 5' end.DH920485|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatcgaatggtgttccctgccaggtctgagttataaaactcaca
taatgaagacaacctcaatcaagtcagtgttgtaggaatgagcttgggtc
tcagtggcagagggaggatctctgatgccttgaatcaagtgtcaagtgtc
caggtaaagcattctatgtcttcttcagagttcatcatttgctatctaac
ttacaatgtttgtgaacacaaagctctcttaaagctgttcttacagaata
cgaatgaggggactatattgtcatgtcatctactgcctattttaaagctc
cctgtgacatgtttaaaaagtcacggagaattgatatgtcaaattgtttt
atcttcaaatgattttcttcattttaccttctatttactagatcattctc
tgattttatgaagaaacttgcttgacattgttttgtttgtttgtttgttt
gtttgttttgtttttattcttgttcttgttttgctttttctgttttgttc
ctcaatactttctggattaggagaatgcttacatttaaaacatcatattt
tattattaaagtatttcacactcatgctttaatgttttaatgttctcaag
attgtatttggatgtcctcctaaggtaactatatagagattattttatgt
attttataattctaagaattaaagtgggagactacagaggaaaacagagt
aatagtgtgatataacctttttacaaatagttacttctcattgtctatcc
cctctgaaaaacatagatttttttttcttttagacttcaaatgcctaaga
ctttctttatttcttttttttcttttattgctgttttaatacctgttata
gattgtttcttgttatcatcattttatttgggatgtgttttcatgtgtct
tacctggaacttgagcttgctgtatagtagaggatgcacttaaacttcat
gaggcttctgcattcataatctccatcctggattactgtatgggttaccc
tcccagtgcacgagtgcactggacttcactacttcatttccgtggatagt
aagttattgttcatacttttaagcttttggaggcttcttgtcactgattg
tttcttgtagcttacttttttctttgctctaaaacatttagctgctcata
gctgccatgggggcttt
gaattcaatacattgcagtgataaaatagtggcatgaatgttctggaggt
aaccaattactttatgattgtgtgtaaggcattctctgtagaaagaaaca
cattcctggtattttatatcaaggaaagtatccaaagcttagtagctaac
attctagaagaattaacttcctactattattctgctaaatagcgtaatat
catgttgcctccaaggctctttacacaattaatgtgtatgctacaaccct
catacctcataagagaagtttccttggcaatacatgaatactaatataga
aattcttaactggtcaaagaatagataataagtgtattagagtaatcaga
caacctgaaaattatataataccatttatattttatattaggggttaggg
accatttcaaaagacaaggttaaaaaatcataatagccagaactcaggaa
aatttaattgaagggtaacaatgtcttctggacatagcaaaaccaatgca
tttatgagatcacagaagtcatggttacaaaacatatatatgactctgcc
aatcatgactgtaggatagaggaagaaagaatttgtaagcacccacttat
aattgggggaatgcagatagttgattctttttgaagattgtcaatatgtg
gccttggtaaattgataaaaattgaatgcatgggtctatgccactaattt
aaaagtcagcaaaaaccagacatggtaggtctaatttgaaaaaagaaatt
aatgaaagaggaaatgaaataaagaaagaaggaattgtgaggtagggggc
caatgtgagatatgttacgggaggattgggagcaaatgtgatcaagatgc
acttcatgaatttcacaaacctaagaatagtatagtacagtgacatgtat
agatattgttttttcaatcattattgtacagttctgtatttattatcccc
aaatcatttcctagactcatctgtgtaatatctttaccacagctctgggc
aacactggtttatttaccatcttatagtttaatcatcatgaaaaagtgta
ataaataagttatgcaaatgtgtttgtttgtacattatatgagattgctt
tcaattgagagaggggcaaagaagggttgcaggattagaatgcaggaaaa
gccttaggtgtcctcttaaactattgaattttaccaaggaacctaggagt
tgaggttcacgatttttataagattctctgtgaagagataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36945586_36946765
seq2: B6Ng01-115C07.b_48_1214

seq1  GAATTCCATCGAATGGTGTTCCCTGCCAGGTCTGAGTTATAAAACTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCGAATGGTGTTCCCTGCCAGGTCTGAGTTATAAAACTCACA  50

seq1  TAATGAAGACAACCTCAATCAAGTCAGTGTTGTAGGAATGAGCTTGGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGACAACCTCAATCAAGTCAGTGTTGTAGGAATGAGCTTGGGTC  100

seq1  TCAGTGGCAGAGGGAGGATCTCTGATGCCTTGAATCAAGTGTCAAGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCAGAGGGAGGATCTCTGATGCCTTGAATCAAGTGTCAAGTGTC  150

seq1  CAGGTAAAGCATTCTATGTCTTCTTCAGAGTTCATCATTTGCTATCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAGCATTCTATGTCTTCTTCAGAGTTCATCATTTGCTATCTAAC  200

seq1  TTACAATGTTTGTGAACACAAAGCTCTCTTAAAGCTGTTCTTACAGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGTTTGTGAACACAAAGCTCTCTTAAAGCTGTTCTTACAGAATA  250

seq1  CGAATGAGGGGACTATATTGTCATGTCATCTACTGCCTATTTTAAAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGAGGGGACTATATTGTCATGTCATCTACTGCCTATTTTAAAGCTC  300

seq1  CCTGTGACATGTTTAAAAAGTCACGGAGAATTGATATGTCAAATTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGACATGTTTAAAAAGTCACGGAGAATTGATATGTCAAATTGTTTT  350

seq1  ATCTTCAAATGATTTTCTTCATTTTACCTTCTATTTACTAGATCATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAAATGATTTTCTTCATTTTACCTTCTATTTACTAGATCATTCTC  400

seq1  TGATTTTATGAAGAAACTTGCTTGACATTGTTTTGTTTGTTTGTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATGAAGAAACTTGCTTGACATTGTTTTGTTTGTTTGTTTGTTT  450

seq1  GTTTGTTTTGTTTTTATTCTTGTTCTTGTTTTGCTTTTTCTGTTTTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTGTTTTTATTCTTGTTCTTGTTTTGCTTTTTCTGTTTTGTTC  500

seq1  CTCAATACTTTCTGGATTAGGAGAATGCTTACATTTAAAACATCATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATACTTTCTGGATTAGGAGAATGCTTACATTTAAAACATCATATTT  550

seq1  TATTATTAAAGTATTTCACACTCATGCTTTAATGTTTTAATGTTCTCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTAAAGTATTTCACACTCATGCTTTAATGTTTTAATGTTCTCAAG  600

seq1  ATTGTATTTGGATGTCCTCCTAAGGTAACTATATAGAGATTATTTTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTTGGATGTCCTCCTAAGGTAACTATATAGAGATTATTTTATGT  650

seq1  ATTTTATAATTCTAAGAATTAAAGTGGGAGACTACAGAGGAAAACAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAATTCTAAGAATTAAAGTGGGAGACTACAGAGGAAAACAGAGT  700

seq1  AATAGTGTGATATAACCTTTTTACAAATAGTTACTTCTCATTGTCTATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTGATATAACCTTTTTACAAATAGTTACTTCTCATTGTCTATCC  750

seq1  CCTCTGAAAAACATAGATTTTTTTTTCTTTTAGACTTCAAATGCCTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAAAACATAGATTTTTTTTTCTTTTAGACTTCAAATGCCTAAGA  800

seq1  CTTTCTTTATTTCTTTTTTTTCTTTTATTGCTGTTTTAATACCTGTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTATTTCTTTTTTTTCTTTTATTGCTGTTTTAATACCTGTTATA  850

seq1  GATTGTTTCTTGTTATCATCATTTTATTTGGGATGTGTTTTCATGTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTCTTGTTATCATCATTTTATTTGGGATGTGTTTTCATGTGTCT  900

seq1  TACCTGGAACTTGAGCTTGCTGTATAGTAGAGGATGCACTTAAACTTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGAACTTGAGCTTGCTGTATAGTAGAGGATGCACTTAAACTTCAT  950

seq1  GAGGCTTCTGCATTCATAATCTCCATCCTGGGATTACTGTTATGGGTTAC  1000
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  GAGGCTTCTGCATTCATAATCTCCATCCT-GGATTACTG-TATGGGTTAC  998

seq1  CCTCCCAGTGCACGGAGTGCCACCTGGACTTCACTACTTCATTTCCGTGG  1050
      ||||||||||||| ||||||   |||||||||||||||||||||||||||
seq2  CCTCCCAGTGCAC-GAGTGC--ACTGGACTTCACTACTTCATTTCCGTGG  1045

seq1  ATAGTAAGTTATTGTTCATACTTTTAAGCCTTTTGGAGGCTTCCTGTCAC  1100
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  ATAGTAAGTTATTGTTCATACTTTTAAG-CTTTTGGAGGCTTCTTGTCAC  1094

seq1  TGAATTTGTTTTCTTGTAGGCTTACTTTTTTCTTTGCTCTAAAACATCTA  1150
      |||  ||| ||||||||| |||||||||||||||||||||||||||| ||
seq2  TGA--TTG-TTTCTTGTA-GCTTACTTTTTTCTTTGCTCTAAAACATTTA  1140

seq1  GCTGCTCATAAGCCTTGCCATGGTGGCTTT  1180
      ||||||||| |||  |||||||| ||||||
seq2  GCTGCTCAT-AGC--TGCCATGGGGGCTTT  1167