BAC Information

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BAC

Clone NameB6Ng01-115I09
Chromosome4 (Build37)
Map Location 88,445,339 - 88,599,806
singlet/doubletdoublet
Overlap geneOTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273
Downstream geneLOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115I09.bB6Ng01-115I09.g
ACCDH920765DH920766
length1,1281,219
definitionDH920765|Mus musculus domesticus DNA, BAC clone: B6Ng01-115I09, 5' end.DH920766|Mus musculus domesticus DNA, BAC clone: B6Ng01-115I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,598,659 - 88,599,806)(88,445,339 - 88,446,564)
sequence
gaattcattaaaagttaaaatttaagtgaaaattgtaataaatgtcaagg
taacattttaatggtggctgagaagtttccacaccccagaaaggaataaa
ttatataaatcttattagattccttttagagctctgtttcatcacacaca
cacacacacacacacacacacacacacacacacacacacacacaaatatt
gaggcaagtctcagatttagtttttgcaagccctaactcatatccacaat
tactttttaaaggttttagttttattagggaaatgggactcttcttgact
tgtttataactgcacgtggaaggatttatttaggttttatctgttgttct
tttttgttgttgtctttttgttcgtttgctgtctatttttcagagtgaag
cttaggaatctaatttctttctttctttttcttccttttaagtttattta
catcaaactgaaaaagaaactaaatcaggagaggatatttctgcactttt
actgcagtcatagacaaatggtgtctgtgtgggtgagactgttctaaatg
ctttgttgtacttttttaagtgttgtaaacagaattaaaatttataaata
cattgaaataaataccatacgttctatggtaacctaagagtttaaaattt
tacatttgaaaggattatatgcatttattaaaaaaatcaataaaaccacc
aagcatgtcaaagagaaaagaaccggatgtttacacaaaaggaatagaag
tgttttaataaactgtttttcttaaaatttcaacatttataatacttaaa
atgaaagttaagacaataatatacttatacagcctcaaagcagtgggaaa
tttttatttatatttaaaacacacacacacacacacacacacatacacac
acacacacacacacacacaccacacacacaaacaccaccaccaccacccc
accacacaggcatatctttttgccaggtagtttggtagggaattcaaatg
tataaaataagctttgagtatatgttgagtcacaggagggactactctaa
atgcagcaatattaagcatgagggtgcctcggctatttttcccttctcct
tctgtgaagtgagacaggctctcatgga
gaattcagaatgggagagaaaactcgtgctgacttacagagggagggttg
atgtcagaaggagcagagacaggcacacttgacagaagccctccctgtgg
gaggctgagcaagagcccatctacccgaaaatgcccttttggtgagggtg
acttttgagagatggaaacagggaggaggggcctggccaggaggaggagc
gccaacttcctggctgagaggtccaactgctccctgctcagcagagctcc
tgagaggagaggggcaagaccatactgtctgtcctctctctggaactgtc
tgcctgttggggcccagctctcctctctgccaactccacttccttcttct
ccactcgcgttagagagctggaagggtctggcgggccacccaaacgcacc
aagatgcgaaccaaacaaacgaaaggaaaccgaaccaaaggagaccaaac
caaacccagcccagccaaaccaaaacgctgctctctgggctttggagcct
tcccggttccccgaaaacatgtcccctggcccaccaattccgtctgggtt
caattctcaaggcgcgatggatggcgtacagtcctgtacgcgaaggggcc
cgggagagaggcaggagacactccctgcctgcccggagtcgcgcgctgaa
cggggcgaacggcctccgcaggcgcccgctgctgccctccggtggcccgc
gccctctgctgctgctcctggcctcagaagtcgcgtccagcgtccagcgc
agcgcaggcagtcagcgagcaagagcccgaagctccgagtgaactattaa
agcagcaaactccaggctcaatgggaaggcggccttgccctcgcgctccc
cctgcaggccagccccgcaatcgtcaggcttcagcatgctgcctgtgcat
ctattcctggtgggagggggtgatgctgagctgcagcccagcccagctca
cttgattctggtaaatctgggagcctgcacctggtagcgaagcggaatcc
gcgccccttcttagcagagctccgaagcgtgcgggtcacagttgctgcgg
gacaggaccgatttccatgtccctggaagaaaggaactacatctcacccg
attgaactctgggagaaaaccacagttgctctccagactcaggcaggtct
ctacctctttgagacaaggcatgaactgctggtcagaaggggtctgacca
tcactctatctagcctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88598659_88599806
seq2: B6Ng01-115I09.b_45_1172 (reverse)

seq1  TCCATGAGACCCTGTCTCAAACATCAACAAGAAAGGAAGAAGGGAAAAAA  50
      ||||||||| ||||||||  || |||   ||||  | |||||||||||| 
seq2  TCCATGAGAGCCTGTCTC--ACTTCA--CAGAA--GGAGAAGGGAAAAA-  43

seq1  TGAGCAGAGGCAACCCTCATGCTTAAATATTTGCCTGCATTTAAGAGTAG  100
        ||| ||||| |||||||||||| ||||||   |||||||| |||||||
seq2  -TAGCCGAGGC-ACCCTCATGCTT-AATATT--GCTGCATTT-AGAGTAG  87

seq1  TCCCTCATGTGACCTCAAACATATACTCAAAGCTTATTTTATACATTTTG  150
      |||||| ||||| ||| |||||||||||||||||||||||||||| ||||
seq2  TCCCTCCTGTGA-CTC-AACATATACTCAAAGCTTATTTTATACA-TTTG  134

seq1  AATTTCCCTTACCAAACTACCTGGCAAAAAGATATGCCTGTGGTGGTGGT  200
      ||||  || |||||||||||||||||||||||||||||||| ||||||| 
seq2  AATT--CCCTACCAAACTACCTGGCAAAAAGATATGCCTGT-GTGGTGG-  180

seq1  GGTGGTGGTGGTGGTGTTTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGTGGTGGTGTTTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGT  230

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTAAATATAAATAAAAATT  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGTGTGTGTGTGTGTGTGTGTGTTTTAAATATAAATAAAAATT  280

seq1  TCCCACTGCTTTGAGGCTGTATAAGTATATTATTGTCTTAACTTTCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGCTTTGAGGCTGTATAAGTATATTATTGTCTTAACTTTCATTT  330

seq1  TAAGTATTATAAATGTTGAAATTTTAAGAAAAACAGTTTATTAAAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTATAAATGTTGAAATTTTAAGAAAAACAGTTTATTAAAACACT  380

seq1  TCTATTCCTTTTGTGTAAACATCCGGTTCTTTTCTCTTTGACATGCTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCTTTTGTGTAAACATCCGGTTCTTTTCTCTTTGACATGCTTGG  430

seq1  TGGTTTTATTGATTTTTTTAATAAATGCATATAATCCTTTCAAATGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTATTGATTTTTTTAATAAATGCATATAATCCTTTCAAATGTAAA  480

seq1  ATTTTAAACTCTTAGGTTACCATAGAACGTATGGTATTTATTTCAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAACTCTTAGGTTACCATAGAACGTATGGTATTTATTTCAATGTA  530

seq1  TTTATAAATTTTAATTCTGTTTACAACACTTAAAAAAGTACAACAAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATTTTAATTCTGTTTACAACACTTAAAAAAGTACAACAAAGCA  580

seq1  TTTAGAACAGTCTCACCCACACAGACACCATTTGTCTATGACTGCAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACAGTCTCACCCACACAGACACCATTTGTCTATGACTGCAGTAA  630

seq1  AAGTGCAGAAATATCCTCTCCTGATTTAGTTTCTTTTTCAGTTTGATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAGAAATATCCTCTCCTGATTTAGTTTCTTTTTCAGTTTGATGTA  680

seq1  AATAAACTTAAAAGGAAGAAAAAGAAAGAAAGAAATTAGATTCCTAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTTAAAAGGAAGAAAAAGAAAGAAAGAAATTAGATTCCTAAGCT  730

seq1  TCACTCTGAAAAATAGACAGCAAACGAACAAAAAGACAACAACAAAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGAAAAATAGACAGCAAACGAACAAAAAGACAACAACAAAAAAG  780

seq1  AACAACAGATAAAACCTAAATAAATCCTTCCACGTGCAGTTATAAACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGATAAAACCTAAATAAATCCTTCCACGTGCAGTTATAAACAAG  830

seq1  TCAAGAAGAGTCCCATTTCCCTAATAAAACTAAAACCTTTAAAAAGTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGAGTCCCATTTCCCTAATAAAACTAAAACCTTTAAAAAGTAAT  880

seq1  TGTGGATATGAGTTAGGGCTTGCAAAAACTAAATCTGAGACTTGCCTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATATGAGTTAGGGCTTGCAAAAACTAAATCTGAGACTTGCCTCAA  930

seq1  TATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  980

seq1  TGTGTGATGAAACAGAGCTCTAAAAGGAATCTAATAAGATTTATATAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATGAAACAGAGCTCTAAAAGGAATCTAATAAGATTTATATAATT  1030

seq1  TATTCCTTTCTGGGGTGTGGAAACTTCTCAGCCACCATTAAAATGTTACC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTTCTGGGGTGTGGAAACTTCTCAGCCACCATTAAAATGTTACC  1080

seq1  TTGACATTTATTACAATTTTCACTTAAATTTTAACTTTTAATGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTTATTACAATTTTCACTTAAATTTTAACTTTTAATGAATTC  1128

seq1: chr4_88445339_88446564
seq2: B6Ng01-115I09.g_69_1287

seq1  GAATTCAGAATGGGAGAGAAAACTCGTGCTGACTTACAGAGGGAGGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATGGGAGAGAAAACTCGTGCTGACTTACAGAGGGAGGGTTG  50

seq1  ATGTCAGAAGGAGCAGAGACAGGCACACTTGACAGAAGCCCTCCCTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGAAGGAGCAGAGACAGGCACACTTGACAGAAGCCCTCCCTGTGG  100

seq1  GAGGCTGAGCAAGAGCCCATCTACCCGAAAATGCCCTTTTGGTGAGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGAGCAAGAGCCCATCTACCCGAAAATGCCCTTTTGGTGAGGGTG  150

seq1  ACTTTTGAGAGATGGAAACAGGGAGGAGGGGCCTGGCCAGGAGGAGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGAGAGATGGAAACAGGGAGGAGGGGCCTGGCCAGGAGGAGGAGC  200

seq1  GCCAACTTCCTGGCTGAGAGGTCCAACTGCTCCCTGCTCAGCAGAGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTTCCTGGCTGAGAGGTCCAACTGCTCCCTGCTCAGCAGAGCTCC  250

seq1  TGAGAGGAGAGGGGCAAGACCATACTGTCTGTCCTCTCTCTGGAACTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGAGAGGGGCAAGACCATACTGTCTGTCCTCTCTCTGGAACTGTC  300

seq1  TGCCTGTTGGGGCCCAGCTCTCCTCTCTGCCAACTCCACTTCCTTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTGGGGCCCAGCTCTCCTCTCTGCCAACTCCACTTCCTTCTTCT  350

seq1  CCACTCGCGTTAGAGAGCTGGAAGGGTCTGGCGGGCCACCCAAACGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCGCGTTAGAGAGCTGGAAGGGTCTGGCGGGCCACCCAAACGCACC  400

seq1  AAGATGCGAACCAAACAAACGAAAGGAAACCGAACCAAAGGAGACCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCGAACCAAACAAACGAAAGGAAACCGAACCAAAGGAGACCAAAC  450

seq1  CAAACCCAGCCCAGCCAAACCAAAACGCTGCTCTCTGGGCTTTGGAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCAGCCCAGCCAAACCAAAACGCTGCTCTCTGGGCTTTGGAGCCT  500

seq1  TCCCGGTTCCCCGAAAACATGTCCCCTGGCCCACCAATTCCGTCTGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGTTCCCCGAAAACATGTCCCCTGGCCCACCAATTCCGTCTGGGTT  550

seq1  CAATTCTCAAGGCGCGATGGATGGCGTACAGTCCTGTACGCGAAGGGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCAAGGCGCGATGGATGGCGTACAGTCCTGTACGCGAAGGGGCC  600

seq1  CGGGAGAGAGGCAGGAGACACTCCCTGCCTGCCCGGAGTCGCGCGCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGAGAGGCAGGAGACACTCCCTGCCTGCCCGGAGTCGCGCGCTGAA  650

seq1  CGGGGCGAACGGCCTCCGCAGGCGCCCGCTGCTGCCCTCCGGTGGCCCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCGAACGGCCTCCGCAGGCGCCCGCTGCTGCCCTCCGGTGGCCCGC  700

seq1  GCCCTCTGCTGCTGCTCCTGGCCTCAGAAGTCGCGTCCAGCGTCCAGCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGCTGCTGCTCCTGGCCTCAGAAGTCGCGTCCAGCGTCCAGCGC  750

seq1  AGCGCAGGCAGTCAGCGAGCAAGAGCCCGAAGCTCCGAGTGAACTATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCAGGCAGTCAGCGAGCAAGAGCCCGAAGCTCCGAGTGAACTATTAA  800

seq1  AGCAGCAAACTCCAGGCTCAATGGGAAGGCGGCCTTGCCCTCGCGCTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAACTCCAGGCTCAATGGGAAGGCGGCCTTGCCCTCGCGCTCCC  850

seq1  CCTGCAGGCCAGCCCCGCAATCGTCAGGCTTCAGCATGCTGCCTGTGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGGCCAGCCCCGCAATCGTCAGGCTTCAGCATGCTGCCTGTGCAT  900

seq1  CTATTCCTGGTGGGA-GGGGTGATGCTGAGCTGCAGCCCAG-CCAGCTCA  948
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  CTATTCCTGGTGGGAGGGGGTGATGCTGAGCTGCAGCCCAGCCCAGCTCA  950

seq1  CTTGATTCTGGTAAATCTGGGAGCCTGCACCTGG-AGCGCAGC-GAAACC  996
      |||||||||||||||||||||||||||||||||| |||| ||| ||| ||
seq2  CTTGATTCTGGTAAATCTGGGAGCCTGCACCTGGTAGCGAAGCGGAATCC  1000

seq1  GCG-CGCTTCCTAGCAGAGCTCCGAAGCGTGCCGGGTCACCAGTGCCTGC  1045
      ||| | |||| |||||||||||||||||||| ||||||| ||||  ||||
seq2  GCGCCCCTTCTTAGCAGAGCTCCGAAGCGTG-CGGGTCA-CAGTTGCTGC  1048

seq1  GGGACAGGACCGATTTCCCATGTCCCTGGAAGGAAGGAACTAACATCACA  1095
      |||||||||||||||| ||||||||||||||| |||||||| ||||| ||
seq2  GGGACAGGACCGATTT-CCATGTCCCTGGAAGAAAGGAACT-ACATCTCA  1096

seq1  -CCGAT--GACTCTGGGAGAAACCACCAGTTGCTACTCCCAGACCCTCAG  1142
       |||||   ||||||||||||| |  |||||||| || |||||  |||||
seq2  CCCGATTGAACTCTGGGAGAAAACCACAGTTGCT-CT-CCAGA--CTCAG  1142

seq1  GCAGGTCCTCCACCTCTTTGACACAGAGGCCAGCAGAGCTGCCTGGCACG  1192
      |||||| ||| |||||||||| ||| ||||     || ||| ||||   |
seq2  GCAGGT-CTCTACCTCTTTGAGACA-AGGC---ATGAACTG-CTGGTCAG  1186

seq1  AGAGGGCGCTGGACCAGC-TACTATCTAGCCTGTG  1226
      | ||||  || ||||| |   ||||||||||||||
seq2  A-AGGGGTCT-GACCATCACTCTATCTAGCCTGTG  1219