BAC Information

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BAC

Clone NameB6Ng01-115I12
Chromosome4 (Build37)
Map Location 118,539,147 - 118,540,086
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1
Downstream geneOlfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115I12.bB6Ng01-115I12.g
ACCDH920771DH920772
length1,228942
definitionDH920771|Mus musculus domesticus DNA, BAC clone: B6Ng01-115I12, 5' end.DH920772|Mus musculus domesticus DNA, BAC clone: B6Ng01-115I12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgttccccatttttaatagggttatttggttc
tctggagtctaacttcttgagttctttgtatattggatattaaccctcta
ttggatgtaggattgttaaagatcttatcctaatctcttggttgttgttt
tgtcctattgacagtgtcctttgccttacagaaggtttgcaattttatga
ggttcccatctgtcaattcttaatcttaaaacataagccattcatgttct
gttcaggaacttttcccctgtgcctatgtgtttgaggctttcccccactt
tcccttctattacattcagtgtatttggttttatgtggaggtccttgatc
cacttggacttgacctttgtacaaggagataaggatggatcaatttgcat
tcttctacatgttgaccaccagctgatccagtatcatttgttgaaaatgc
tcttttttccactgtatgattttagcttctttgtcaaagatcaagtgacc
ataggtgtgtggtttcatttctgggtcttcaattctattccattgatcta
cctgcctgtcactgtaccaataccatgcaatttttatcactattgctctg
tagtacagcttgaggtcagggatggtgattcctccagaagttcttttatt
gttgagaatagtttttgatatcctaggtgttttgttattccaaataaatt
tgagaattgctctttttaattctgtgaagaattgagtttgaactttgata
gggattacattgaatctgtagattgctttcagcgagatgaccgtattgac
tatattaatcctgccaatccatgagcatgggagatctttccatcttccga
agtcttcttcaatttctttcttcacagacttgaagttcttgccatacaga
tctttcatttgtttggttagagtcttatgaagatattttatattgtttgt
gactattgtgaaagggtatcatttcccttatttagtttcagcccattatc
cttgtagtatagagactactgattgtctagttaattttatatccagcact
ttgtgagtgctcatcaggttagagttctctggtgaatttggtcacttcat
catactatcattacatctgggatgtaatttgactctcatttcacggatcc
tccctctttgtgcaatgcgctagccttggatcttatgaacgggtaggaga
tatggaaccgctgctacgagtatgtcta
gaattcagttactaggagaagaaggaaaacccctctagaagtcttcagat
tttatctggctaatgaacaagaactacaggatttatcctacctgagttgg
gtctgggaggtggcagcacagcaggcaaggcttcctggccaagctgagtc
ctgctgtgtgggcatcactgggcaggtgttggtccccactctatagtgag
gtgctaggtgcgtgccttgcagtttgagagaagcagaggtgtccaggata
tccggagcttttgcatagagacttgagagtggagagagaggaatggagaa
gacagctgtgtgttgtgattggagtcttcagtgagtagagcattggggtt
tactattgtcattgtggtaggtgagtggtgtagggagcctcagggatgac
aggagcctgtgtggctgtttacactgtggtctcacagcttctcagtgctt
attgagatagccacattgcagaaatatcctttacattaattaatttatat
ttatttatttattcctttttctattgggaagtctgtttttttgtaaggct
cctctacaaataattccttgtaagaatctttggagtaattcttttttgat
actgtctgatttattgctttttttgtctggggaaactattttatattgcc
ttcttaaaagaatctttacccactaaagataaaaatactccattggtttt
gattctaaaatttggttgttttataaccgtattttaaaccagtggtagac
ctggaattgagtcttgtgtgtgcagagggaggaggatgtgatacagaaag
gagagttttcatcaatgaatacacacacaatccaccagcatctattggag
atactatggtagctccttggtcactgtagaatgccttccatcaaaaacca
tttgactgttggtggggggcctgtgtctgaattattctgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118539147_118540086
seq2: B6Ng01-115I12.g_68_1009

seq1  GAATTCAGTTACTAGGAGAAGAAGGAAAACCCCTCTAGAAGTCTTCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTACTAGGAGAAGAAGGAAAACCCCTCTAGAAGTCTTCAGAT  50

seq1  TTTATCTGGCTAATGAACAAGAACTACAGGATTTATCCTACCTGAGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGGCTAATGAACAAGAACTACAGGATTTATCCTACCTGAGTTGG  100

seq1  GTCTGGGAGGTGGCAGCACAGCAGGCAAGGCTTCCTGGCCAAGCTGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGAGGTGGCAGCACAGCAGGCAAGGCTTCCTGGCCAAGCTGAGTC  150

seq1  CTGCTGTGTGGGCATCACTGGGCAGGTGTTGGTCCCCACTCTATAGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGTGGGCATCACTGGGCAGGTGTTGGTCCCCACTCTATAGTGAG  200

seq1  GTGCTAGGTGCGTGCCTTGCAGTTTGAGAGAAGCAGAGGTGTCCAGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGGTGCGTGCCTTGCAGTTTGAGAGAAGCAGAGGTGTCCAGGATA  250

seq1  TCCGGAGCTTTTGCATAGAGACTTGAGAGTGGAGAGAGAGGAATGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAGCTTTTGCATAGAGACTTGAGAGTGGAGAGAGAGGAATGGAGAA  300

seq1  GACAGCTGTGTGTTGTGATTGGAGTCTTCAGTGAGTAGAGCATTGGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGTGTGTTGTGATTGGAGTCTTCAGTGAGTAGAGCATTGGGGTT  350

seq1  TACTATTGTCATTGTGGTAGGTGAGTGGTGTAGGGAGCCTCAGGGATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGTCATTGTGGTAGGTGAGTGGTGTAGGGAGCCTCAGGGATGAC  400

seq1  AGGAGCCTGTGTGGCTGTTTACACTGTGGTCTCACAGCTTCTCAGTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTGTGTGGCTGTTTACACTGTGGTCTCACAGCTTCTCAGTGCTT  450

seq1  ATTGAGATAGCCACATTGCAGAAATATCCTTTACATTAATTAATTTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGATAGCCACATTGCAGAAATATCCTTTACATTAATTAATTTATAT  500

seq1  TTATTTATTTATTCCTTTTTCTATTGGGAAGTCTGTTTTTTTGTAAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTCCTTTTTCTATTGGGAAGTCTGTTTTTTTGTAAGGCT  550

seq1  CCTCTACAAATAATTCCTTGTAAGAATCTTTGGAGTAATTCTTTTTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACAAATAATTCCTTGTAAGAATCTTTGGAGTAATTCTTTTTTGAT  600

seq1  ACTGTCTGATTTATTGCTTTTTTTGTCTGGGGAAACTATTTTATATTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGATTTATTGCTTTTTTTGTCTGGGGAAACTATTTTATATTGCC  650

seq1  TTCTTAAAAGAATCTTTACCCACTAAAGATAAAAATACTCCATTGGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAAGAATCTTTACCCACTAAAGATAAAAATACTCCATTGGTTTT  700

seq1  GATTCTAAAATTTGGTTGTTTTATAACCGTATTTTAAACCAGTGGTAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAAAATTTGGTTGTTTTATAACCGTATTTTAAACCAGTGGTAGAC  750

seq1  CTGGAATTGAGTCTTGTGTGTGCAGAGGGAGGAGGATGTGATACAGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTGAGTCTTGTGTGTGCAGAGGGAGGAGGATGTGATACAGAAAG  800

seq1  GAGAGTTTTCATCAATGAATACACACACAATCCACCAGCATCTATTGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTTCATCAATGAATACACACACAATCCACCAGCATCTATTGGAG  850

seq1  ATACTATGGTAGCTCC-TGGCCACTGTAGAATGCCTTCCATCAAAAACCA  899
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  ATACTATGGTAGCTCCTTGGTCACTGTAGAATGCCTTCCATCAAAAACCA  900

seq1  TTTGACTGTTG--TGGGGGTCTGTGTCTGAATTTTTTCTGTTC  940
      |||||||||||   ||||| ||||||||||| || ||||||||
seq2  TTTGACTGTTGGTGGGGGGCCTGTGTCTGAA-TTATTCTGTTC  942