BAC Information

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BAC

Clone NameB6Ng01-115I20
Chromosome4 (Build37)
Map Location 117,749,836 - 117,886,437
singlet/doubletdoublet
Overlap geneSt3gal3, Jmjd2a, Ptprf
Upstream genePtch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn
Downstream geneHyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115I20.bB6Ng01-115I20.g
ACCDH920785DH920786
length1,035896
definitionDH920785|Mus musculus domesticus DNA, BAC clone: B6Ng01-115I20, 5' end.DH920786|Mus musculus domesticus DNA, BAC clone: B6Ng01-115I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,749,836 - 117,750,869)(117,885,545 - 117,886,437)
sequence
gaattccaggacagccaaggctacacggagaaaccctgtcttgaaaacca
aaaaaaaaaaaaaaaagaaaagaaaaaaaaaaaagagtcagggtctcttg
ctgaacccagagctcacggattccagcaagactagctctccatccggctt
gccctggggattccgacttggcctcccaagtgctggaattacaagcagct
tccacgcctggctggcttttatgtgagctctggggatctgaactccaatg
ctgacattctgatgtagcccagtaaacgctggattttcttaaattgatcc
atccatatatacgaattctcagacctttttggcaggaatctgttcacaat
atccctgtggtctgtaaaaagcccgcggcttctgctgcgttcactcgttc
cttcccagctgctcctcctcccccacctcctctgtcatctgccctgccag
ggatttctcagttttatcgctctctggagagaccgccttcctttggtggt
cttctgtatagaccaaagtcctcctgtttcctcctttgagtttaagctgc
tatacaggttttttttttttttaacttaaaaataagttagagacttacat
taatttgtgtgtgtgtgtctgtgtgtgacatgtaccggtgcccaaggagg
cgagaagaggccaccggatgtcctggagctggagtcacaggctgttgtgc
catctaagggatgtggatgctgggaactgagctcactcaggacctctggc
agagcagaaagtgttcttaatcgccgagccatctctccagtccttacatt
tttttttcccaatatttattttgttttcagtggatggggtgatttcactg
catccctgcctgtgcagcacatgcgtgcagtgcccacaaaggccaaaaaa
agcgtcagatcccctgaaacacaggtttgtgagctgccatgtggatttgg
ggaatcgagctggagttcttgtgggagagcagccagtgccagacattgct
gcttagtaacctaggtggcctccaacgtgtgattc
gaattccaactcggaggtgaacaagcccaagaaccgctatgcaaatgtca
ttgcctatgaccattctcgagtcctcctcacctccattgatggtgagccc
ggggcacagtgcccccttgccctttgctgtcctgtaccctgctctccaga
atgctctgagccccaggttaacactctcgaatccctttgcattcctgtag
gtgttcctgggagtgactacatcaatgccaactacattgatggctaccga
aagcagaatgcctacatcgccacacagggtccgctgcccgagaccatggg
cgatttctggaggatggtgtgggaacagcgcacagccacagtggtcatga
tgaccaggctagaggagaaatcccgggtgaggggggtgatgctgggtacc
acctcctgtgagtgttttcaagggactccccaaaggctgtggttttcctg
gagtattgtctcatcccctagatagaggggaactgctgggatgtaatgta
atgtggtccccaggtgtttatgggttcccgggatgttaatatgttttacc
aaatgctgtcgttttctggaatgttaatatgttccccagtttctggggtg
ttcctggggtattcacatgttccccagatgccagagtgctcctgggggtg
ttcacacatctaagttaattagtggaaggagctgctgatgtctgcttttg
catcgcgaagcattgactggaacataaaattttacagagcttgaaaatgg
ggcataaacgttatgggtaaattttgcagaaaatgtgcctggtacgatct
ggtgttgaataaataattttcattaatggtcctccttcagtcagtgaagg
ccagggtggttagcttattgtgaagaggtttggagaagaagaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_117749836_117750869
seq2: B6Ng01-115I20.b_45_1079

seq1  GAATTCCAGGACAGCCAAGGCTACACGGAGAAACCCTGTCTTGAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAAGGCTACACGGAGAAACCCTGTCTTGAAAACCA  50

seq1  AAAAAAAAAAAAAAAAGAAAAGAAAAAAAAAAAAGAGTCAGGGTCTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAGAAAAGAAAAAAAAAAAAGAGTCAGGGTCTCTTG  100

seq1  CTGAACCCAGAGCTCACGGATTCCAGCAAGACTAGCTCTCCATCCGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCCAGAGCTCACGGATTCCAGCAAGACTAGCTCTCCATCCGGCTT  150

seq1  GCCCTGGGGATTCCGACTTGGCCTCCCAAGTGCTGGAATTACAAGCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGGATTCCGACTTGGCCTCCCAAGTGCTGGAATTACAAGCAGCT  200

seq1  TCCACGCCTGGCTGGCTTTTATGTGAGCTCTGGGGATCTGAACTCCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGCCTGGCTGGCTTTTATGTGAGCTCTGGGGATCTGAACTCCAATG  250

seq1  CTGACATTCTGATGTAGCCCAGTAAACGCTGGATTTTCTTAAATTGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATTCTGATGTAGCCCAGTAAACGCTGGATTTTCTTAAATTGATCC  300

seq1  ATCCATATATACGAATTCTCAGACCTTTTTGGCAGGAATCTGTTCACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATATATACGAATTCTCAGACCTTTTTGGCAGGAATCTGTTCACAAT  350

seq1  ATCCCTGTGGTCTGTAAAAAGCCCGCGGCTTCTGCTGCGTTCACTCGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTGGTCTGTAAAAAGCCCGCGGCTTCTGCTGCGTTCACTCGTTC  400

seq1  CTTCCCAGCTGCTCCTCCTCCCCCACCTCCTCTGTCATCTGCCCTGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGCTGCTCCTCCTCCCCCACCTCCTCTGTCATCTGCCCTGCCAG  450

seq1  GGATTTCTCAGTTTTATCGCTCTCTGGAGAGACCGCCTTCCTTTGGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTCAGTTTTATCGCTCTCTGGAGAGACCGCCTTCCTTTGGTGGT  500

seq1  CTTCTGTATAGACCAAAGTCCTCCTGTTTCCTCCTTTGAGTTTAAGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTATAGACCAAAGTCCTCCTGTTTCCTCCTTTGAGTTTAAGCTGC  550

seq1  TATACAGGTTTTTTTTTTTTTTAACTTAAAAATAAGTTAGAGACTTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGGTTTTTTTTTTTTTTAACTTAAAAATAAGTTAGAGACTTACAT  600

seq1  TAATTTGTGTGTGTGTGTCTGTGTGTGACATGTACCGGTGCCCAAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTGTGTGTGTGTCTGTGTGTGACATGTACCGGTGCCCAAGGAGG  650

seq1  CGAGAAGAGGCCACCGGATGTCCTGGAGCTGGAGTCACAGGCTGTTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAGAGGCCACCGGATGTCCTGGAGCTGGAGTCACAGGCTGTTGTGC  700

seq1  CATCTAAGGGATGTGGATGCTGGGAACTGAGCTCACTCAGGACCTCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAGGGATGTGGATGCTGGGAACTGAGCTCACTCAGGACCTCTGGC  750

seq1  AGAGCAGAAAGTGTTCTTAATCGCCGAGCCATCTCTCCAGTCCTTACA-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGAGCAGAAAGTGTTCTTAATCGCCGAGCCATCTCTCCAGTCCTTACATT  800

seq1  TTTTTTTCCCAATATTTATTTTGTTTTCAGTGGAT-GGGTGATTTCACTG  848
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTTTTCCCAATATTTATTTTGTTTTCAGTGGATGGGGTGATTTCACTG  850

seq1  CATCCCTGCCTGTGCAGCACATGCGTGCAGTGCCCACAAAGGCC-AGAAG  897
      |||||||||||||||||||||||||||||||||||||||||||| | || 
seq2  CATCCCTGCCTGTGCAGCACATGCGTGCAGTGCCCACAAAGGCCAAAAAA  900

seq1  AGCGTCAGATCCCCTGAAACACAGGTTTGTGAGCTGCCATGTGGATTTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCAGATCCCCTGAAACACAGGTTTGTGAGCTGCCATGTGGATTTGG  950

seq1  GGAATCGAGCTGGAG-TCCTGTGGGAGAGCAGCCAGTGCCAAGACATTGC  996
      ||||||||||||||| || ||||||||||||||||||||| |||||||||
seq2  GGAATCGAGCTGGAGTTCTTGTGGGAGAGCAGCCAGTGCC-AGACATTGC  999

seq1  TGCTTAAGTAACCTAGGTGGGCCTCCAACGTGTGATTC  1034
      ||||| |||||||||||| |||||||||||||||||||
seq2  TGCTT-AGTAACCTAGGT-GGCCTCCAACGTGTGATTC  1035

seq1: chr4_117885545_117886437
seq2: B6Ng01-115I20.g_67_962 (reverse)

seq1  TCCCTCTTCCTCTCCAAACCTCCTCACACTAAGCT-ACCACCCTGGCCCT  49
      ||||||||| |||||||||||| ||||| |||||| |||||||||||| |
seq2  TCCCTCTTCTTCTCCAAACCTCTTCACAATAAGCTAACCACCCTGGCCTT  50

seq1  CACTGGCTGAAGGAGGACCATAATTGAAAATTATTTATTCAACACCAGAT  99
      ||||| ||||||||||||||| | ||||||||||||||||||||||||||
seq2  CACTGACTGAAGGAGGACCATTAATGAAAATTATTTATTCAACACCAGAT  100

seq1  CGTACCAGGCACATTTTCTGCCAAATTTACCCATAACGTTTATGCCCCAT  149
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGTACCAGGCACATTTTCTGCAAAATTTACCCATAACGTTTATGCCCCAT  150

seq1  TTTCAAGCTCTGT-AAATTTTATGTTCCAGTCAATGCTTCGCGGTGCAAA  198
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  TTTCAAGCTCTGTAAAATTTTATGTTCCAGTCAATGCTTCGCGATGCAAA  200

seq1  AGCAGACATCAGCAGCTCCTTCCACTAATTAACTTAGATGTGTGAACA-C  247
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGCAGACATCAGCAGCTCCTTCCACTAATTAACTTAGATGTGTGAACACC  250

seq1  CCCAGGAGCACTCTGGCATCTGGGGAACATGTGAATACCCCAGGAACACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGCACTCTGGCATCTGGGGAACATGTGAATACCCCAGGAACACC  300

seq1  CCAGAAACTGGGGAACATATTAACATTCCAGAAAACGACAGCATTTGGTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAACTGGGGAACATATTAACATTCCAGAAAACGACAGCATTTGGTA  350

seq1  AAACATATTAACATCCCGGGAACCCATAAACACCTGGGGACCACATTACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATTAACATCCCGGGAACCCATAAACACCTGGGGACCACATTACA  400

seq1  TTACATCCCAGCAGTTCCCCTCTATCTAGGGGATGAGACAATACTCCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCCCAGCAGTTCCCCTCTATCTAGGGGATGAGACAATACTCCAGG  450

seq1  AAAACCACAGCCTTTGGGGAGTCCCTTGAAAACACTCACAGGAGGTGGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACAGCCTTTGGGGAGTCCCTTGAAAACACTCACAGGAGGTGGTA  500

seq1  CCCAGCATCACCCCCCTCACCCGGGATTTCTCCTCTAGCCTGGTCATCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATCACCCCCCTCACCCGGGATTTCTCCTCTAGCCTGGTCATCAT  550

seq1  GACCACTGTGGCTGTGCGCTGTTCCCACACCATCCTCCAGAAATCGCCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTGTGGCTGTGCGCTGTTCCCACACCATCCTCCAGAAATCGCCCA  600

seq1  TGGTCTCGGGCAGCGGACCCTGTGTGGCGATGTAGGCATTCTGCTTTCGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCGGGCAGCGGACCCTGTGTGGCGATGTAGGCATTCTGCTTTCGG  650

seq1  TAGCCATCAATGTAGTTGGCATTGATGTAGTCACTCCCAGGAACACCTAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATCAATGTAGTTGGCATTGATGTAGTCACTCCCAGGAACACCTAC  700

seq1  AGGAATGCAAAGGGATTCGAGAGTGTTAACCTGGGGCTCAGAGCATTCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGCAAAGGGATTCGAGAGTGTTAACCTGGGGCTCAGAGCATTCTG  750

seq1  GAGAGCAGGGTACAGGACAGCAAAGGGCAAGGGGGCACTGTGCCCCGGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGGTACAGGACAGCAAAGGGCAAGGGGGCACTGTGCCCCGGGC  800

seq1  TCACCATCAATGGAGGTGAGGAGGACTCGAGAATGGTCATAGGCAATGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCAATGGAGGTGAGGAGGACTCGAGAATGGTCATAGGCAATGAC  850

seq1  ATTTGCATAGCGGTTCTTGGGCTTGTTCACCTCCGAGTTGGAATTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATAGCGGTTCTTGGGCTTGTTCACCTCCGAGTTGGAATTC  896