BAC Information

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BAC

Clone NameB6Ng01-115O02
Chromosome4 (Build37)
Map Location 146,706,860 - 146,707,371
singlet/doubletsinglet
Overlap geneLOC666581
Upstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115O02.bB6Ng01-115O02.g
ACCDH921028DH921029
length1,210965
definitionDH921028|Mus musculus domesticus DNA, BAC clone: B6Ng01-115O02, 5' end.DH921029|Mus musculus domesticus DNA, BAC clone: B6Ng01-115O02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgc
tttacccaacaatcctgtcttagtattcatcagagaattcatacaggaga
gaaaccttacaaatgcagtgaatgtgacaaatgctttacccaacaatcct
gtcttagtattcatcagagaattcatacaggagagaaaccttacaaatgc
agtgaatgtggcaaatgctttactgaaaaaagcagtctgagaattcatca
gagaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaat
gctttacccaacaatccaatcttactattcatcagagaattcatacagga
gagaaaccttacaaatgccctgaatgtggcaaatgctttactgaaaaaag
cagtctgagaattcatcagagaattcatacaggagagaaaccttacaaat
gcagtgaatgtggcaaatgctttactgaaaaaagcagtctgagaattcat
cagagaattcatacaggagagaaaccttacaaatgcaatgaatgtggcaa
atgctttactgaaaaaagcagtctgagaattcatcagagaattcatacag
gagagaaaccttacaaatgcagtgaatgtggcaaatgctttactgtaaaa
agcagtctgagaattcatcagagaattcatacaggagagaaaccttacaa
atgcagtaaatgtgacaaatgctttaccaaacaatccaatcttagtattc
atcagagaattcatacaggagagaaaccttacaaatgcagtgaatgtgaa
aaatgctttaatgaaaaaaacattctgaaaattcatcagagaattcatac
aggagagagaccttacaaatgcagtgaatgtgaaaaatgcttttcccgaa
aattccatcttggtattcatcagagaattcatacaggaaagaaaccttac
aaatagattgtatgtgacaaaatacaatactcaacaatgtcagtcttaga
aatcatcagttatttcataaaagtagaagaatcttttataaatgaagtaa
atgaggcaattctttaccaagaattttttatctcaaattcatagaggaat
acttaagagaaggacaaaccttttcaaatattatttgtaggatgatcctt
tcctttggcctaattcctaacgtaactggatacctacaggcctagaaact
taactcatgc
gaattctcagacagccattttcagtaaaggatttgtcacattcattacat
ttgtaaggtttctctcctgtatgaattatctgatgccttctcagactgtg
tttgtcagtaaagcatttgtcgcattcattgcatttgtaaggttctcttc
tgaatgaattttctgatgaatactaagatggcattgttgggtaaagcatt
tgtcacattcactgcatttgtacagtttctctcctgtatgaattctctga
tgaatactaagatgtgattttccggtaaagcatttgtcacattcactgca
tttataaggtttctctcctgcatgaattctatgatgaactctcagagagc
ctttgtgagtaaagcatttgtcacattcactacatttgtaagatttctct
cctgcatgaattctatgatgaactctcagatagcctttgtcagtaaagca
tttgtcgcattcactacatttgtaaggtttctctcctgcatgaattctat
gatgaactctaagactgcttttgtcagtaaagcatttgtcacactcactg
cattggtacggtttctctcctgtatgaattctctgatgaactctcagact
gcctttgtcagtaaagcatttgtcgcattcactacatttgtaaggtttct
ctcctgaatgaattctacgatgaatactaagatggggatggttgggtaaa
gcatttgtcacactcactgcatttgtacggtttctctcctatatgaattc
tctgatgaactctcagactgcctttgtcagtaaagcatttgtcgcattca
ctacatttgtaaggtttctctcctgaatgaattctacgatgaatactaag
atgggatggttggtaaagcatttgtcacactcactgcatttgcaaggttt
ctctcctgaatgattctctgatgaactctcagactgccttggtcagtaaa
tcattgtcaacatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146706860_146707371
seq2: B6Ng01-115O02.b_739_1254

seq1  TTACAAATGCAGTGAATGTGACAAATGCTTTACCAAACAATCCAATCTTA  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTACAAATGCAGTAAATGTGACAAATGCTTTACCAAACAATCCAATCTTA  50

seq1  GTATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAA  100

seq1  TGTGAAAAATGCTTTTCCCGAAAATTACA-TCTTGGTATTCATCAGAGAA  149
      |||||||||||| |||   |||||  ||| |||    |||||||||||||
seq2  TGTGAAAAATGC-TTTAATGAAAAAAACATTCTGAAAATTCATCAGAGAA  149

seq1  TTCATACAGGAGAGAGACCTTACAAATGCAGTGAATGTGAAAAATGCTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAGGAGAGAGACCTTACAAATGCAGTGAATGTGAAAAATGCTTT  199

seq1  TCCCGAAAATTCCATCTTGGTATTCATCAGAGAATTCATACAGGAAAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAAAATTCCATCTTGGTATTCATCAGAGAATTCATACAGGAAAGAA  249

seq1  ACCTTACAAATAGATTGTATGTGAC-AAATACAATACTC-ACAATGTCAG  297
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  ACCTTACAAATAGATTGTATGTGACAAAATACAATACTCAACAATGTCAG  299

seq1  TCTTAGAAATCATCAGTTATTTCAT-ACAGTAG-AGAATC-TTTATAAAT  344
      ||||||||||||||||||||||||| | ||||| |||||| |||||||||
seq2  TCTTAGAAATCATCAGTTATTTCATAAAAGTAGAAGAATCTTTTATAAAT  349

seq1  GAAGTAAATGAGGCAATTCTTTACCAAG-ATATATTATCTCAAAATTCAT  393
      |||||||||||||||||||||||||||| || | ||||||| ||||||| 
seq2  GAAGTAAATGAGGCAATTCTTTACCAAGAATTTTTTATCTC-AAATTCA-  397

seq1  TAGA-GAATACTT-AGAGAA-GACAAA-CTTTTCAAATAT--ATTGTAGG  437
      |||| |||||||| |||||| |||||| ||||||||||||   |||||||
seq2  TAGAGGAATACTTAAGAGAAGGACAAACCTTTTCAAATATTATTTGTAGG  447

seq1  TATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGAATACT  487
       ||| ||||||||| ||||||||| |||||| || |||||  || |||| 
seq2  -ATG-ATCCTTTCC-TTTGGCCTAATTCCTA-AC-GTAAC--TGGATACC  490

seq1  TACAGG-CTAGAAACTTAACTCATGC  512
      |||||| |||||||||||||||||||
seq2  TACAGGCCTAGAAACTTAACTCATGC  516