BAC Information

Click to search

BAC

Clone NameB6Ng01-116A04
Chromosome4 (Build37)
Map Location 128,561,011 - 128,719,657
singlet/doubletdoublet
Overlap geneTrim62, Adc, Ak2
Upstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354
Downstream geneIbrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116A04.bB6Ng01-116A04.g
ACCDH921121DH921122
length1,174979
definitionDH921121|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A04, 5' end.DH921122|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,718,482 - 128,719,657)(128,561,011 - 128,561,998)
sequence
gaattcaatgatttcgtctggcttccacaggcaccaggaacacatgcaga
caaagcacccatactcacaaaataataattaaaaaaataagccgggtgtg
gtggcacacgcctttaatcccagcactcgggaggcagaggcaggcgggtt
tctgagttcgaggccagtctggtctacagagtgagttcaggagagccagg
gctacacagagaaaccctgtctcgaaaaaccaataaataaataaataaat
aaataaataaatagtaagtgtttatttctgtgccaggcactttacattca
ttatctcaacaactctatgtggacctgagaggtagatatgaccccatttt
atagacgaggaaaccagctaacagaggccgaaggacgtgaccaagatcac
atagttgatgagtgagggttccagcccagttgactccaaattgctctccc
agtggaaacaaaacatcccctgagagttttatgcctcaccttttgctaag
cagccggtcactcagttctgcctgcagaggaatgtgtgagtctggtctct
aagtcagaaagagttggctctgggaatgccaggaggagctgtaggcccct
gaggacctgaatgcatctttcctgagccataactttattgcaacaaatgc
tcctccctgggatccttgaagctggagtcgttttccctggaaggatggag
cccagttgttactgggtggccatattcccacgaaatgtggagataggaaa
catgtggggaagctgtagttgtcagaggacaagctatcactggcagaccc
aacggaatcaaaaaaggctggtgcagggatcagacagggatctgcgggtc
tgtggcctgggagacctactttctcatccactgtgtgatctctggcgagc
tcctgcctctctctggacctcgctttcacaccttttgtgtaaaaccagcc
agactacatacgctgtaaactgaacaggcaccaggcagttagaattaaat
ggatacaggacaggcagagactccttcaggggggtcacaagagatggaag
actgtgttctcctccttctgcccaagccatcttgaccctctgccggagta
aaggatagctctttttgccactcggagctaatctagcacccttaggcctc
aattttgtaggaacatccatttgg
gaattccccatccccagctcgaccccctctcaaagcttttcgggtcccgg
gattccgcccctcttcgggatctcctcctcgcagcatctatcccttggga
gtgtctggtcctctagatcctcctcgcctggagccccttccttgggacgc
cctcggcctctctcctccagcgcccatcgctggtggccacctaggacctc
gaaaccgagctccggtgctcgcatcccgggtggcacccactcggcaccga
gccctcgcgcctccggcgtcgcagacagctccccccgcgctccccggcgc
ctgtcgcccgtgcccccgtgggcctggcccccgggtaccgcccccaatcg
cgccgcgccggccgccggcctcccgggctccgcttcgcgccgcccctggc
gccatggcgtgcagcctcaaggacgagctgctgtgctccatctgcctgag
catctaccaggacccggtgagcctgggctgcgagcactacttctgccgcc
gctgcatcaccgagcactgggtgcggcaggaggctcagggcgcccgcgac
tgcccggagtgccggcgcacgttcgccgagcccgcgctcgcgcccagcct
caagctggccaacatcgtggagcgctacagcgccttcccgctggacgcca
tcctcaacgcgcgccgagccgcgcgaccctgccaggctcacgacaaggtc
aagctcttctgcctcacggaccgcgcactgctctgcttcttctgtgatga
gcccgcgctgcacgagcaacaccaggtcactggcatcgacgatgccttcg
aggagttgcagtgcgaggcggacaggcggggctgtagttggggtcaggtt
ccaataggggcaagggcacagccggcttaatgccaaaggggcgtggcttc
tgtgagggcgggcagggcgggtccttgatcatcactgtgtcaatgggctt
gagagagatctggatgggagacaggtcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_128718482_128719657
seq2: B6Ng01-116A04.b_49_1222 (reverse)

seq1  CCAAAT-GCTG-TCCTACAAAAGTGA-GCCTAGGGTGGCTAGAATTAGCT  47
      |||||| | || |||||||||| ||| ||||| ||  ||||| |||||||
seq2  CCAAATGGATGTTCCTACAAAATTGAGGCCTAAGGGTGCTAG-ATTAGCT  49

seq1  CCGAGTGGC-AAAAGAGCTATCCTTTACCTTCAGCCAGAGGGTCAGGATG  96
      ||||||||| ||||||||||||||||||  || | |||||||||| ||||
seq2  CCGAGTGGCAAAAAGAGCTATCCTTTAC--TCCGGCAGAGGGTCAAGATG  97

seq1  GCCTGGGGCAGAAGAGAGAGAACACAGTCTTCCATCTCTTGTGACCCCCC  146
      | || |||||||||   |||||||||||||||||||||||||||||||||
seq2  G-CTTGGGCAGAAGGAGGAGAACACAGTCTTCCATCTCTTGTGACCCCCC  146

seq1  TGGAGGAGTCTCTGCCTGTTCCTGTATCCATTTAATTCTAACTGCCTGGT  196
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAAGGAGTCTCTGCCTG-TCCTGTATCCATTTAATTCTAACTGCCTGGT  195

seq1  GCCTGTTCAGTTTACAGCGTATGTAGTCTGGCTGGTTTTTACACAAAAGG  246
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCCTGTTCAGTTTACAGCGTATGTAGTCTGGCTGG-TTTTACACAAAAGG  244

seq1  TGTGAAAGCGAGGTCCAGAGAGAGGCAGGAGCTCGCCAGAGATCACACAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGCGAGGTCCAGAGAGAGGCAGGAGCTCGCCAGAGATCACACAG  294

seq1  TGGATGAGAAAGTAGGTCTCCCAGGCCACAGACCCGCAGATCCCTGTCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAGAAAGTAGGTCTCCCAGGCCACAGACCCGCAGATCCCTGTCTG  344

seq1  ATCCCTGCACCAGCCTTTTTTGATTCCGTTGGGTCTGCCAGTGATAGCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGCACCAGCCTTTTTTGATTCCGTTGGGTCTGCCAGTGATAGCTT  394

seq1  GTCCTCTGACAACTACAGCTTCCCCACATGTTTCCTATCTCCACATTTCG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGACAACTACAGCTTCCCCACATGTTTCCTATCTCCACATTTCG  444

seq1  TGGGAATATGGCCACCCAGTAACAACTGGGCTCCATCCTTCCAGGGAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATATGGCCACCCAGTAACAACTGGGCTCCATCCTTCCAGGGAAAA  494

seq1  CGACTCCAGCTTCAAGGATCCCAGGGAGGAGCATTTGTTGCAATAAAGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCCAGCTTCAAGGATCCCAGGGAGGAGCATTTGTTGCAATAAAGTT  544

seq1  ATGGCTCAGGAAAGATGCATTCAGGTCCTCAGGGGCCTACAGCTCCTCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGGAAAGATGCATTCAGGTCCTCAGGGGCCTACAGCTCCTCCT  594

seq1  GGCATTCCCAGAGCCAACTCTTTCTGACTTAGAGACCAGACTCACACATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCCCAGAGCCAACTCTTTCTGACTTAGAGACCAGACTCACACATT  644

seq1  CCTCTGCAGGCAGAACTGAGTGACCGGCTGCTTAGCAAAAGGTGAGGCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAGGCAGAACTGAGTGACCGGCTGCTTAGCAAAAGGTGAGGCAT  694

seq1  AAAACTCTCAGGGGATGTTTTGTTTCCACTGGGAGAGCAATTTGGAGTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTCAGGGGATGTTTTGTTTCCACTGGGAGAGCAATTTGGAGTCA  744

seq1  ACTGGGCTGGAACCCTCACTCATCAACTATGTGATCTTGGTCACGTCCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCTGGAACCCTCACTCATCAACTATGTGATCTTGGTCACGTCCTT  794

seq1  CGGCCTCTGTTAGCTGGTTTCCTCGTCTATAAAATGGGGTCATATCTACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTCTGTTAGCTGGTTTCCTCGTCTATAAAATGGGGTCATATCTACC  844

seq1  TCTCAGGTCCACATAGAGTTGTTGAGATAATGAATGTAAAGTGCCTGGCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGTCCACATAGAGTTGTTGAGATAATGAATGTAAAGTGCCTGGCA  894

seq1  CAGAAATAAACACTTACTATTTATTTATTTATTTATTTATTTATTTATTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAAACACTTACTATTTATTTATTTATTTATTTATTTATTTATTG  944

seq1  GTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTCTCCTGAACTCAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTCTCCTGAACTCAC  994

seq1  TCTGTAGACCAGACTGGCCTCGAACTCAGAAACCCGCCTGCCTCTGCCTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGACCAGACTGGCCTCGAACTCAGAAACCCGCCTGCCTCTGCCTC  1044

seq1  CCGAGTGCTGGGATTAAAGGCGTGTGCCACCACACCCGGCTTATTTTTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGCTGGGATTAAAGGCGTGTGCCACCACACCCGGCTTATTTTTTT  1094

seq1  AATTATTATTTTGTGAGTATGGGTGCTTTGTCTGCATGTGTTCCTGGTGC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTATTTTGTGAGTATGGGTGCTTTGTCTGCATGTGTTCCTGGTGC  1144

seq1  CTGTGGAAGCCAGACGAAATCATTGAATTC  1176
      ||||||||||||||||||||||||||||||
seq2  CTGTGGAAGCCAGACGAAATCATTGAATTC  1174

seq1: chr4_128561011_128561998
seq2: B6Ng01-116A04.g_68_1046

seq1  GAATTCCCCATCCCCAGCTCGACCCCCTCTCAAAGCTTTTCGGGTCCCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCATCCCCAGCTCGACCCCCTCTCAAAGCTTTTCGGGTCCCGG  50

seq1  GATTCCGCCCCTCTTCGGGATCTCCTCCTCGCAGCATCTATCCCTTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCGCCCCTCTTCGGGATCTCCTCCTCGCAGCATCTATCCCTTGGGA  100

seq1  GTGTCTGGTCCTCTAGATCCTCCTCGCCTGGAGCCCCTTCCTTGGGACGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGTCCTCTAGATCCTCCTCGCCTGGAGCCCCTTCCTTGGGACGC  150

seq1  CCTCGGCCTCTCTCCTCCAGCGCCCATCGCTGGTGGCCACCTAGGACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGCCTCTCTCCTCCAGCGCCCATCGCTGGTGGCCACCTAGGACCTC  200

seq1  GAAACCGAGCTCCGGTGCTCGCATCCCGGGTGGCACCCACTCGGCACCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCGAGCTCCGGTGCTCGCATCCCGGGTGGCACCCACTCGGCACCGA  250

seq1  GCCCTCGCGCCTCCGGCGTCGCAGACAGCTCCCCCCGCGCTCCCCGGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCGCGCCTCCGGCGTCGCAGACAGCTCCCCCCGCGCTCCCCGGCGC  300

seq1  CTGTCGCCCGTGCCCCCGTGGGCCTGGCCCCCGGGTACCGCCCCCAATCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGCCCGTGCCCCCGTGGGCCTGGCCCCCGGGTACCGCCCCCAATCG  350

seq1  CGCCGCGCCGGCCGCCGGCCTCCCGGGCTCCGCTTCGCGCCGCCCCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCGCCGGCCGCCGGCCTCCCGGGCTCCGCTTCGCGCCGCCCCTGGC  400

seq1  GCCATGGCGTGCAGCCTCAAGGACGAGCTGCTGTGCTCCATCTGCCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCGTGCAGCCTCAAGGACGAGCTGCTGTGCTCCATCTGCCTGAG  450

seq1  CATCTACCAGGACCCGGTGAGCCTGGGCTGCGAGCACTACTTCTGCCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACCAGGACCCGGTGAGCCTGGGCTGCGAGCACTACTTCTGCCGCC  500

seq1  GCTGCATCACCGAGCACTGGGTGCGGCAGGAGGCTCAGGGCGCCCGCGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCACCGAGCACTGGGTGCGGCAGGAGGCTCAGGGCGCCCGCGAC  550

seq1  TGCCCGGAGTGCCGGCGCACGTTCGCCGAGCCCGCGCTCGCGCCCAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGGAGTGCCGGCGCACGTTCGCCGAGCCCGCGCTCGCGCCCAGCCT  600

seq1  CAAGCTGGCCAACATCGTGGAGCGCTACAGCGCCTTCCCGCTGGACGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGCCAACATCGTGGAGCGCTACAGCGCCTTCCCGCTGGACGCCA  650

seq1  TCCTCAACGCGCGCCGAGCCGCGCGACCCTGCCAGGCTCACGACAAGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACGCGCGCCGAGCCGCGCGACCCTGCCAGGCTCACGACAAGGTC  700

seq1  AAGCTCTTCTGCCTCACGGACCGCGCACTGCTCTGCTTCTTCTGTGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTTCTGCCTCACGGACCGCGCACTGCTCTGCTTCTTCTGTGATGA  750

seq1  GCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCGCTGCACGAGCAACACCAGGTCACTGGCATCGACGATGCCTTCG  800

seq1  AGGAGTTGCAGGTGCGAGGCGGACAGGCGGGGCTGTAGGTGGGGTCAGGG  850
      |||||||||| ||||||||||||||||||||||||||| |||||||| ||
seq2  AGGAGTTGCA-GTGCGAGGCGGACAGGCGGGGCTGTAGTTGGGGTCA-GG  848

seq1  TTCCAATAGGGGCAAGGGCCACAGGCCGGCTTAATGCCAAAGGGGCGTGG  900
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  TTCCAATAGGGGCAAGGG-CACA-GCCGGCTTAATGCCAAAGGGGCGTGG  896

seq1  CTCCTGTGAGGGGCGGGGCAGGGGCGGGTCCCTTGAGCATCACTGTGTCA  950
      || |||||||||   ||||| |||||||| |||||| |||||||||||| 
seq2  CTTCTGTGAGGG--CGGGCA-GGGCGGGT-CCTTGATCATCACTGTGTC-  941

seq1  AATGGGCTTGAGAGAGATCTGGATGGGAGACAGGTCGA  988
      ||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCTTGAGAGAGATCTGGATGGGAGACAGGTCGA  979