BAC Information

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BAC

Clone NameB6Ng01-116A06
Chromosome4 (Build37)
Map Location 140,249,496 - 140,399,320
singlet/doubletdoublet
Overlap geneRcc2, Padi6, Padi4, Padi3, Padi1
Upstream genePax7, Gm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l
Downstream genePadi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116A06.bB6Ng01-116A06.g
ACCDH921125DH921126
length614855
definitionDH921125|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A06, 5' end.DH921126|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,398,707 - 140,399,320)(140,249,496 - 140,250,352)
sequence
gaattctcctgcccagaggcagtggcagtgggaaaggtaccttgaatgga
caagccagtgggacttccaggagcctgaggctcccccaggggctgggtta
gagccaggccacacatgatggtgtgatgaacttggggctcctccacccct
ttgcttggtgactggctccagtggaggccaaggggctcaaaactggtctt
gcttgctgataagcctggggaagatccccccaagtatgaggtatgctggt
catctgagctgcccagagtttgaacctccagatgatagtgtataaggtga
catcagaggaaatgattaatctccccagaggccacatggcctggcaattt
gaaaaaatgtttgtatgtggggttaattgtgtgccatgaggtaactagtc
tcaacaggggctgtaggccgtcctacagccacagggctagcttaatgcct
ctctcctggtgggtcatctcaccacatcaactcccatccccaataggctg
cctgcttcagcaccctgaccccttcaggccgttgggctactttcagcaaa
gtgaaataagatgttcggggatttagggcaaggagtatggcggaacagtg
gggggaggggtggg
gaattctttcttggcattaaaaggcccagagtggtggcacaggggaacta
ctattgagtttccccatttggaaacctccttccaagccaagcaggtctgt
tatctgtgaaagaaaagaaacaactttactccgataggaaggaagtcctg
tctggagatccggcctgtggactaggaggtggctggctgagaaacacaca
cacacacacacacacacacacacactgctacctctagagctgctgctgtg
ggagttttggagtattgatgaaggccttagagttcacagatgtctaaggc
agaggcagagaatctgcaactcccaagagctccaaacttttttatttttt
tcttttggtttttcgagacagggttgctctgtgtagccctggctgtcctg
gaactcactctgtagaccaggctggctcgaactcagaaatccccctgcct
cccaagtgctgagattaaaggcatgcgccaccactgcctgacttttgtga
aaatctaccagcctctgcccttgagtgctggattaaaggaatatgccccg
ggccaggcttcaattcttccgtcttacagcctggggggaattgaattcaa
ttcctaattctcccaattgctgggattactgctgcataaccaaaaagcaa
aacaacaacaacaaaaactgagggaaggttattttgtttgagacagggtt
tttcagactgactgctcttccgaaggtcctgagttcaaatctcaacaacc
acatggtggctcacaaccaccggtaatgagatctgacgccctcttctggt
gtgcctgagacagctacagtgtacttacatatataaataaatctttcaaa
aaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_140398707_140399320
seq2: B6Ng01-116A06.b_45_658 (reverse)

seq1  CCCACCCCTCCCCCCACTGTTCCGCCATACTCCTTGCCCTAAATCCCCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCTCCCCCCACTGTTCCGCCATACTCCTTGCCCTAAATCCCCGA  50

seq1  ACATCTTATTTCACTTTGCTGAAAGTAGCCCAACGGCCTGAAGGGGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTATTTCACTTTGCTGAAAGTAGCCCAACGGCCTGAAGGGGTCAG  100

seq1  GGTGCTGAAGCAGGCAGCCTATTGGGGATGGGAGTTGATGTGGTGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGAAGCAGGCAGCCTATTGGGGATGGGAGTTGATGTGGTGAGATG  150

seq1  ACCCACCAGGAGAGAGGCATTAAGCTAGCCCTGTGGCTGTAGGACGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCAGGAGAGAGGCATTAAGCTAGCCCTGTGGCTGTAGGACGGCCT  200

seq1  ACAGCCCCTGTTGAGACTAGTTACCTCATGGCACACAATTAACCCCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCCTGTTGAGACTAGTTACCTCATGGCACACAATTAACCCCACAT  250

seq1  ACAAACATTTTTTCAAATTGCCAGGCCATGTGGCCTCTGGGGAGATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACATTTTTTCAAATTGCCAGGCCATGTGGCCTCTGGGGAGATTAAT  300

seq1  CATTTCCTCTGATGTCACCTTATACACTATCATCTGGAGGTTCAAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTCTGATGTCACCTTATACACTATCATCTGGAGGTTCAAACTCT  350

seq1  GGGCAGCTCAGATGACCAGCATACCTCATACTTGGGGGGATCTTCCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTCAGATGACCAGCATACCTCATACTTGGGGGGATCTTCCCCAG  400

seq1  GCTTATCAGCAAGCAAGACCAGTTTTGAGCCCCTTGGCCTCCACTGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCAGCAAGCAAGACCAGTTTTGAGCCCCTTGGCCTCCACTGGAGC  450

seq1  CAGTCACCAAGCAAAGGGGTGGAGGAGCCCCAAGTTCATCACACCATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACCAAGCAAAGGGGTGGAGGAGCCCCAAGTTCATCACACCATCAT  500

seq1  GTGTGGCCTGGCTCTAACCCAGCCCCTGGGGGAGCCTCAGGCTCCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCCTGGCTCTAACCCAGCCCCTGGGGGAGCCTCAGGCTCCTGGAA  550

seq1  GTCCCACTGGCTTGTCCATTCAAGGTACCTTTCCCACTGCCACTGCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACTGGCTTGTCCATTCAAGGTACCTTTCCCACTGCCACTGCCTCT  600

seq1  GGGCAGGAGAATTC  614
      ||||||||||||||
seq2  GGGCAGGAGAATTC  614

seq1: chr4_140249496_140250352
seq2: B6Ng01-116A06.g_68_922

seq1  GAATTCTTTCTTGGCATTAAAAGGCCCAGAGTGGTGGCACAGGGGAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTGGCATTAAAAGGCCCAGAGTGGTGGCACAGGGGAACTA  50

seq1  CTATTGAGTTTCCCCATTTGGAAACCTCCTTCCAAGCCAAGCAGGTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAGTTTCCCCATTTGGAAACCTCCTTCCAAGCCAAGCAGGTCTGT  100

seq1  TATCTGTGAAAGAAAAGAAACAACTTTACTCCGATAGGAAGGAAGTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGAAAGAAAAGAAACAACTTTACTCCGATAGGAAGGAAGTCCTG  150

seq1  TCTGGAGATCCGGCCTGTGGACTAGGAGGTGGCTGGCTGAGAAACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGATCCGGCCTGTGGACTAGGAGGTGGCTGGCTGAGAAACACACA  200

seq1  CACACACACACACACACACACACACTGCTACCTCTAGAGCTGCTGCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACTGCTACCTCTAGAGCTGCTGCTGTG  250

seq1  GGAGTTTTGGAGTATTGATGAAGGCCTTAGAGTTCACAGATGTCTAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTGGAGTATTGATGAAGGCCTTAGAGTTCACAGATGTCTAAGGC  300

seq1  AGAGGCAGAGAATCTGCAACTCCCAAGAGCTCCAAACTTTTTTATTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAGAATCTGCAACTCCCAAGAGCTCCAAACTTTTTTATTTTTT  350

seq1  TCTTTTGGTTTTTCGAGACAGGGTTGCTCTGTGTAGCCCTGGCTGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGTTTTTCGAGACAGGGTTGCTCTGTGTAGCCCTGGCTGTCCTG  400

seq1  GAACTCACTCTGTAGACCAGGCTGGCTCGAACTCAGAAATCCCCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGCTCGAACTCAGAAATCCCCCTGCCT  450

seq1  CCCAAGTGCTGAGATTAAAGGCATGCGCCACCACTGCCTGACTTTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTGCTGAGATTAAAGGCATGCGCCACCACTGCCTGACTTTTGTGA  500

seq1  AAATCTACCAGCCTCTGCCCTTGAGTGCTGGATTAAAGGAATATGCCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACCAGCCTCTGCCCTTGAGTGCTGGATTAAAGGAATATGCCCCG  550

seq1  GGCCAGGCTTCAATTCTTCCGTCTTACAGCCTGGGGGGAATTGAATTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCTTCAATTCTTCCGTCTTACAGCCTGGGGGGAATTGAATTCAA  600

seq1  TTCCTAATTCTCCCAATTGCTGGGATTACTGCTGCATAACCAAAAAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATTCTCCCAATTGCTGGGATTACTGCTGCATAACCAAAAAGCAA  650

seq1  AACAACAACAACAAAAACTGAGGGAAGGTTATTTTGTTTGAGACAGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAAAAACTGAGGGAAGGTTATTTTGTTTGAGACAGGGTT  700

seq1  TTTCAGACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCTCAACAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCTCAACAACC  750

seq1  ACATGGTGGCTCACAACCACCGGTAATGAGATCTGACGCCCTCTTCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGGCTCACAACCACCGGTAATGAGATCTGACGCCCTCTTCTGGT  800

seq1  GTGCCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATCTTTCA  850
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGCCTG-AGACAGCTACAGTGTACTTACATAT-ATAAATAAATCTTTCA  848

seq1  AAAAAAA  857
      |||||||
seq2  AAAAAAA  855