BAC Information

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BAC

Clone NameB6Ng01-116E09
Chromosome4 (Build37)
Map Location 129,843,916 - 129,997,360
singlet/doubletdoublet
Overlap geneTinagl, Gm853, Serinc2, Fabp3, Zcchc17
Upstream geneS100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1
Downstream geneWdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116E09.bB6Ng01-116E09.g
ACCDH921312DH921313
length645861
definitionDH921312|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E09, 5' end.DH921313|Mus musculus domesticus DNA, BAC clone: B6Ng01-116E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,843,916 - 129,844,560)(129,996,502 - 129,997,360)
sequence
gaattctcaaattcaagggggcagtttcactgttcccagacacccttcaa
agctcctcacggtccccgcacccctgcaagcagcccctcctctctgtgtc
tgtttcctttttggcaatgggaggagggaggagcagcctcagtttggcag
agaacacaaagaatttcagagaattcccagagtaaatgccactgctccta
gtcccatgtgccctcaggaacctcactcacccagtgatcttgactgagtg
agtcccatgtctgcggtactgctccggcctcccctggcttacaggtgtgt
ggctgtagatgccacgctggtacaagaagaagtcctcgtgtacttccatg
agtgctgtgggcagagacaaagacagggcttggcctgctattctgagcat
ccagacaccagagcctcatattagacattgatttaagtaggagcttcctg
caaagaaagggtaacggaccctccactcctcttacaactgcatctggtac
ctaaagttggagagatttcttaggccctgcgcccagcctccagcaagaag
tttctggaaccagagaaagcctggggatggttaccttgaacagggccgtt
ttccattagctccttcatgatctccttctcctggggggggggggg
gaattccaggacagccagggctgcacagagaaagaaccctgtcttgggga
gaggtgttagtttgagttgctgtctatgaagatgagaaggagacgtggac
gaggttgagtctgtgagaagggatgggcaaggagttgaggtgcctgttac
acaccctaaggagactgtgggatagacatttgattcacattagggttcag
gggagaagctaaagtaaaagacagaaatgtagacgtcatccgtgtatcaa
ttcacttggcgtcccagagatgacctgaaggtaagttagtaggggcgggg
cgtgtgaggctggatggggagtgcccatcttggctgatagatggaggaag
tgagatctaagaactggccattagagggtgcaccagtaatcacagcggaa
ctgcggggctggcttcaagtgtgaggctagcctgagctacatcttgagtg
ccaggctagccagggcaaatagtgagactgtttgaaaaaacaaaagcaga
gctaagccctgtgggatactctcacacaaggtagagaagccatgtgcttc
ttgtttgcctctgtccgagggttgggctgtcagctcatttaccttcccag
gactgccctgcctaagaagggacagagcctcaccaggctctcaagcccac
agcatcagtgataagctgccaaattgaaaccaaatcatggatttatcacc
tttcagtcacatggatgtaccccctagccacagttgctagaacttgggaa
cgcaggtctgggaggcatttttttttttaactctctactttttttgaaga
aatctttaacttgttggctctacttatttgttgagactgtgaggagaacc
ttttgaaaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129843916_129844560
seq2: B6Ng01-116E09.b_45_689

seq1  GAATTCTCAAATTCAAGGGGGCAGTTTCACTGTTCCCAGACACCCTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATTCAAGGGGGCAGTTTCACTGTTCCCAGACACCCTTCAA  50

seq1  AGCTCCTCACGGTCCCCGCACCCCTGCAAGCAGCCCCTCCTCTCTGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCACGGTCCCCGCACCCCTGCAAGCAGCCCCTCCTCTCTGTGTC  100

seq1  TGTTTCCTTTTTGGCAATGGGAGGAGGGAGGAGCAGCCTCAGTTTGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTTTTTGGCAATGGGAGGAGGGAGGAGCAGCCTCAGTTTGGCAG  150

seq1  AGAACACAAAGAATTTCAGAGAATTCCCAGAGTAAATGCCACTGCTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAAAGAATTTCAGAGAATTCCCAGAGTAAATGCCACTGCTCCTA  200

seq1  GTCCCATGTGCCCTCAGGAACCTCACTCACCCAGTGATCTTGACTGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGTGCCCTCAGGAACCTCACTCACCCAGTGATCTTGACTGAGTG  250

seq1  AGTCCCATGTCTGCGGTACTGCTCCGGCCTCCCCTGGCTTACAGGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCATGTCTGCGGTACTGCTCCGGCCTCCCCTGGCTTACAGGTGTGT  300

seq1  GGCTGTAGATGCCACGCTGGTACAAGAAGAAGTCCTCGTGTACTTCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAGATGCCACGCTGGTACAAGAAGAAGTCCTCGTGTACTTCCATG  350

seq1  AGTGCTGTGGGCAGAGACAAAGACAGGGCTTGGCCTGCTATTCTGAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTGGGCAGAGACAAAGACAGGGCTTGGCCTGCTATTCTGAGCAT  400

seq1  CCAGACACCAGAGCCTCATATTAGACATTGATTTAAGTAGGAGCTTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACCAGAGCCTCATATTAGACATTGATTTAAGTAGGAGCTTCCTG  450

seq1  CAAAGAAAGGGTAACGGACCCTCCACTCCTCTTACAACTGCATCTGGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAGGGTAACGGACCCTCCACTCCTCTTACAACTGCATCTGGTAC  500

seq1  CTAAAGTTGGAGAGATTTCTTAGGCCCTGCGCCCAGCCTCCAGCAAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTTGGAGAGATTTCTTAGGCCCTGCGCCCAGCCTCCAGCAAGAAG  550

seq1  TTTCTGGAACCAGAGAAAGCCTGGGGATGGTTACCTTGAACAGGGCCGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAACCAGAGAAAGCCTGGGGATGGTTACCTTGAACAGGGCCGTT  600

seq1  TTCCATTAGCTCCTTCATGATCTCCTTCTCCTGGGGGGGGGGGGG  645
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTAGCTCCTTCATGATCTCCTTCTCCTGGGGGGGGGGGGG  645

seq1: chr4_129996502_129997360
seq2: B6Ng01-116E09.g_68_928 (reverse)

seq1  GCTTTTCAAATGG-TCTCCTCACAGTCTCAGCAAATAAGTAGAGCCAACA  49
      |||||||||| || |||||||||||||||| |||||||||||||||||||
seq2  GCTTTTCAAAAGGTTCTCCTCACAGTCTCAACAAATAAGTAGAGCCAACA  50

seq1  AGTTAAAGATTTCTTC-AAAAAAGTAGAGAGTTAAAAAAAAAAATGCCTT  98
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  AGTTAAAGATTTCTTCAAAAAAAGTAGAGAGTTAAAAAAAAAAATGCCTC  100

seq1  CCAGACCTGCGTTCCCAAGTTCTAGCAACTGTGGCTAGGGGGTACATCCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTGCGTTCCCAAGTTCTAGCAACTGTGGCTAGGGGGTACATCCA  150

seq1  TGTGACTGAAAGGTGATAAATCCATGATTTGGTTTCAATTTGGCAGCTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGAAAGGTGATAAATCCATGATTTGGTTTCAATTTGGCAGCTTA  200

seq1  TCACTGATGCTGTGGGCTTGAGAGCCTGGTGAGGCTCTGTCCCTTCTTAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATGCTGTGGGCTTGAGAGCCTGGTGAGGCTCTGTCCCTTCTTAG  250

seq1  GCAGGGCAGTCCTGGGAAGGTAAATGAGCTGACAGCCCAACCCTCGGACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCAGTCCTGGGAAGGTAAATGAGCTGACAGCCCAACCCTCGGACA  300

seq1  GAGGCAAACAAGAAGCACATGGCTTCTCTACCTTGTGTGAGAGTATCCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAACAAGAAGCACATGGCTTCTCTACCTTGTGTGAGAGTATCCCA  350

seq1  CAGGGCTTAGCTCTGCTTTTGTTTTTTCAAACAGTCTCACTATTTGCCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTAGCTCTGCTTTTGTTTTTTCAAACAGTCTCACTATTTGCCCT  400

seq1  GGCTAGCCTGGCACTCAAGATGTAGCTCAGGCTAGCCTCACACTTGAAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCCTGGCACTCAAGATGTAGCTCAGGCTAGCCTCACACTTGAAGC  450

seq1  CAGCCCCGCAGTTCCGCTGTGATTACTGGTGCACCCTCTAATGGCCAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCGCAGTTCCGCTGTGATTACTGGTGCACCCTCTAATGGCCAGTT  500

seq1  CTTAGATCTCACTTCCTCCATCTATCAGCCAAGATGGGCACTCCCCATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATCTCACTTCCTCCATCTATCAGCCAAGATGGGCACTCCCCATCC  550

seq1  AGCCTCACACGCCCCGCCCCTACTAACTTACCTTCAGGTCATCTCTGGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCACACGCCCCGCCCCTACTAACTTACCTTCAGGTCATCTCTGGGA  600

seq1  CGCCAAGTGAATTGATACACGGATGACGTCTACATTTCTGTCTTTTACTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAAGTGAATTGATACACGGATGACGTCTACATTTCTGTCTTTTACTT  650

seq1  TAGCTTCTCCCCTGAACCCTAATGTGAATCAAATGTCTATCCCACAGTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCTCCCCTGAACCCTAATGTGAATCAAATGTCTATCCCACAGTCT  700

seq1  CCTTAGGGTGTGTAACAGGCACCTCAACTCCTTGCCCATCCCTTCTCACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGGTGTGTAACAGGCACCTCAACTCCTTGCCCATCCCTTCTCACA  750

seq1  GACTCAACCTCGTCCACGTCTCCTTCTCATCTTCATAGACAGCAACTCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAACCTCGTCCACGTCTCCTTCTCATCTTCATAGACAGCAACTCAA  800

seq1  ACTAACACCTCTCCCCAAGACAGGGTTCTTTCTCTGTGCAGCCCTGGCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACACCTCTCCCCAAGACAGGGTTCTTTCTCTGTGCAGCCCTGGCTG  850

seq1  TCCTGGAATTC  859
      |||||||||||
seq2  TCCTGGAATTC  861