BAC Information

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BAC

Clone NameB6Ng01-116I11
Chromosome4 (Build37)4 (Build37)
Map Location 146,092,977 - 146,094,007145,750,741 - 145,751,636
singlet/doubletsingletsinglet
Overlap geneMGC117846
Upstream geneLOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445
Downstream geneOTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116I11.bB6Ng01-116I11.g
ACCDH921503DH921504
length1,153946
definitionDH921503|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I11, 5' end.DH921504|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,092,977 - 146,094,007)(145,750,741 - 145,751,636)
sequence
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgc
ttttcccgaaaattccatcttggtattcatcagagaattcatacaggaga
gaatccttataaatgtagtgaatgtaacaaatgctttacccaaaattcct
atcttaatattcatcagagaattcatgcaggagagaaaccttacaaatgc
agtgaatgtgacaaatgctttactgaaaaaggcagtctgacaattcatca
gagaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaat
gcttttcccgaaaattccatcttggtattcatcagagaattcatacaaga
gagaaacctcacaaatgtagtgaatgtgacaaatgctttacccagaaatc
ccatcttagtattcatcagaaaattcatacaagagagaaaccttacaaat
agattgtatgtgacaaatacaatactcacaatgtcagtctgagaaatcat
cagttatttcatgcagtagagaatctttataaatgaagtgaacgagacaa
tcctttaccaagatatatcatctcaaaattcattagagaatacttagaga
agacaaacttttcaaatatattgtaggtatgaatcctttccttttggcct
agttcctagaatataacagtgaatatacttacaggctagaaacttaactc
atgcattgtatgaagaaatagctttgacttcatttcaggtcagagagaac
atctaagaactttttagggtaaagtatttctgttaggggaaaatgttgta
ttcttgacaacacttgaggctccacactaggagaattagtatgattatga
aaatcttgtcaaaacttttcatgcaatgttcaaatcttagataatgttaa
ctattttgtgttgggagaaactcttgaaaatgtgaaaatgtagaaagctt
ttcatgacacctttttacttgttcacccttcaaacgttataagatggaga
tagtttaggaagtcggaatatagtattgataacactttcattgagacaga
aataatccatttcaagggaaccatttaaggtcttatacaccctcaaatag
ggtataaaactggtagcattttgatattttattgtccggaactaatcaat
aaa
gaattcatcccatatacagacaccaatcgcagacactattgtggatgaca
attagtgcttgctgacaggagcctgatatggctgtctcctgagaggctct
gccagtgcctaaaaaatacaaaggcagatgcttgcagccaaccaatggac
tgagcactgggtccatatggcagaagttagagaaaggactgaagaagctg
aaaagttttgcaaccctatagggagaacaacaatatcaaacaacaagaca
caccagagctcccaaggactaaatcaccaaccaacgagtacaaatggagc
aacccatgtccccagctacatatttaatagaggatggtcatgttgggcat
gcctgggaggagaggtcctaggtcctgtgtagacttgatggcccagtgta
cattaatgccagggaacggagacaggagtaggtgggggcatgtgggagga
ccctcatagaagcaggcgggaaataatagggggtttctggaggggaaccg
ggaaaggggataacatttgaaatataaataaataaaatatacaaaaaatt
agtcaccaagatatttaagtaaaatggaatattgaaagtgtcttaatcat
acaccaatagccaaggtcctcatttgtacccccccatcctcagtgtaccc
cctcttcctatctttgtaaatgggagcctcatgaacctaataagtcaagc
tatgccttgaatttgcccctttttacatctaaaatttctacatctacagt
ttttacatctaatttctacatttttttacatctaaaatttccttagtaca
attataaaattttacaacttcttctctgctgtccctggtttactatcact
tattagcgtcaaggatgaatccctataaaatatgtcctactttccctgaa
tcctctcagactctgagctgcattgtcaactcacacccctgcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146092977_146094007
seq2: B6Ng01-116I11.b_169_1195

seq1  ACAAATGCTTTACCAAACCATCCCATCTTAGTATTCATCAGAGAATTCAT  50
      |||||||||||||| ||   ||| |||||| |||||||||||||||||||
seq2  ACAAATGCTTTACCCAAAATTCCTATCTTAATATTCATCAGAGAATTCAT  50

seq1  ACAGGAGAGAAACCTTACAAATGCAGTGAATGTGAAAAATGCTTTAATGA  100
       |||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  GCAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACTGA  100

seq1  AAAAAACATTCTGAAAATTCATCAGAGAATTCATACAGGAGAGAGACCTT  150
      ||||  || ||||| ||||||||||||||||||||||||||||| |||||
seq2  AAAAGGCAGTCTGACAATTCATCAGAGAATTCATACAGGAGAGAAACCTT  150

seq1  ACAAATGTAGTGAATGTGACAAATGCTTTTCCCGAAAATTCCATCTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTAGTGAATGTGACAAATGCTTTTCCCGAAAATTCCATCTTGGT  200

seq1  ATTCATCAGAGAATTCATACAGGAAAGAAACCTTACAAATGTAGTGAATG  250
      ||||||||||||||||||||| || |||||||| ||||||||||||||||
seq2  ATTCATCAGAGAATTCATACAAGAGAGAAACCTCACAAATGTAGTGAATG  250

seq1  TGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAATTC  300

seq1  ATACAGGAGAGAAACCTTACAAATAGAATGTATGTGACAAATACAATACT  350
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATACAAGAGAGAAACCTTACAAATAGATTGTATGTGACAAATACAATACT  350

seq1  CACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATCT  400
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CACAATGTCAGTCTGAGAAATCATCAGTTATTTCATGCAGTAGAGAATCT  400

seq1  TTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCTCAA  450

seq1  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAG  500

seq1  GTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGA--AT  548
      ||||||||||||||||||||||||| |||||||| | |||||||||  ||
seq2  GTATGAATCCTTTCCTTTTGGCCTAGTTCCTAGAATATAACAGTGAATAT  550

seq1  ACTTACAGGCTATAAACTTAACTCATGCATTGTATGAAGAAATATCTTTG  598
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  ACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATAGCTTTG  600

seq1  ACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGTA  650

seq1  TTTCTGTT-GGGGAAAATGTTGTATTCTTGACAACACTTGAGGCTCCACA  697
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTAGGGGAAAATGTTGTATTCTTGACAACACTTGAGGCTCCACA  700

seq1  CTA-GAGAATTAGTATGATTATGAAAATCTTGTGAAAA-TATTCATGCAA  745
      ||| ||||||||||||||||||||||||||||| |||| | |||||||||
seq2  CTAGGAGAATTAGTATGATTATGAAAATCTTGTCAAAACTTTTCATGCAA  750

seq1  TGTTCAAATCTTAGATAATGTCAACTA-TTTATGTTGGGAGAAACTC-TA  793
      ||||||||||||||||||||| ||||| ||| ||||||||||||||| | 
seq2  TGTTCAAATCTTAGATAATGTTAACTATTTTGTGTTGGGAGAAACTCTTG  800

seq1  AAAATGTGAAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGAAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCAC  850

seq1  CC-TCAAACGTTATAAGATGAAGATAAGTTAGGAAGTCAGAAGATAGTAT  892
      || ||||||||||||||||| |||||  |||||||||| ||| |||||||
seq2  CCTTCAAACGTTATAAGATGGAGATAGTTTAGGAAGTCGGAATATAGTAT  900

seq1  TGTATAACACTTTCATTGAGACAGAAATAATCCATTTCAAAAGGAAACTA  942
      || |||||||||||||||||||||||||||||||||||  |||| ||| |
seq2  TG-ATAACACTTTCATTGAGACAGAAATAATCCATTTC--AAGGGAACCA  947

seq1  TTTAAGGTCTTTAATACAACCCTCAAAATAGGTAATAAAACTGGTAGCAT  992
      |||||||||||  |||| |||||| |||||||  ||||||||||||||||
seq2  TTTAAGGTCTT--ATAC-ACCCTC-AAATAGGGTATAAAACTGGTAGCAT  993

seq1  TTTGTATATTTTTATTGTCCTGTAACTAACTCCAATAAA  1031
      |||| ||| ||||||||||| | ||||||   |||||||
seq2  TTTG-ATA-TTTTATTGTCC-GGAACTAA--TCAATAAA  1027

seq1: chr4_145750741_145751636
seq2: B6Ng01-116I11.g_118_1015

seq1  CAATTAGTGCTTGCTGACAGGAGCCTGATATGGCTGTCTCCTGAGAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGTGCTTGCTGACAGGAGCCTGATATGGCTGTCTCCTGAGAGGCT  50

seq1  CTGCCAGTGCCTAAAAAATACAAAGGCAGATGCTTGCAGCCAACCAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTGCCTAAAAAATACAAAGGCAGATGCTTGCAGCCAACCAATGG  100

seq1  ACTGAGCACTGGGTCCATATGGCAGAAGTTAGAGAAAGGACTGAAGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCACTGGGTCCATATGGCAGAAGTTAGAGAAAGGACTGAAGAAGC  150

seq1  TGAAAAGTTTTGCAACCCTATAGGGAGAACAACAATATCAAACAACCAGA  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAAAAGTTTTGCAACCCTATAGGGAGAACAACAATATCAAACAACAAGA  200

seq1  CACACCAGAGCTCCCAAGGACTAAATCACCAACCAACGAGTACAAATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGAGCTCCCAAGGACTAAATCACCAACCAACGAGTACAAATGGA  250

seq1  GCAACCCATGTCCCCAGCTACATATTTAATAGAGGATGGTCATGTTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCATGTCCCCAGCTACATATTTAATAGAGGATGGTCATGTTGGGC  300

seq1  ATGCCTGGGAGGAGAGGTCCTAGGTCCTGTGTAGACTTGATGGCCCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGGAGGAGAGGTCCTAGGTCCTGTGTAGACTTGATGGCCCAGTG  350

seq1  TACATTAATGCCAGGGAACGGAGACAGGAGTAGGTGGGGGCATGTGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAATGCCAGGGAACGGAGACAGGAGTAGGTGGGGGCATGTGGGAG  400

seq1  GACCCTCATAGAAGCAGGCGGGAAATAATAGGGGGTTTCTGGAGGGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCATAGAAGCAGGCGGGAAATAATAGGGGGTTTCTGGAGGGGAAC  450

seq1  CGGGAAAGGGGATAACATTTGAAATATAAATAAATAAAATATACAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAAGGGGATAACATTTGAAATATAAATAAATAAAATATACAAAAAA  500

seq1  TTAGTCACCAAGACATTTAAGTAAAATGGAATATTGAAAGTGTCTTAATC  550
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACCAAGATATTTAAGTAAAATGGAATATTGAAAGTGTCTTAATC  550

seq1  ATACACCAATAGCCAAGGTCCTCATTTGTACCCCCCCATCCTCAGTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCAATAGCCAAGGTCCTCATTTGTACCCCCCCATCCTCAGTGTAC  600

seq1  CCCCTCTTCCTATCTTTGTAAATGGGAGCCTCATGAACCTAATAAGTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTCCTATCTTTGTAAATGGGAGCCTCATGAACCTAATAAGTCAA  650

seq1  GCTATGCCTTGAATTTGCCCCTTTTTACATCTAAAATTTCTACATCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCCTTGAATTTGCCCCTTTTTACATCTAAAATTTCTACATCTACA  700

seq1  GTTTTTACATCTAATTTCTACATTTTTTTACATATAAAATTTCCTTAGTA  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTTTACATCTAATTTCTACATTTTTTTACATCTAAAATTTCCTTAGTA  750

seq1  CAATTATAAAA-TTTACAACTTCTCTCT-TGCTGTCCAT-GCTTACTATC  797
      ||||||||||| |||||||||||| ||| |||||||| | | ||||||||
seq2  CAATTATAAAATTTTACAACTTCT-TCTCTGCTGTCCCTGGTTTACTATC  799

seq1  ACTTATTAGCGTCAAGGATGAAT-CCTATAAAAATATGTCCTACTTTCCC  846
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  ACTTATTAGCGTCAAGGATGAATCCCTAT-AAAATATGTCCTACTTTCCC  848

seq1  TGAATCCTCTCAGACTCTGAGCTGCATTGTTCAACCCACA-CCCTGCACT  895
      ||||||||||||||||||||||||||||| ||||| |||| |||||||||
seq2  TGAATCCTCTCAGACTCTGAGCTGCATTG-TCAACTCACACCCCTGCACT  897

seq1  G  896
      |
seq2  G  898