BAC Information

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BAC

Clone NameB6Ng01-116K05
Chromosome4 (Build37)1 (Build37)
Map Location 74,705,579 - 74,706,721140,181,126 - 140,182,131
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFrmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814
Downstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116K05.bB6Ng01-116K05.g
ACCDH921587DH921588
length1,130699
definitionDH921587|Mus musculus domesticus DNA, BAC clone: B6Ng01-116K05, 5' end.DH921588|Mus musculus domesticus DNA, BAC clone: B6Ng01-116K05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,705,579 - 74,706,721)(140,181,126 - 140,182,131)
sequence
gaattcacattgcaagttacacatgtaaaaacaaaacaagcaatcagaca
aaaaacaatgggataagactcgatctctcaaataaatgcttaaaaatcaa
gaggctgacttcgtgtttggattttgctaaaagtatagaacggccaatgt
ggatgaatatattcatcaaaattacttactatactggaaagataaagaaa
aaacttccttgtatataatcagcctaaaataatttttttgaccaacaaac
taatcctgatgaaaatacaacaagcagtattcaggatgaatatggaatca
gcattgctatacaaactcttagatttcttgctttctttattgatttcttt
ggttatatttcattagtcatcttaatttttattattcatttcggcaaatg
ggtttggattcaattcattctttgttagtgttatttttccatgcttttgt
ataacattttcttgaaaagagaatcacacaatatagttgaataaatattt
ccactctctcatctcctcccttatactagccaccagtatatttccaattc
tgtccctcctttctccctttctttagagaataaataagcaaaactattca
aacaaatttaataaaaaataaagttacctgattatatttttgttcttcat
aatctttctatcattttttgttttgagaggattttttatcaacagaaaaa
aaaatgtacctgaaagaaagaaggaaagagagatgggaggagaagtagga
gagagactgagtatcaaagtgatcagaataagaaattacaatctacattg
agaaaataagaaatattataaagaaatgattagaaaacttgtacttcact
aagttggaaaatgaaaaacaaatatatagagcagtcaaatcaccaagttt
aaaccaaaatgaagtcagcaacgtttaatgagaatgacctagtaatttaa
atatttccatctaaatatgttttaagccagatggattcacaacagaattc
taccaggatttcaagatttatagctaatatctttgaaaccattcaaagaa
taacaaaataatatcaataattataaacttctttaaaatagactaaaact
aagacagaaaaaaaaaagaaatcttacaaa
gaattctttctagctataaattaaaccatttgcctttatctaagtagaaa
tcttagggtatatgttggaggcagcatagaatgctatttctaatcatcac
taccactgaaaggttcacagcacattggcatagttctttaggtatatacc
aatattatttaaattttaaacttgtaatttcctatatgtatgccttttat
ttcctttttttttcctaagtgtggtccagtattgtattagatttgacaaa
tgaaaggggagaggaataagtgctttttccccccagaaatcacaaaaata
atgtttttaacttttacttttcggcatgacatctactatgtgatatatat
atatatatatacacatattcttttgaggtttaactgtctacaattaattt
gttcagagtttataatgacacaatggtaaattttatcaaattccttttct
tttagtctcaattatcatatatgtcttagtataatttattttggtggagt
gtataactatccttgcatctttcttttaagatgaattttatcacttgaat
tattcctttaataagttttgtatttgttttgttagtgtttcctttagagc
ttcagatttgtatctatcagtggtatttatgtatttatgtatagggtttt
tttcacatttggtgtgtccctgtgggcagtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_74705579_74706721
seq2: B6Ng01-116K05.b_43_1172

seq1  GAATTCACATTGCAAGTTACACATGTAAAAACAAAACAAGCAATCAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTGCAAGTTACACATGTAAAAACAAAACAAGCAATCAGACA  50

seq1  AAAAACAATGGGATAAGACTCGATCTCTCAAATAAATGCTTAAAAATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATGGGATAAGACTCGATCTCTCAAATAAATGCTTAAAAATCAA  100

seq1  GAGGCTGACTTCGTGTTTGGATTTTGCTAAAAGTATAGAACGGCCAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGACTTCGTGTTTGGATTTTGCTAAAAGTATAGAACGGCCAATGT  150

seq1  GGATGAATATATTCATCAAAATTACTTACTATACTGGAAAGATAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAATATATTCATCAAAATTACTTACTATACTGGAAAGATAAAGAAA  200

seq1  AAACTTCCTTGTATATAATCAGCCTAAAATAATTTTTTTGACCAACAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCCTTGTATATAATCAGCCTAAAATAATTTTTTTGACCAACAAAC  250

seq1  TAATCCTGATGAAAATACAACAAGCAGTATTCAGGATGAATATGGAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTGATGAAAATACAACAAGCAGTATTCAGGATGAATATGGAATCA  300

seq1  GCATTGCTATACAAACTCTTAGATTTCTTGCTTTCTTTATTGATTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCTATACAAACTCTTAGATTTCTTGCTTTCTTTATTGATTTCTTT  350

seq1  GGTTATATTTCATTAGTCATCTTAATTTTTATTATTCATTTCGGCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATATTTCATTAGTCATCTTAATTTTTATTATTCATTTCGGCAAATG  400

seq1  GGTTTGGATTCAATTCATTCTTTGTTAGTGTTATTTTTCCATGCTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGATTCAATTCATTCTTTGTTAGTGTTATTTTTCCATGCTTTTGT  450

seq1  ATAACATTTTCTTGAAAAGAGAATCACACAATATAGTTGAATAAATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTTTCTTGAAAAGAGAATCACACAATATAGTTGAATAAATATTT  500

seq1  CCACTCTCTCATCTCCTCCCTTATACTAGCCACCAGTATATTTCCAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCTCATCTCCTCCCTTATACTAGCCACCAGTATATTTCCAATTC  550

seq1  TGTCCCTCCTTTCTCCCTTTCTTTAGAGAATAAATAAGCAAAACTATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCCTTTCTCCCTTTCTTTAGAGAATAAATAAGCAAAACTATTCA  600

seq1  AACAAATTTAATAAAAAATAAAGTTACCTGATTATATTTTTGTTCTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTTAATAAAAAATAAAGTTACCTGATTATATTTTTGTTCTTCAT  650

seq1  AATCTTTCTATCATTTTTTGTTTTGAGAGGATTTTTTATCAACAGAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCTATCATTTTTTGTTTTGAGAGGATTTTTTATCAACAGAAAAA  700

seq1  AAAATGTACCTGAAAGAAAGAAGGAAAGAGAGATGGGAGGAGAAGTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTACCTGAAAGAAAGAAGGAAAGAGAGATGGGAGGAGAAGTAGGA  750

seq1  GAGAGACTGAGTATCAAAGTGATCAGAATAAGAAATTACAATCTACATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTGAGTATCAAAGTGATCAGAATAAGAAATTACAATCTACATTG  800

seq1  AGAAAATAAGAAATATTATAAAGAAATGATTAGAAAACTTGTACTTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAGAAATATTATAAAGAAATGATTAGAAAACTTGTACTTCACT  850

seq1  AAGTTGGAAAATGAAAAACAAATATATAGAGCAGTCAAATCACCAAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGAAAATGAAAAACAAATATATAGAGCAGTCAAATCACCAAGTTT  900

seq1  AAACCAAAATGAAGTCAGCAACGTTTAAGGAGAATGACCTAGTAATTTAA  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAACCAAAATGAAGTCAGCAACGTTTAATGAGAATGACCTAGTAATTTAA  950

seq1  ATATTTTCCATCTAAAATATGTTTTAAGGCCAGATGGATTCACAACAGAA  1000
      ||| ||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  ATA-TTTCCATCT-AAATATGTTTTAA-GCCAGATGGATTCACAACAGAA  997

seq1  TTCTACCAGGATTTCAAAGATTTATAGCTAATATCTTTGAAACCATTCAA  1050
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCTACCAGGATTTC-AAGATTTATAGCTAATATCTTTGAAACCATTCAA  1046

seq1  AGAATAACAAAATAAATAATCAAATAAATTATAAAACTCCTTTAAAATAG  1100
      |||||||||||||||   |||||   |||||| ||||| |||||||||||
seq2  AGAATAACAAAATAA--TATCAA--TAATTAT-AAACTTCTTTAAAATAG  1091

seq1  ACTACAACCTAGGACCAGAAAAAAAAAAAGAAATCTTTACAAA  1143
      |||| || ||| || ||| |||||||||||||||| |||||||
seq2  ACTA-AAACTAAGA-CAG-AAAAAAAAAAGAAATC-TTACAAA  1130

seq1: chr1_140181126_140182131
seq2: B6Ng01-116K05.g_396_767 (reverse)

seq1  CACACACACACACACACACACTACATATATGTATATA-TATGTGTGTGTG  49
      |||||||||||||||||||||| |  | | | | | |  |  ||||    
seq2  CACACACACACACACACACACTGCCCACAGGGACACACCAAATGTG----  46

seq1  TGTATATATATATGC-ATATATAAATAACAAAATA-AAATAATAAATAAA  97
           | | | |  | ||| |||||||   |||||  | | ||| ||| |
seq2  -----AAAAAAACCCTATACATAAATACATAAATACCACTGATAGATACA  91

seq1  AAT---AAGAGC---ATGATATTTTCAGAAAGGACATCATGCCATATTGC  141
      |||   |||  |   | || |   | | |||  |||  || | | | |  
seq2  AATCTGAAGCTCTAAAGGAAACACTAACAAA--ACA-AATACAAAACTTA  138

seq1  TAACAGGTTTAGAAGAAAGCATTAAGTTCTATTTTTAAAGCTAAGTTGTG  191
      | | |||  ||    ||   || || ||| || || ||||  ||| ||  
seq2  TTAAAGGAATAATTCAAGTGATAAAATTC-ATCTTAAAAG-AAAGATGCA  186

seq1  TGACCTATTTTTGCA--CCATTAAAATAATAAATATAATGCTATTCAGAA  239
       |   || || | ||  |||  |||||||     || || |||   ||| 
seq2  AG-GATAGTTATACACTCCACCAAAATAA-----ATTATACTA---AGAC  227

seq1  ACCTGTCATTGCAAAACAAAACACAAGAGTTTAGGCATCTTCATTTATCC  289
      |  | | ||    ||   | ||  || ||   ||| || || ||  |   
seq2  ATATATGAT----AATTGAGAC-TAAAAGAAAAGGAAT-TTGATAAA---  268

seq1  ATTTACAACTTTTATTTTAAGAAATACATGAAGATCTCATGGATATTCAG  339
      |||||| | || | |  | | |||  | ||||          | |||   
seq2  ATTTACCA-TTGTGTCATTATAAACTC-TGAA---------CAAATT---  304

seq1  AACCTGGACCCAATTGTAAAAAGAAAAAAAAAGTTTCTCAGTAAGTTCTT  389
                 ||||||| | ||  |||        ||||          
seq2  -----------AATTGTAGACAGTTAAA-------CCTCA----------  326

seq1  TGTTCAAATAATTGTCCCTGTTAAAATAGGAACAATTATAGCTTAGTAGT  439
           ||| |||      |||  | |||   | |  |||| |  | ||||
seq2  -----AAAGAAT-----ATGTGTATATATATATATATATATCACA-TAGT  365

seq1  AGAGTGTTTGCCCAGCAAGTGTTAGACTCTGAGTTCAATTCTGAGCATAC  489
      ||| |||                                           
seq2  AGA-TGTC------------------------------------------  372

seq1  ATGCATGCATGCACACACACACACTCTTTAGGATATAGTGGAAAAATCAG  539
                                                        
seq2  --------------------------------------------------  372

seq1  AAAAATAAGTTCTTTTTGTGAGTGTTTAGAAACCAACATCCTAAACTCTT  589
                                                        
seq2  --------------------------------------------------  372

seq1  ATCCATGCATGTGGGCACAGCCCTCATGACTGGTGCTTATATTTTCTGCT  639
                                                        
seq2  --------------------------------------------------  372

seq1  TTTCTGAACCTACTCTTGTCTTCCTAAGGAGAAACAGTATCTTGCTTCCA  689
                                                        
seq2  --------------------------------------------------  372

seq1  TGGCCCCTTCACTCACTGTATTCCTAGGCTGCACAGCCCTCTTGTATTTA  739
                                                        
seq2  --------------------------------------------------  372

seq1  GACAAGCTCATCTTTCTTTATCTATGTTCAACAGTTAGCTTTCCCTCCTG  789
                                                        
seq2  --------------------------------------------------  372

seq1  ACCACCTTATTTAAAGTGACCTCTCTAAAAACAACAAAGGAAAATAATAT  839
                                                        
seq2  --------------------------------------------------  372

seq1  GGTCTTTAATTTTTCTCCATAGCATTTATCACTGTATGACATACTGTATA  889
                                                        
seq2  --------------------------------------------------  372

seq1  TTTGCATTTATTGCAGCTGTACACCATTGCAGACTTATAATTCTAGAAAC  939
                                                        
seq2  --------------------------------------------------  372

seq1  TACGGGTTCTTTGTTGTGTTCCCTGTTGTTTCCCTAAATTTCCTACCACT  989
                                                        
seq2  --------------------------------------------------  372

seq1  TCTCCATAGTAGATGTC  1006
                       
seq2  -----------------  372