BAC Information

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BAC

Clone NameB6Ng01-116K09
Chromosome4 (Build37)
Map Location 129,423,132 - 129,584,162
singlet/doubletdoublet
Overlap geneLOC100040532, Ptp4a2, LOC622469
Upstream genePhc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1
Downstream geneLOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl, Gm853, Serinc2, Fabp3, Zcchc17, Wdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116K09.bB6Ng01-116K09.g
ACCDH921595DH921596
length1,104375
definitionDH921595|Mus musculus domesticus DNA, BAC clone: B6Ng01-116K09, 5' end.DH921596|Mus musculus domesticus DNA, BAC clone: B6Ng01-116K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,583,057 - 129,584,162)(129,423,132 - 129,423,512)
sequence
gaattctatctatccatctatgtaccagaagtgaaggattctgacccctg
gatgaagaatttatttaataaatacaattagaaaaagtacaaaatttgaa
ttccacctcgggcgcactcaacacccgtacgaataaagtccctttgattg
taagaactaaatgtaaaaagcaaaccccagaacagcactagaagaaaaat
aagaaaaacatctaaatttgactaaaaacagttaacttgcaagtgacaga
agactctgtgaataaagttaaaagatgacaaacacacgaggaacacaaac
gtaccacagacatccgggaacgccgcaagaacacaacttgaaataataat
aatatggctttcattttccccgcgtcctcgcgtcaatcagaggctccact
ttacctcaaggagaactggagctttactgcgagaagataaagagaaagag
acagccagcatcccctctcattgtctcaggaacttcgcagccagtccact
gaagcccacatcagaaactacgctttggaaaagccgagcctttgattcga
aaggactgctctggcagagggaagaaaatgttcttgaaaatcaaaaggga
aggtcccggggaacactggagataaatgtaccccttaactagatatcgaa
catgacttgagaagacccgggctgtgtgcccctgaggaagtgcgccgggc
actgggcaggcaagtgggactgagccgtgaccttggcagaggtcacggga
tgtgggaggagaaaattgtcgctgcaggacttcaaagtggggcagtcagt
gcttacaggtcgcctacctcccccggtgccccacccactcaaacatctgg
aactgctaggatccaggccacccacttcccacatctggctgatcctctct
gtagcttcaagtgtctgcaacaggccaccttggctggagggcaacagtag
ccactcagctcttcactatctgctgtggaccttcagagacagggcctgag
gtgctcagctgttgtgatacccacccacccaccccagctcaagcttttct
ggggagtctcacagcccttctccacctcatttatcacagagacaggatgt
tgac
atcagttatctgcccaggaagctctgacaggaacttttaccacaggaagg
gagacttccccacacaaagatttattattaattattacacacttgttttt
ctaaacagggtttcatttttctcagactgacctacaatgcactatgttgc
caaagatgatcctgactctctctctctctcttttgtaagatgtatttatt
tattttatgtatatgagtacagtgtccctgccttcagacacaccagaata
gggcattggatcccacacacatacacacacaaagataaaaatctaagcaa
aacttaaaaattttatcagtatctgtgtctgtgtgtctgttggagtgtat
gtgtgtgtgtgtgtgtgtgagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_129583057_129584162
seq2: B6Ng01-116K09.b_49_1152 (reverse)

seq1  GTCAACAATCCTG-CTCTCTGATAAATGAGTGGGGAGAGGGCCTGTGAGA  49
      |||||| |||||| |||| ||||||||||| | ||||| || ||||||||
seq2  GTCAAC-ATCCTGTCTCTGTGATAAATGAG-GTGGAGAAGGGCTGTGAGA  48

seq1  CTCCCCAGAAAAGCCTGAGCTGTGGGTGGGTGGGTGGGTATCACAACAGC  99
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  CTCCCCAGAAAAGCTTGAGCTG-GGGTGGGTGGGTGGGTATCACAACAGC  97

seq1  TGAGCACCTCAGGCCCTGTCTCTGGAGGTCCACAGCAGATAGTGAAGAGC  149
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGAGCACCTCAGGCCCTGTCTCTGAAGGTCCACAGCAGATAGTGAAGAGC  147

seq1  TGAGTGGCTACTGTTGCCCTCCAGCCAAGGTGGCCTGTTGCAGACACTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCTACTGTTGCCCTCCAGCCAAGGTGGCCTGTTGCAGACACTTG  197

seq1  AAGCTACAGAGAGGATCAGCCAGATGTGGGAAGTGGGTGGCCTGGATCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACAGAGAGGATCAGCCAGATGTGGGAAGTGGGTGGCCTGGATCCT  247

seq1  AGCAGTTCCAGATGTTTGAGTGGGTGGGGCACCGGGGGAGGTAGGCGACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTCCAGATGTTTGAGTGGGTGGGGCACCGGGGGAGGTAGGCGACC  297

seq1  TGTAAGCACTGACTGCCCCACTTTGAAGTCCTGCAGCGACAATTTTCTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCACTGACTGCCCCACTTTGAAGTCCTGCAGCGACAATTTTCTCC  347

seq1  TCCCACATCCCGTGACCTCTGCCAAGGTCACGGCTCAGTCCCACTTGCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATCCCGTGACCTCTGCCAAGGTCACGGCTCAGTCCCACTTGCCT  397

seq1  GCCCAGTGCCCGGCGCACTTCCTCAGGGGCACACAGCCCGGGTCTTCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGCCCGGCGCACTTCCTCAGGGGCACACAGCCCGGGTCTTCTCA  447

seq1  AGTCATGTTCGATATCTAGTTAAGGGGTACATTTATCTCCAGTGTTCCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTTCGATATCTAGTTAAGGGGTACATTTATCTCCAGTGTTCCCC  497

seq1  GGGACCTTCCCTTTTGATTTTCAAGAACATTTTCTTCCCTCTGCCAGAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTTCCCTTTTGATTTTCAAGAACATTTTCTTCCCTCTGCCAGAGC  547

seq1  AGTCCTTTCGAATCAAAGGCTCGGCTTTTCCAAAGCGTAGTTTCTGATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTCGAATCAAAGGCTCGGCTTTTCCAAAGCGTAGTTTCTGATGT  597

seq1  GGGCTTCAGTGGACTGGCTGCGAAGTTCCTGAGACAATGAGAGGGGATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCAGTGGACTGGCTGCGAAGTTCCTGAGACAATGAGAGGGGATGC  647

seq1  TGGCTGTCTCTTTCTCTTTATCTTCTCGCAGTAAAGCTCCAGTTCTCCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCTCTTTCTCTTTATCTTCTCGCAGTAAAGCTCCAGTTCTCCTT  697

seq1  GAGGTAAAGTGGAGCCTCTGATTGACGCGAGGACGCGGGGAAAATGAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAAGTGGAGCCTCTGATTGACGCGAGGACGCGGGGAAAATGAAAG  747

seq1  CCATATTATTATTATTTCAAGTTGTGTTCTTGCGGCGTTCCCGGATGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTATTATTATTTCAAGTTGTGTTCTTGCGGCGTTCCCGGATGTCT  797

seq1  GTGGTACGTTTGTGTTCCTCGTGTGTTTGTCATCTTTTAACTTTATTCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACGTTTGTGTTCCTCGTGTGTTTGTCATCTTTTAACTTTATTCAC  847

seq1  AGAGTCTTCTGTCACTTGCAAGTTAACTGTTTTTAGTCAAATTTAGATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTCTGTCACTTGCAAGTTAACTGTTTTTAGTCAAATTTAGATGT  897

seq1  TTTTCTTATTTTTCTTCTAGTGCTGTTCTGGGGTTTGCTTTTTACATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATTTTTCTTCTAGTGCTGTTCTGGGGTTTGCTTTTTACATTTA  947

seq1  GTTCTTACAATCAAAGGGACTTTATTCGTACGGGTGTTGAGTGCGCCCGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTACAATCAAAGGGACTTTATTCGTACGGGTGTTGAGTGCGCCCGA  997

seq1  GGTGGAATTCAAATTTTGTACTTTTTCTAATTGTATTTATTAAATAAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATTCAAATTTTGTACTTTTTCTAATTGTATTTATTAAATAAATT  1047

seq1  CTTCATCCAGGGGTCAGAATCCTTCACTTCTGGTACATAGATGGATAGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCAGGGGTCAGAATCCTTCACTTCTGGTACATAGATGGATAGAT  1097

seq1  AGAATTC  1106
      |||||||
seq2  AGAATTC  1104

seq1: chr4_129423132_129423512
seq2: B6Ng01-116K09.g_69_449

seq1  GAATTCATCAGTTATCTGCCCAGGAAGCTCTGACAGGAACTTTTACCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTTATCTGCCCAGGAAGCTCTGACAGGAACTTTTACCACA  50

seq1  GGAAGGGAGACTTCCCCACACAAAGATTTATTATTAATTATTACACACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGAGACTTCCCCACACAAAGATTTATTATTAATTATTACACACTT  100

seq1  GTTTTTCTAAACAGGGTTTCATTTTTCTCAGACTGACCTACAATGCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTAAACAGGGTTTCATTTTTCTCAGACTGACCTACAATGCACTA  150

seq1  TGTTGCCAAAGATGATCCTGACTCTCTCTCTCTCTCTTTTGTAAGATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCAAAGATGATCCTGACTCTCTCTCTCTCTCTTTTGTAAGATGTA  200

seq1  TTTATTTATTTTATGTATATGAGTACAGTGTCCCTGCCTTCAGACACACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTTATGTATATGAGTACAGTGTCCCTGCCTTCAGACACACC  250

seq1  AGAATAGGGCATTGGATCCCACACACATACACACACAAAGATAAAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGGGCATTGGATCCCACACACATACACACACAAAGATAAAAATCT  300

seq1  AAGCAAAACTTAAAAATTTTATCAGTATCTGTGTCTGTGTGTCTGTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAACTTAAAAATTTTATCAGTATCTGTGTCTGTGTGTCTGTTGGA  350

seq1  GTGTATGTGTGTGTGTGTGTGTGTGAGTGTG  381
      |||||||||||||||||||||||||||||||
seq2  GTGTATGTGTGTGTGTGTGTGTGTGAGTGTG  381