BAC Information

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BAC

Clone NameB6Ng01-116M15
Chromosome4 (Build37)
Map Location 146,553,756 - 146,800,072
singlet/doubletdoublet
Overlap geneOTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116M15.bB6Ng01-116M15.g
ACCDH921700DH921701
length6491,098
definitionDH921700|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M15, 5' end.DH921701|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,799,477 - 146,800,072)(146,553,756 - 146,554,844)
sequence
gaattccacatccttaaacgttgtccctatcggattctcaccaccactgc
catcttccacactgtccagcatgccttttgtctcagatctcagtaactca
gtacacagatgaccttcccaacactcttccctgcttctgcaaagttctcc
caggtaatgtcttgggggttgccaccccaatttctctccctttccagtca
ccattagtaacccaattcttcctcgagacccctcaagaagctgcacacca
ctccctcactgtgctgcatcctgtgtggtcttctttagttctcatgttcc
cacgcctgctgaaagtccacaatcttttgttgtattcacacctctgagag
cacctaaactccctcttttacctaggcagactctagacaaaacccactaa
ctctaacttctctctctcttttttttttccatcctgcatgaaactgggga
aaacatataagaataatgactcatctgattttaaattcaggatcaagaat
tctgatttctcactggtatccagctgatactgtatggcggctagcctcag
ccttttgcagtctctctctctttctgtctctctctctctgtggggggagg
gagggggaaaattgtccttactcatactatactgccacatgtggactgt
gaattcatacaggagagaaaccttacaaatgcactgaatgtgacaaatgc
tttactttcaaaggcagtctgaggattcatcagagaattcatacaggaga
gaaaccttacaaatgcactgaatgtgacaaatcctttactgaaaagggca
aactgagaattcatcagagaattcatacaggagagaaaccttacaaatgt
agtgaatgtgacaaatgctttactgaataaggccatcagagaatttatac
aggagagataccttacaaatagtttgtatgtgacaaatacaatacaatgt
cagtctgagaaatcatcagtttttaatacagtagagaatatttataaatg
aagtgaacgagacaatcctttaccaagatatatcatcttaaaaatcatta
gagaatacttacagaagagaaacttttcaattatattgaaggtatgaatc
ctttactcttggcctatttcctagaatgttaacagtgaatacttacagga
tacaaacttaactcatgcattgtatgaagaaatatctttgacttcatttc
aggtcaaagagaatatctaataactttttaggggaaagtatttctgttgg
ggaaagtgtggcctgtgttttattcacgttctattcttgacaattgaggc
tccacactagagaattagtatgattatgaaaatcatgtgaaaactttcat
gcaatgttcaaatcttaaataatgtcaactattttttgcttgaagaaact
ctgaaaatgtaaaaatgtagaaagcttttcatgacacctttttacctgtt
caccctttaaatgttacaagatgaagacaagttgggaagtgaggagatat
tattgtgtaccacattcattgagacagaaataatccatttcaaaaggaaa
ctatttaaggtttttaatgcagtcctcaaatatctataaaactggtacat
tcttgtatattttaattcaatgagccattgagaaaattatacttaaagat
atctgcaactgagccaccagacgcaattctttatcctataaattgcttac
gatgtaagtgtgcttcagtattcagtatatattcttctccatgcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146799477_146800072
seq2: B6Ng01-116M15.b_46_654 (reverse)

seq1  TTCCCCCTCCCTCCCCCCCCAGAGAGAGAGAG------AGAGAGAGAGAC  44
      |||||||||||||||||| |||||||||||||      ||||||||||||
seq2  TTCCCCCTCCCTCCCCCCACAGAGAGAGAGAGACAGAAAGAGAGAGAGAC  50

seq1  TGCAAAAGGCTGAGGCTAGCCACCATACAGTATCAGCTGGATACCAATGA  94
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  TGCAAAAGGCTGAGGCTAGCCGCCATACAGTATCAGCTGGATACCAGTGA  100

seq1  GACATCAGAATTCTTGACCCTGAATTTAAAATCAGATGAGTCATTATT-T  143
      || |||||||||||||| |||||||||||||||||||||||||||||| |
seq2  GAAATCAGAATTCTTGATCCTGAATTTAAAATCAGATGAGTCATTATTCT  150

seq1  TTTATGTTTTCCCCAGTTTCATGCAGGATGGAAAAAAA------ATAGAG  187
      | ||||||||||||||||||||||||||||||||||||      | ||||
seq2  TATATGTTTTCCCCAGTTTCATGCAGGATGGAAAAAAAAAAGAGAGAGAG  200

seq1  AAGTTAGAGTTAGTGGGTTTTGTCTAGAGTCTGCCTAGGTAAAAGAGGGA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGAGTTAGTGGGTTTTGTCTAGAGTCTGCCTAGGTAAAAGAGGGA  250

seq1  GTTTAGGTGCTCTCAGAGGTGTGAATACAACAAAAGATTGTGGACTTTCA  287
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  GTTTAGGTGCTCTCAGAGGTGTGAATACAACAAAAGATTGTGGACTTNNN  300

seq1  GCAGGCGTGGGAACATGAGAACTAAAGAAGACCACATAGGATGCAGCACA  337
                     ||||||||||||||||||||| |||||||||||||
seq2  NNNNNNNNNNNNNNNTGAGAACTAAAGAAGACCACACAGGATGCAGCACA  350

seq1  GTGAGGGAGTGGTGTGCAGCTTCTTGAGGGGTCTCGAGGAAGAATTGGGT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAGTGGTGTGCAGCTTCTTGAGGGGTCTCGAGGAAGAATTGGGT  400

seq1  TACTAATGGTGACTTGAAAGGGAGAGAAATTGGGGTGGCAACCCCCAAGA  437
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACTAATGGTGACTGGAAAGGGAGAGAAATTGGGGTGGCAACCCCCAAGA  450

seq1  CATTACCTGGGAGAACTTTGCAGAAGCAGGGAAGAGTGTTGGGAAGGTCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTGGGAGAACTTTGCAGAAGCAGGGAAGAGTGTTGGGAAGGTCA  500

seq1  TCTGTGTACTGAGTTACTGAGATCTGAGACAAAAGGCATGCTGGACAGTG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTACTGAGTTACTGAGATCTGAGACAAAAGGCATGCTGGACAGTG  550

seq1  TCAAAGATGGCAGTGGTGGTGAGACTCCGATAGTGACAACGTTTAAGGAT  587
      |  ||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  TGGAAGATGGCAGTGGTGGTGAGAATCCGATAGGGACAACGTTTAAGGAT  600

seq1  GTGGAATTC  596
      |||||||||
seq2  GTGGAATTC  609

seq1: chr4_146553756_146554844
seq2: B6Ng01-116M15.g_96_1164

seq1  TGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTCA  50

seq1  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACA  100

seq1  AATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATAAA  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATACA  150

seq1  GGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAAA  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAATA  200

seq1  AGGCCATCAGAGAATTCATACAGGAGAGATAGCTTACAAATAGTTTGTAT  250
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  AGGCCATCAGAGAATTTATACAGGAGAGATACCTTACAAATAGTTTGTAT  250

seq1  GTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATAC  300

seq1  AGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGAT  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTAGAGAATATTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGAT  350

seq1  ATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCA  400

seq1  ATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGT  450
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGT  450

seq1  TAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAG  500

seq1  AAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTT  550

seq1  A-GGCAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACGT  599
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAGTATTTCTGTTGGGGAAAGTGTGGCCTGTGTTTTATTCACGT  600

seq1  TCTATTCTTGACAACAATTGAGGCTCCACACTAGAGAATTAGTATGATTA  649
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  TCTATTCTTG---ACAATTGAGGCTCCACACTAGAGAATTAGTATGATTA  647

seq1  TGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCTTAAATAATGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCATGTGAAAACTTTCATGCAATGTTCAAATCTTAAATAATGTC  697

seq1  AACTATTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAATGTAGAAAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTTTGCTTGAAGAAACTCTGAAAATGTAAAAATGTAGAAAGCT  747

seq1  TTTCATGACACCTTTTTACTTGTTCACCC-TTAAATGTTACAAGATGAAG  798
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TTTCATGACACCTTTTTACCTGTTCACCCTTTAAATGTTACAAGATGAAG  797

seq1  ACAAGTTGGGAAGTGAGGAGATATTATTGTGTAACACATTCATTGAGACA  848
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAAGTTGGGAAGTGAGGAGATATTATTGTGTACCACATTCATTGAGACA  847

seq1  GAAATAATCCATTTCAAAAGGAAACTATTTAAGGTCTTTAATGCAGTCCT  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAATAATCCATTTCAAAAGGAAACTATTTAAGGTTTTTAATGCAGTCCT  897

seq1  AAAAATATCTAATAAAACTGGTAACATTC-TGTGTA-TTTAATTCAAATG  946
        |||||||| ||||||||||| |||||| ||| || |||||||| ||||
seq2  -CAAATATCT-ATAAAACTGGT-ACATTCTTGTATATTTTAATTC-AATG  943

seq1  AGCCAATTGAGAAAAATTATACTTAAAAGAATATCTGGCAAACTGAGCCA  996
      |||| |||||| |||||||||||||||   |||||||   ||||||||||
seq2  AGCC-ATTGAG-AAAATTATACTTAAA--GATATCTG--CAACTGAGCCA  987

seq1  CCCAGACAGCATATTCTTTATCCTATAAATATGCTTACAGATGTTACGTG  1046
       |||||| ||| |||||||||||||||||| ||||||| |||| || |||
seq2  -CCAGAC-GCA-ATTCTTTATCCTATAAAT-TGCTTAC-GATG-TAAGTG  1031

seq1  TGCTTCGAGTATTCAGTAATAATAATTCTTCTCAAATGCTTGG  1089
      |||||| |||||||||| |||   |||||||||  ||||||||
seq2  TGCTTC-AGTATTCAGT-ATA--TATTCTTCTC-CATGCTTGG  1069