BAC Information

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BAC

Clone NameB6Ng01-117C22
Chromosome4 (Build37)
Map Location 136,983,511 - 136,984,622
singlet/doubletsinglet
Overlap geneEla3
Upstream geneHtr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711
Downstream gene1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117C22.bB6Ng01-117C22.g
ACCDH921988DH921989
length1,105131
definitionDH921988|Mus musculus domesticus DNA, BAC clone: B6Ng01-117C22, 5' end.DH921989|Mus musculus domesticus DNA, BAC clone: B6Ng01-117C22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccatataggtcaagctggccttgaatatacagaattcagcttg
cctctgcctccaaatgcaccatgctcaaacaccagctctcccaccccgac
ccctttcttctgaggacactctggctgactggcttctcaattgtcacctc
tagcctcaggctgtggacagccttcccacaacccctccagccgagttgtc
aatggcgaggaagctgttccccacagctggccctggcaggtaagagtgac
agcagctgcccccaccaccactccccacgcctgcttctactatgggcact
gaaccccaggtctggtgacatggcagcctgccttgaccccaccagttcct
ctccactcccttctttgacttcaaaaggccggaaactcttggagagagat
atttcttggaggttgtaactgttccatctgcaatctcggctgggatttga
aagtggaatttggggaaagggtggtgcttaagagattggcttaatagcag
tggaacttcgggggctgtgtttagaggaaagattttgtttctaatctccc
tgggttctacaaaagggtcaaagttctgggagcttaaaagggttaggaac
ttcatagaggttcatggggagatgttcatagggctaaactccctgtctaa
caatagtcacaagccacgtgtgactatagtttactataaagtaaggcaga
catagttgttccatacaaacttgtaacccagtagaggcagaaggatcagg
agttcaagatcagcctcagctacacagcaagtttgatgtcactctgactt
ctaagagaccctgtctcaagaaccaaacccagacctggagagagctgagt
ggtgaagagtgcttgctgatcttccagaggacctgagttcagttccttag
tctggcagcttaagaccgcctgtaatagcatctctaggggactcatgctt
tctagtctctgaggggccagaacacattgtgacacacacctgttcagaga
aacacacatgcacacaggaaacatttctttataggctgctgtctttctct
gagtgcttagataaagacagcgtgcactactgcttgtacatacatctttc
aaatt
cagagctcggttcttgagccttgtgcctgcaccgtggggggtgggtaagg
gggggggtccttccccccccttctgactattgtctagtacaatgtcacat
ctcctaatagtactttctcttttccatctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136983511_136984622
seq2: B6Ng01-117C22.b_44_1148 (reverse)

seq1  ATTTTGAAAGATGTTTATGTGCCAGGCAGTGGTTGCACGCTGTCTTTAAT  50
      | |||||||||||  |||||  || ||||| | |||||||||||||| ||
seq2  AATTTGAAAGATG--TATGT-ACAAGCAGTAG-TGCACGCTGTCTTT-AT  45

seq1  CCTAGCACTCAGGAGGAGAGACAGGCAGGCTATAAAG-AATGTTTCCTTG  99
      |  |||||||||   || ||||| |||| |||||||| ||||||||| ||
seq2  CTAAGCACTCAG--AGAAAGACA-GCAGCCTATAAAGAAATGTTTCC-TG  91

seq1  TGTGCATGTGTGTTTCTCTGAACAGGTGTGTGTCAC-ATGTGTTCTGGCC  148
      |||||||||||||||||||||||||||||||||||| ||||||||||| |
seq2  TGTGCATGTGTGTTTCTCTGAACAGGTGTGTGTCACAATGTGTTCTGG-C  140

seq1  CCCTCAGAGACTAGAAGGCATGGGTCCCCTAGGGATGCTATTACAGGCGG  198
      |||||||||||||||| ||||| ||||||||| |||||||||||||||||
seq2  CCCTCAGAGACTAGAAAGCATGAGTCCCCTAGAGATGCTATTACAGGCGG  190

seq1  TCTTAAGCTGCCAGACT-AGGAACTGAACTCAGGTCCTCTGGAAGATCAG  247
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTTAAGCTGCCAGACTAAGGAACTGAACTCAGGTCCTCTGGAAGATCAG  240

seq1  CAAGCACTCTTCACCACTCAGCTCTCTCCAGGTCTGGGTTTGGTTCTTGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTCTTCACCACTCAGCTCTCTCCAGGTCTGGGTTTGGTTCTTGA  290

seq1  GACAGGGTCTCTTAGAAGTCAGAGTGACATCAAACTTGCTGTGTAGCTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTCTCTTAGAAGTCAGAGTGACATCAAACTTGCTGTGTAGCTGA  340

seq1  GGCTGATCTTGAACTCCTGATCCTTCTGCCTCTACTGGGTTACAAGTTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATCTTGAACTCCTGATCCTTCTGCCTCTACTGGGTTACAAGTTTG  390

seq1  TATGGAACAACTATGTCTGCCTTACTTTATAGTAAACTATAGTCACACGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAACAACTATGTCTGCCTTACTTTATAGTAAACTATAGTCACACGT  440

seq1  GGCTTGTGACTATTGTTAGACAGGGAGTTTAGCCCTATGAACATCTCCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGACTATTGTTAGACAGGGAGTTTAGCCCTATGAACATCTCCCC  490

seq1  ATGAACCTCTATGAAGTTCCTAACCCTTTTAAGCTCCCAGAACTTTGACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTCTATGAAGTTCCTAACCCTTTTAAGCTCCCAGAACTTTGACC  540

seq1  CTTTTGTAGAACCCAGGGAGATTAGAAACAAAATCTTTCCTCTAAACACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAGAACCCAGGGAGATTAGAAACAAAATCTTTCCTCTAAACACA  590

seq1  GCCCCCGAAGTTCCACTGCTATTAAGCCAATCTCTTAAGCACCACCCTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCGAAGTTCCACTGCTATTAAGCCAATCTCTTAAGCACCACCCTTT  640

seq1  CCCCAAATTCCACTTTCAAATCCCAGCCGAGATTGCAGATGGAACAGTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATTCCACTTTCAAATCCCAGCCGAGATTGCAGATGGAACAGTTA  690

seq1  CAACCTCCAAGAAATATCTCTCTCCAAGAGTTTCCGGCCTTTTGAAGTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCCAAGAAATATCTCTCTCCAAGAGTTTCCGGCCTTTTGAAGTCA  740

seq1  AAGAAGGGAGTGGAGAGGAACTGGTGGGGTCAAGGCAGGCTGCCATGTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGAGTGGAGAGGAACTGGTGGGGTCAAGGCAGGCTGCCATGTCA  790

seq1  CCAGACCTGGGGTTCAGTGCCCATAGTAGAAGCAGGCGTGGGGAGTGGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTGGGGTTCAGTGCCCATAGTAGAAGCAGGCGTGGGGAGTGGTG  840

seq1  GTGGGGGCAGCTGCTGTCACTCTTACCTGCCAGGGCCAGCTGTGGGGAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGCAGCTGCTGTCACTCTTACCTGCCAGGGCCAGCTGTGGGGAAC  890

seq1  AGCTTCCTCGCCATTGACAACTCGGCTGGAGGGGTTGTGGGAAGGCTGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTCGCCATTGACAACTCGGCTGGAGGGGTTGTGGGAAGGCTGTC  940

seq1  CACAGCCTGAGGCTAGAGGTGACAATTGAGAAGCCAGTCAGCCAGAGTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTGAGGCTAGAGGTGACAATTGAGAAGCCAGTCAGCCAGAGTGT  990

seq1  CCTCAGAAGAAAGGGGTCGGGGTGGGAGAGCTGGTGTTTGAGCATGGTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAGAAAGGGGTCGGGGTGGGAGAGCTGGTGTTTGAGCATGGTGC  1040

seq1  ATTTGGAGGCAGAGGCAAGCTGAATTCTGTATATTCAAGGCCAGCTTGAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGGCAGAGGCAAGCTGAATTCTGTATATTCAAGGCCAGCTTGAC  1090

seq1  CTATATGGTGAATTC  1112
      |||||||||||||||
seq2  CTATATGGTGAATTC  1105