BAC Information

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BAC

Clone NameB6Ng01-117E07
Chromosome4 (Build37)4 (Build37)
Map Location 146,820,714 - 146,821,904145,026,256 - 145,027,383
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701
Downstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117E07.bB6Ng01-117E07.g
ACCDH922050DH922051
length1,1781,110
definitionDH922050|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E07, 5' end.DH922051|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,820,714 - 146,821,904)(145,026,256 - 145,027,383)
sequence
gaattctcatgtgacctcttaggttcaaaacctgttgtgatgattatgag
aggttaaaatggattctagctcagcatggaggtgagggctcagaagcaca
aacccaaacctgggggtctgactttaaagaacagggttctgtgcccatgg
acacctttcagatggcagggctacttgtttcccattggggtgaattttag
tttttcccatattgtacttatgctaaaaaaaaagtcacaagctaattgat
tcctcatatgtgaatagattaaacatactagtgattaataatgcatctgt
gttgagttaaggaaagaaatgaaagccttttcctcagaggcatttaactg
agtgtgagtacaaagttgaattctctacttcatgttccctgtgcttccat
cctctgtgtgtctgttcagttagtttaaatctgtaacttcctgaaggctg
cttgtatagctctccctttctgtctgccttttgtctccatgtttgtgtct
atctgtgcaatctgttgtctgtttgtatctctctgactggccttaagaga
gagctttggagtgcttctagaacatcaagggaaccatcacatggggaaag
aatgggatagtgaagagtaatcttttataaatgattaggtaactggctcc
aagtggtcaagtggacaagacaacaagcatttataaacatgacttttatc
aaccaatacctataactgtatatgcatttttgaactatgttttaagcctc
tgtatttcatgctttcatcaaatgacactcatgcagattctgagcaggac
ttgaaaaagtacataaattaccattgtatctatgcatcaagttaggtttt
aaaagttgatatcaagagaagtccaaggagaataatgttagtttttacgt
tgttctttgaaaagtgtgctaaaccctcaagttgagtaaacagtagatca
cagctttaaatcttaaattttttcagttgccttaattctggttgtgaggt
ccaggaaaatctccatcttttacaagtagatgttttatataatacatgtc
acacgtatggttctgcatgcaaagaagcccatggagcaagaactctcatg
ggagtctgcttgatgtagtcttagtaagatgtttcccaaacaaaacaaaa
aaattttttagtacagcttaagtgtatg
gaattccatgctaatctgtgcagtcctcagatactgtcagaggaaactct
tcctatttcagtctgacccgttcttgatgtgtgtcctacttctgtaatgt
agaaggttgatatttttttcactttttttctaggactcatcacatcttca
attgtgatggatttgtgtatacctctctacagtactgcataagggaacac
tgcagtcattgtcatacatggcagtgtctcctttttagctctagctctca
tcgatacacaaaacttcttttaatttaaataagctgaacattattttgtt
aggactttagtgtcttcacaggaacaagtccgttatattaaaccattgca
ttctctttgagtctctattcattaatttctacataaccttattaatgtct
ttctctgtactattttccaagtgactcattttcaagcttgtaagccctca
catatgtaattatgtgaaagtatctcactgccaaatttctcaatgtatct
ttaccaccccacttctgtgcaactgtctttcatgactgtgctggcactca
ccctgacactctaagaaagtatccttcatgctccataaattctgtcccaa
tgtttattgatttatgtctccacagtagctaattaagaatcaaagctgtg
gctctgcagttaagggtactttttcttgtggtattcaggttcagtttcct
gtaactgcgtggggacttttcatccttccaggactctttttcaagaatat
ctgttatcattttttgagtactatagcttctacagttctgaagtccacag
agttacatggaggcaaaggtaactttccatataaaattaaaattaataaa
cattattttaaaattatatatgatctggaagtattgaagacacaagaagc
agtccaggaaagagatgaatgtgaagcctgaatatgttacaggttatctg
acccttcatatcatattttacattaggatgacctctatgtatgataaaat
gttatgtatacatgagcccagagctggagactcttatttgttatgtaatg
tgagaaaagaatatttatctatgatgatgtatttagtatactttatgaga
aggcacccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146820714_146821904
seq2: B6Ng01-117E07.b_48_1225 (reverse)

seq1  CATACACTTATAAGCTGGTACTTTAAAAAAAATTTTTTTTTGTTTTGTTT  50
      ||||||||  |||||| |||||    ||||||  ||||||||||||||||
seq2  CATACACT--TAAGCT-GTACT----AAAAAA--TTTTTTTGTTTTGTTT  41

seq1  TGTGAACATCTTACTAAGACTACATCCAGCAGGACT-CCATG-GAG-TCT  97
       |  |||||||||||||||||||||| |||| |||| ||||| ||| |||
seq2  GGGAAACATCTTACTAAGACTACATCAAGCA-GACTCCCATGAGAGTTCT  90

seq1  TGCTCCATGGTGCTTTCCTATGCATTGGCAGAACTGTACGTGTGACAATG  147
      |||||||||| ||||  || |||||  |||||||  |||||||||| |||
seq2  TGCTCCATGG-GCTT--CTTTGCAT--GCAGAACCATACGTGTGAC-ATG  134

seq1  TATTATATAAAACATCTTAACTTGTAATAGATGGGGAATTTTCCTGGACC  197
      |||||||||||||||||  |||||||| |||||| | |||||||||||||
seq2  TATTATATAAAACATCT--ACTTGTAAAAGATGGAG-ATTTTCCTGGACC  181

seq1  TCACAACCAGAATTAAGGAAACTTGAAGAAATTTAAGATTTAAAGCTGTG  247
      |||||||||||||||||| ||| |||| ||||||||||||||||||||||
seq2  TCACAACCAGAATTAAGGCAAC-TGAAAAAATTTAAGATTTAAAGCTGTG  230

seq1  ATCCTACTGTTTATTCAACTTGAGGGTTTAGTACACTTTTCAAAGAACAA  297
      || |||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  AT-CTACTGTTTACTCAACTTGAGGGTTTAGCACACTTTTCAAAGAACAA  279

seq1  CGTAAAAACTAACATTATTCTCCTTTGACTTCTCTTGATATCAACTTTTA  347
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CGTAAAAACTAACATTATTCTCCTTGGACTTCTCTTGATATCAACTTTTA  329

seq1  AAACCTAACTTGATGCATAGATACAATGGTAATTTATGTACTTTTTCAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAACTTGATGCATAGATACAATGGTAATTTATGTACTTTTTCAAG  379

seq1  TCCTGCTCAGAAACTGCATGAGTGTCACTTGATGAAAGCATGAAATACAG  447
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  TCCTGCTCAGAATCTGCATGAGTGTCATTTGATGAAAGCATGAAATACAG  429

seq1  AGGCTTAAAACATAGTTCAAAAATGCATATACAGTTATGGGTATTGGTTG  497
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGCTTAAAACATAGTTCAAAAATGCATATACAGTTATAGGTATTGGTTG  479

seq1  ATAAAAGTCATGTTTATAAATGTCTGTTGTCTTGACCACTTGACCACTTG  547
      ||||||||||||||||||||||  |||||||||| |||||||||||||||
seq2  ATAAAAGTCATGTTTATAAATGCTTGTTGTCTTGTCCACTTGACCACTTG  529

seq1  GAGCCAGTTACCTAATCCTTTATAAAATATTACTATTCACTATCCCATTC  597
      ||||||||||||||||| ||||||||| |||||| |||||||||||||||
seq2  GAGCCAGTTACCTAATCATTTATAAAAGATTACTCTTCACTATCCCATTC  579

seq1  TTTCCCCATGTGATGGATCCCTTGATGTTCTAGAAGCACTCCAAAGCTCT  647
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTCCCCATGTGATGGTTCCCTTGATGTTCTAGAAGCACTCCAAAGCTCT  629

seq1  CTCTCAAGGCCAGTCAGAGAGATACAAATAGACAACAGATTACAC----A  693
      |||| ||||||||||||||||||||||| |||||||||||| |||    |
seq2  CTCTTAAGGCCAGTCAGAGAGATACAAACAGACAACAGATTGCACAGATA  679

seq1  GACACCAACATGGAGACAAAAGGCAGACAGAAAGGGAGAGCTATACAAGC  743
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAACATGGAGACAAAAGGCAGACAGAAAGGGAGAGCTATACAAGC  729

seq1  AGCCTTCAGGAAGTTACAGATTTAAACTAACTGAACAGATACACAGAGGA  793
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCCTTCAGGAAGTTACAGATTTAAACTAACTGAACAGACACACAGAGGA  779

seq1  TGGAAGCACAGGGAACATGAAGTAGAGAATTCAACTTTGTACTCACACTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCACAGGGAACATGAAGTAGAGAATTCAACTTTGTACTCACACTC  829

seq1  AGTTAAATGCCTCTGAGGAAAAGGCTTTCATTTCTTTCCTTAACTCAACA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATGCCTCTGAGGAAAAGGCTTTCATTTCTTTCCTTAACTCAACA  879

seq1  CAGATGCATTATTAATCACTAGTATGTTTAATCTATTCACATATGAGGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCATTATTAATCACTAGTATGTTTAATCTATTCACATATGAGGAA  929

seq1  TCAATTAGCTTGTGAC-TTTTTTTTAGCATAAGTACAATATGGGAAAAAC  992
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCAATTAGCTTGTGACTTTTTTTTTAGCATAAGTACAATATGGGAAAAAC  979

seq1  TAAAATTCACCCCAATGGGAAACAAGTAGCCCTGTCATCTGAAAGGTGTC  1042
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAAAATTCACCCCAATGGGAAACAAGTAGCCCTGCCATCTGAAAGGTGTC  1029

seq1  CATGGGCACAGAACCCTGTTCTTTAAAGTCAGACCCCCAGGTTTGGGTTT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCACAGAACCCTGTTCTTTAAAGTCAGACCCCCAGGTTTGGGTTT  1079

seq1  GTGCTTCTGAGCTCTCACCTCCATGCTGAGCTAGAATCCATTTTAACCTC  1142
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTGAGCCCTCACCTCCATGCTGAGCTAGAATCCATTTTAACCTC  1129

seq1  TCATAATCATCACAACAGGTTTTGAACCTAAGAGGTCACATGAGAATTC  1191
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATCATCACAACAGGTTTTGAACCTAAGAGGTCACATGAGAATTC  1178

seq1: chr4_145026256_145027383
seq2: B6Ng01-117E07.g_67_1176

seq1  GAATTCCATGCTAATCTGTGCAGTCCTCAGATACTGTCAGAGGAAACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCTAATCTGTGCAGTCCTCAGATACTGTCAGAGGAAACTCT  50

seq1  TCCTATTTCAGTCTGACCCGTTCTTGATGTGTGTCCTACTTCTGTAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTCAGTCTGACCCGTTCTTGATGTGTGTCCTACTTCTGTAATGT  100

seq1  AGAAGGGTGATATTTTTTTCACTTTTTTTCTAGGACTCATCACATCTTCT  150
      |||||| |||||||||||||||||||||||||||||||||||||   |||
seq2  AGAAGGTTGATATTTTTTTCACTTTTTTTCTAGGACTCATCACA---TCT  147

seq1  TCAATTGTGATGGATTTGTGTATACCTCTCTATAGTACTGCATAAGGGAA  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAATTGTGATGGATTTGTGTATACCTCTCTACAGTACTGCATAAGGGAA  197

seq1  CACTGCAGTCATTGTCATACATGGCAGTGTCTCCTTTTTAGCTCTAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGTCATTGTCATACATGGCAGTGTCTCCTTTTTAGCTCTAGCTC  247

seq1  TCATCGATACACAAACCTTCTTTTAATTTAAATAAGCTGAACATTATTTT  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCATCGATACACAAAACTTCTTTTAATTTAAATAAGCTGAACATTATTTT  297

seq1  GTTAGGACTTTAGTGTCTTCACAGGAACAAGTCCATTATATTAAACCATT  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTTAGGACTTTAGTGTCTTCACAGGAACAAGTCCGTTATATTAAACCATT  347

seq1  GCATTCTCTTTGAGTCTCTATTCATTAATTTCTAAATAACCTTATTAATG  400
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCATTCTCTTTGAGTCTCTATTCATTAATTTCTACATAACCTTATTAATG  397

seq1  TCTTTCTCTGTACTATTTTCCAAGTGACTCATTTTCAAGCTTGTAAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTGTACTATTTTCCAAGTGACTCATTTTCAAGCTTGTAAGCCC  447

seq1  TCACATATGTAATTATGTGAAAGTATCTCACTGCCAAATTTCTCAATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATGTAATTATGTGAAAGTATCTCACTGCCAAATTTCTCAATGTA  497

seq1  TCTTTACCACCCCACTTCTGTGCAACTGTCTTTCATGACTGTGCTTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTTTACCACCCCACTTCTGTGCAACTGTCTTTCATGACTGTGCTGGCAC  547

seq1  TCACCCTGACACTCTAAGAAAGTATCCTTCATGCTCCATAAATTCTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGACACTCTAAGAAAGTATCCTTCATGCTCCATAAATTCTGTCC  597

seq1  CAATGTTTATTGATTTATGTCTCCACAGTAGCTAATTAAGAATCAAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTATTGATTTATGTCTCCACAGTAGCTAATTAAGAATCAAAGCT  647

seq1  GTGGCTCTGCAGTTAAGGGTACTTTTTCTTGTGGTATTCAGGTTCAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTGCAGTTAAGGGTACTTTTTCTTGTGGTATTCAGGTTCAGTTT  697

seq1  CCTGTAACTGCGTGGGGACTTTTCATCCTTCCAGGACTCTTTTTCAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAACTGCGTGGGGACTTTTCATCCTTCCAGGACTCTTTTTCAAGAA  747

seq1  TATCTGTTATCATTTTTTGAGTACTATAGCTTCTACAGTTCTGAAGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTATCATTTTTTGAGTACTATAGCTTCTACAGTTCTGAAGTCCA  797

seq1  CAGAGTTACATGGAGGCAAAGGTAACTTTCCGTATAAAATTAAAATTAAT  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGAGTTACATGGAGGCAAAGGTAACTTTCCATATAAAATTAAAATTAAT  847

seq1  AAACATTATTTTAAAATTATATATGATCTGGAAGTATTGAAAGGACACAA  900
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  AAACATTATTTTAAAATTATATATGATCTGGAAGTATTGAA--GACACAA  895

seq1  GAAGCAGTCCAGGAAAGAGAATGAATGTGAAGCCTGAATATGTTACAGGT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAAGCAGTCCAGGAAAGAG-ATGAATGTGAAGCCTGAATATGTTACAGGT  944

seq1  TATCTGACCCTTCATATCAATATTTTAACAATTAGGAATACCTCTATGTA  1000
      |||||||||||||||||| ||||||||   |||||||  |||||||||||
seq2  TATCTGACCCTTCATATC-ATATTTTA--CATTAGGATGACCTCTATGTA  991

seq1  TGATAAAATGTTATGTATACATGGAGCCCAGAGCCGGAGACTCTTATTTA  1050
      |||||||||||||||||||||| ||||||||||| |||||||||||||| 
seq2  TGATAAAATGTTATGTATACAT-GAGCCCAGAGCTGGAGACTCTTATTTG  1040

seq1  TTAATTGTAATGTGAGAAAAGAATATTTATCCTATGGATGATGTATTTAG  1100
      |||  ||||||||||||||||||||||||| |||| ||||||||||||| 
seq2  TTA--TGTAATGTGAGAAAAGAATATTTAT-CTAT-GATGATGTATTTA-  1085

seq1  GTATTAACTTTTATGAGGAGGCACCCTA  1128
      ||||  || |||||||| ||||||||||
seq2  GTAT--AC-TTTATGAGAAGGCACCCTA  1110