BAC Information

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BAC

Clone NameB6Ng01-117I22
Chromosome4 (Build37)X (Build37)
Map Location 33,892,369 - 33,892,602101,673,599 - 101,674,719
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAnkrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
Downstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117I22.bB6Ng01-117I22.g
ACCDH922269DH922270
length4101,104
definitionDH922269|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I22, 5' end.DH922270|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,892,369 - 33,892,602)(101,673,599 - 101,674,719)
sequence
aggaacaatattaagtaagtgtagagaaaatagatattcttttctcattt
aaaaagaaacactttcaaatttccctcatttagtattacattggctatag
gtttgttgtatatagcctctattatactgaagcatattctttctattcat
agtttcttcagaggctctcgtgcaggacactgaatttgtgaaaggtcttt
ccattatctattgatacaattatgttatttgtgtccctgactgtatttat
gtgctatattactttaattgttttacatgtattacacaatccttttattc
tattaagattttttgcatatatgttcattaggtaaattcaatatttatat
acacatatatgtttgtgtgtgtgtgtgtgtgagagagagagagagagaga
gagagaggga
gaattcctgctcagagccatcaagaccctggaatgcagtcgtgcctttgt
gcaaacaaagggtttaccaagtgcggtgggatagaaacatttgcatgaaa
gtcttacaaggtgggagattgaaagatttgaatgctttctcataaacaca
agttttacagtgtttgataggaaatactactatttagtgtttcttaaacg
tcatgaggaattctgtgaggcattttcttgtgggatgattcatgtgggat
ggcccaacccactctgggcagtgccacccctgagcaggtaaggttgggtt
gcactaaaaagcaaaaggtgtgtgtcggggtggcagctaggcagatggct
cagcaatgaagtgtttgctacttttgcgggagaccttggttccatgacca
gcaaccacaaagtgatttccaaccatctgtaactctggttccaggggatc
cagtggctttcttctgacttcaatgggcagcaagcatgtacatggttcat
ctacaaacatgtaggcaaaccactcacacataaaataaggtgaaaaaaaa
tttttaaaaatgtcttgttgttgttttttaaagccagtttagaaaaccag
aaattgcaagctaggaagcggcgtgtctccatggtctgtgcttcagtttc
tgacttcagttcctatgggagtttctgctctcacttcccttcgtgatggc
ccatgattaggatgagtaaaccaaataaaccttctccttcccaagttgct
ttcaggcacagtgtttaattacagcaatagaacacaaattaggacaaagt
gtacaaacttttaggtagaaaatgaatgaattctgggatctaaatgtgca
gcatggtgactgtcgctcatattatactgtagccttgatatagccttgct
acagactacatccttttagggtatagaagtgttaaggcaggtcttgttac
atagcccaggctaggctagaactcacttagtgctcagctgctctcaaaca
ctctgtcttttattcagctctgagggctggaataaatctgggctacatgg
cagtctttgtccataaataaataaattaattaaataaatattaaatggaa
caaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_33892369_33892602
seq2: B6Ng01-117I22.b_388_457

seq1  ATATATATATACACATATATACATATATACTATATATGCCACACCCCTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCCATATATACACACACATATACATGTGTTATGTGTTTTGTGTGTGTGTG  100
         |||| || | |||||||||    |||| ||||   ||||||||||||
seq2  ---ATATTTATATACACATATA----TGTT-TGTG---TGTGTGTGTGTG  39

seq1  TGTGAGAGAGAGAGAGAGAGAGAGAGAGCAAAGACCAAAAGCCTAGGAAG  150
      || |||||||||||||||||||||||||  |                   
seq2  TGAGAGAGAGAGAGAGAGAGAGAGAGAGGGA-------------------  70

seq1  GAGACTGAGAGAATAATGTGCCACGAAGGCAAGAAAGTCAACCAGGGTCA  200
                                                        
seq2  --------------------------------------------------  70

seq1  CTGAGGGGAAGGTGAAGGCGGGATAGAGGAGGGA  234
                                        
seq2  ----------------------------------  70

seq1: chrX_101673599_101674719
seq2: B6Ng01-117I22.g_68_1171

seq1  GAATTCCTGCTCAGAGCCATCAAGACCCTGGAATGCAGTCGTGCCTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTCAGAGCCATCAAGACCCTGGAATGCAGTCGTGCCTTTGT  50

seq1  GCAAACAAAGGGTTTACCAAGTGCGGTGGGATAGAAACATTTGCATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAAGGGTTTACCAAGTGCGGTGGGATAGAAACATTTGCATGAAA  100

seq1  GTCTTACAAGGTGGGAGATTGAAAGATTTGAATGCTTTCTCATAAACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACAAGGTGGGAGATTGAAAGATTTGAATGCTTTCTCATAAACACA  150

seq1  AGTTTTACAGTGTTTGATAGGAAATACTACTATTTAGTGTTTCTTAAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACAGTGTTTGATAGGAAATACTACTATTTAGTGTTTCTTAAACG  200

seq1  TCATGAGGAATTCTGTGAGGCATTTTCTTGTGGGATGATTCATGTGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGAATTCTGTGAGGCATTTTCTTGTGGGATGATTCATGTGGGAT  250

seq1  GGCCCAACCCACTCTGGGCAGTGCCACCCCTGAGCAGGTAAGGTTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAACCCACTCTGGGCAGTGCCACCCCTGAGCAGGTAAGGTTGGGTT  300

seq1  GCACTAAAAAGCAAAAGGTGTGTGTCGGGGTGGCAGCTAGGCAGATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAAAAGCAAAAGGTGTGTGTCGGGGTGGCAGCTAGGCAGATGGCT  350

seq1  CAGCAATGAAGTGTTTGCTACTTTTGCGGGAGACCTTGGTTCCATGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGAAGTGTTTGCTACTTTTGCGGGAGACCTTGGTTCCATGACCA  400

seq1  GCAACCACAAAGTGATTTCCAACCATCTGTAACTCTGGTTCCAGGGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCACAAAGTGATTTCCAACCATCTGTAACTCTGGTTCCAGGGGATC  450

seq1  CAGTGGCTTTCTTCTGACTTCAATGGGCAGCAAGCATGTACATGGTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTTTCTTCTGACTTCAATGGGCAGCAAGCATGTACATGGTTCAT  500

seq1  CTACAAACATGTAGGCAAACCACTCACACATAAAATAAGGTGAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAACATGTAGGCAAACCACTCACACATAAAATAAGGTGAAAAAAAA  550

seq1  TTTTTAAAAATGTCTTGTTGTTGTTTTTTAAAGCCAGTTTAGAAAACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATGTCTTGTTGTTGTTTTTTAAAGCCAGTTTAGAAAACCAG  600

seq1  AAATTGCAAGCTAGGAAGCGGCGTGTCTCCATGGTCTGTGCTTCAGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCAAGCTAGGAAGCGGCGTGTCTCCATGGTCTGTGCTTCAGTTTC  650

seq1  TGACTTCAGTTCCTATGGGAGTTTCTGCTCTCACTTCCCTTCGTGATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCAGTTCCTATGGGAGTTTCTGCTCTCACTTCCCTTCGTGATGGC  700

seq1  CCATGATTAGGATGAGTAAACCAAATAAACCTTCTCCTTCCCAAGTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATTAGGATGAGTAAACCAAATAAACCTTCTCCTTCCCAAGTTGCT  750

seq1  TTCAGGCACAGTGTTTAATTACAGCAATAGAACACAAATTAGGACAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCACAGTGTTTAATTACAGCAATAGAACACAAATTAGGACAAAGT  800

seq1  GTACAAACTTTTAGGTAGAAAATGAATGAATTCTGGGATCT-AATGTGCA  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTACAAACTTTTAGGTAGAAAATGAATGAATTCTGGGATCTAAATGTGCA  850

seq1  GCATGGTGACTGTCGCTCATATTATACTGTAGCCTTGATATAGCCTTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGACTGTCGCTCATATTATACTGTAGCCTTGATATAGCCTTGCT  900

seq1  ACAGACTACATCCTTTTAGGGTATAGAAGTGTTAAGGCAGGGTCTTGTTA  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACAGACTACATCCTTTTAGGGTATAGAAGTGTTAAGGCA-GGTCTTGTTA  949

seq1  CATAGCCCAGGCTAGGCTAGAACTCACTTAGTGCTCAGGCTGCTCTCAAA  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATAGCCCAGGCTAGGCTAGAACTCACTTAGTGCTCA-GCTGCTCTCAAA  998

seq1  CACTCTGTCCTCTTATTCCAGCCTCCTGAGGGCTGGAATTACATCTGGGC  1049
      |||||||| || ||||| ||||   ||||||||||||| || ||||||||
seq2  CACTCTGT-CTTTTATT-CAGC--TCTGAGGGCTGGAA-TAAATCTGGGC  1043

seq1  TACATGGCAAGTCTTTGTCACAATAAAATAAAATAAAATAAAATAAAATA  1099
      |||||||| |||||||||  | |||||   ||||||| |  ||| |||||
seq2  TACATGGC-AGTCTTTGT--CCATAAA--TAAATAAATT--AATTAAATA  1086

seq1  AAATAAAATAAAATGGAACAAA  1121
          || || ||||||||||||
seq2  ----AATATTAAATGGAACAAA  1104