BAC Information

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BAC

Clone NameB6Ng01-117K21
Chromosome4 (Build37)
Map Location 116,576,749 - 116,737,800
singlet/doubletdoublet
Overlap geneZswim5, Urod, Hectd3, Eif2b3
Upstream geneDmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048
Downstream genePtch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117K21.bB6Ng01-117K21.g
ACCDH922359DH922360
length1,0011,080
definitionDH922359|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K21, 5' end.DH922360|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,737,146 - 116,737,800)(116,576,749 - 116,577,849)
sequence
gaattcctcctcttggtcaagtcagaaaatagtctcccacaaaatcttag
ctatatgggatgtctctatgtatgcacatatttacacagtatgcatatag
tatataacgtggtgccttaattcttcatttgcaacaatccatgagaaaac
agactattctgtgtttgtgtgcactgtgtctatgatcaggggttgatatc
aagtatattcctctatcactttccactttacttttttttttccccttgag
acaggatttctctgtatagtcctggaactcactctgtagacaaggctgtc
cttgaactcacaaagatctgcctgcctctgcctcctgagtgttgggatta
atggtgtgtaccaccactactaccagactccacctttttgagagacagtc
tcaaaaacctaaagtctgctgatttagataggctcaatggccagtaaact
tctgaaagacatctgtttctgttttcccattactgagatcacagacatat
atttctgcacctagcttaaaacacttcttcttttaaattttactttattt
tatgcgtataggtgttttacctgcatgtgtgtctgtggaagtcagaagag
ggagtaagaatagtggccagtcctcctgcatcagctttctaagtacagga
attaaagacacagaccaccaagcctagcctctctgcaaatttagaattcc
tgcacaaaccctatactcttatccattgggaaaagtgggcttctgtatac
tgtaacagttgtactttctgttgtttaagaatttgcacagttaacttact
ttaatataagtataccaactttagactgacataaaggctaagatcgagac
tgacaaatatgcagaatgattctagagaggagcaatgagtaacggccatg
ctcggggcggcttcttcatttgccttttgtggttcccagaacataggctt
ccttttgatggtatcagcataggtgtcgggggctgcagacatggctcact
g
gaattctagtctcacaaaacaaaaacaaaaaacaacaatgacataagagg
tacagggaaaacatatcatgtagagaaactgttcttatatttgaaagtct
aggggttgagagagtgacatatttgagaataaaataaatttagtaaaaat
tagagatttttgactagggtcaaatcagaggtcctaagtgggttataatc
tttgttgttattgggttgtttgtttgtttgagacagggtctcactgtgta
tccctggctaacctggaacttgctttgtagatcaggctagctttgaattc
tcagagatctatctgcctctgtctctgcctgcctctgcctcctcctgagt
gatagaattaaaggctagagcccccatgcctggcaattagggtcttaatt
gaattagaaggttaactgcagtttggagaatgaactagaatgacagcaag
agacaaagttgttttgtaaactataggcattagataatattaagtgcaga
cttcagcagaacaaatgtgaaaatttgaaacatactgagattatcatggc
ccctgtataaggggtggcacatacattcataaagaattccattacaaaaa
aaaaatagttttgatctgggttaatggtacccatgaacaaagtggtttga
ttataagaatgtgtagcaagcagtgaaataagttggtagtgttttaatac
ttagaagttagttgatgagacagcagttggagacaaggacagatggcaga
tttctgaccttatgatactgccacttaataaacggagaggactgatgaag
gaaaacaactgtgtttggaaattgggaacagctttagatcagacttgagg
ttgaatgcctattactacccaagtagatagagatttgaataaagaagaaa
gatttcttatagaatgaagcaaactgatgagaaaatattagacctcctag
cagtattatgactcaataaatggatggacctaaacttcatagcatcagct
gatctaatcctatgatggtgtttttgatttgaaacaagtgtctctatgta
gtcttggctgcctgactcactatagaccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_116737146_116737800
seq2: B6Ng01-117K21.b_43_697 (reverse)

seq1  TTAATTCCTGTACTTAGAAAGCTGATGCAGGAGGACTGGCCACTATTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCCTGTACTTAGAAAGCTGATGCAGGAGGACTGGCCACTATTCTT  50

seq1  ACTCCCTCTTCTGACTTCCACAGACACACATGCAGGTAAAACACCTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTCTTCTGACTTCCACAGACACACATGCAGGTAAAACACCTATAC  100

seq1  GCATAAAATAAAGTAAAATTTAAAAGAAGAAGTGTTTTAAGCTAGGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAATAAAGTAAAATTTAAAAGAAGAAGTGTTTTAAGCTAGGTGCA  150

seq1  GAAATATATGTCTGTGATCTCAGTAATGGGAAAACAGAAACAGATGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATGTCTGTGATCTCAGTAATGGGAAAACAGAAACAGATGTCTT  200

seq1  TCAGAAGTTTACTGGCCATTGAGCCTATCTAAATCAGCAGACTTTAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTTTACTGGCCATTGAGCCTATCTAAATCAGCAGACTTTAGGTT  250

seq1  TTTGAGACTGTCTCTCAAAAAGGTGGAGTCTGGTAGTAGTGGTGGTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACTGTCTCTCAAAAAGGTGGAGTCTGGTAGTAGTGGTGGTACAC  300

seq1  ACCATTAATCCCAACACTCAGGAGGCAGAGGCAGGCAGATCTTTGTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAATCCCAACACTCAGGAGGCAGAGGCAGGCAGATCTTTGTGAGT  350

seq1  TCAAGGACAGCCTTGTCTACAGAGTGAGTTCCAGGACTATACAGAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGACAGCCTTGTCTACAGAGTGAGTTCCAGGACTATACAGAGAAAT  400

seq1  CCTGTCTCAAGGGGAAAAAAAAAAGTAAAGTGGAAAGTGATAGAGGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCAAGGGGAAAAAAAAAAGTAAAGTGGAAAGTGATAGAGGAATA  450

seq1  TACTTGATATCAACCCCTGATCATAGACACAGTGCACACAAACACAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGATATCAACCCCTGATCATAGACACAGTGCACACAAACACAGAAT  500

seq1  AGTCTGTTTTCTCATGGATTGTTGCAAATGAAGAATTAAGGCACCACGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTTTCTCATGGATTGTTGCAAATGAAGAATTAAGGCACCACGTT  550

seq1  ATATACTATATGCATACTGTGTAAATATGTGCATACATAGAGACATCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTATATGCATACTGTGTAAATATGTGCATACATAGAGACATCCCA  600

seq1  TATAGCTAAGATTTTGTGGGAGACTATTTTCTGACTTGACCAAGAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTAAGATTTTGTGGGAGACTATTTTCTGACTTGACCAAGAGGAGG  650

seq1  AATTC  655
      |||||
seq2  AATTC  655

seq1: chr4_116576749_116577849
seq2: B6Ng01-117K21.g_67_1146

seq1  GAATTCTAGTCTCACAAAACAAAAACAAAAAACAACAATGACATAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTCTCACAAAACAAAAACAAAAAACAACAATGACATAAGAGG  50

seq1  TACAGGGAAAACATATCATGTAGAGAAACTGTTCTTATATTTGAAAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGAAAACATATCATGTAGAGAAACTGTTCTTATATTTGAAAGTCT  100

seq1  AGGGGTTGAGAGAGTGACATATTTGAGAATAAAATAAATTTAGTAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGAGAGAGTGACATATTTGAGAATAAAATAAATTTAGTAAAAAT  150

seq1  TAGAGATTTTTGACTAGGGTCAAATCAGAGGTCCTAAGTGGGTTATAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATTTTTGACTAGGGTCAAATCAGAGGTCCTAAGTGGGTTATAATC  200

seq1  TTTGTTGTTATTGGGTTGTTTGTTTGTTTGAGACAGGGTCTCACTGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTATTGGGTTGTTTGTTTGTTTGAGACAGGGTCTCACTGTGTA  250

seq1  TCCCTGGCTAACCTGGAACTTGCTTTGTAGATCAGGCTAGCTTTGAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCTAACCTGGAACTTGCTTTGTAGATCAGGCTAGCTTTGAATTC  300

seq1  TCAGAGATCTATCTGCCTCTGTCTCTGCCTGCCTCTGCCTCCTCCTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATCTATCTGCCTCTGTCTCTGCCTGCCTCTGCCTCCTCCTGAGT  350

seq1  GATAGAATTAAAGGCTAGAGCCCCCATGCCTGGCAATTAGGGTCTTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAATTAAAGGCTAGAGCCCCCATGCCTGGCAATTAGGGTCTTAATT  400

seq1  GAATTAGAAGGTTAACTGCAGTTTGGAGAATGAACTAGAATGACAGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGAAGGTTAACTGCAGTTTGGAGAATGAACTAGAATGACAGCAAG  450

seq1  AGACAAAGTTGTTTTGTAAACTATAGGCATTAGATAATATTAAGTGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAGTTGTTTTGTAAACTATAGGCATTAGATAATATTAAGTGCAGA  500

seq1  CTTCAGCAGAACAAATGTGAAAATTTGAAACATACTGAGATTATCATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCAGAACAAATGTGAAAATTTGAAACATACTGAGATTATCATGGC  550

seq1  CCCTGTATAAGGGGTGGCACATACATTCATAAAGAATTCCATTACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTATAAGGGGTGGCACATACATTCATAAAGAATTCCATTACAAAAA  600

seq1  AAAAATAGTTTTGATCTGGGTTAATGGTACCCATGAACAAAGTGGTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGTTTTGATCTGGGTTAATGGTACCCATGAACAAAGTGGTTTGA  650

seq1  TTATAAGAATGTGTAGCAAGCAGTGAAATAAGTTGGTAGTGTTTTAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAATGTGTAGCAAGCAGTGAAATAAGTTGGTAGTGTTTTAATAC  700

seq1  TTAGAAGTTAGTTGATGAGACAGCAGTTGGAGACAAGGACAGATGGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGTTAGTTGATGAGACAGCAGTTGGAGACAAGGACAGATGGCAGA  750

seq1  TTTCTGACCTTATGATACTGCCACTTAATAAACGGAGAGGACTGATGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGACCTTATGATACTGCCACTTAATAAACGGAGAGGACTGATGAAG  800

seq1  GAAAACAACTGTGTTTGGAAATTGGGGAACAGCTTTAGATCAGACTTGAG  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAAACAACTGTGTTTGGAAATT-GGGAACAGCTTTAGATCAGACTTGAG  849

seq1  GTTGAAATGCCTATTACTTACCCAAGTAGATAAGAGATTTGAATAAAGAA  900
      |||| |||||||||||| ||||||||||||| ||||||||||||||||||
seq2  GTTG-AATGCCTATTAC-TACCCAAGTAGAT-AGAGATTTGAATAAAGAA  896

seq1  GAAAAGATTTCTTATAGAATGAAGGCAAACTGATGAAGAAAATATAAGAC  950
      | ||||||||||||||||||||| ||||||||||| ||||||||| ||||
seq2  G-AAAGATTTCTTATAGAATGAA-GCAAACTGATG-AGAAAATATTAGAC  943

seq1  CTCCTAGCAGTATTATGGACCCAAATAAAATGGATGGACCTAAACTTTCA  1000
      |||||||||||||||| ||| |||   |||||||||||||||||| ||||
seq2  CTCCTAGCAGTATTAT-GACTCAA--TAAATGGATGGACCTAAAC-TTCA  989

seq1  TTAGCATCAGCTGATCTAATCCTATGATTGTTGTTTTTGATTTTTGAGAC  1050
       |||||||||||||||||||||||||| || |||||||||  ||||| ||
seq2  -TAGCATCAGCTGATCTAATCCTATGA-TGGTGTTTTTGA--TTTGAAAC  1035

seq1  AAGGTGTCTCTATGTAGTCTTGGCTGTCCTGGAACTCACTATATAGACCA  1100
      || ||||||||||||||||||||||| ||||  ||||||  |||||||||
seq2  AA-GTGTCTCTATGTAGTCTTGGCTG-CCTG--ACTCAC--TATAGACCA  1079

seq1  G  1101
      |
seq2  G  1080