BAC Information

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BAC

Clone NameB6Ng01-118C14
Chromosome4 (Build37)
Map Location 17,047,590 - 17,088,692
singlet/doubletdoublet
Overlap genenone
Upstream geneRipk2, LOC667150, LOC383994, LOC100040154, LOC667212
Downstream geneLOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118C14.bB6Ng01-118C14.g
ACCDH922714DH922715
length1,1731,119
definitionDH922714|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C14, 5' end.DH922715|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,047,590 - 17,048,775)(17,087,537 - 17,088,692)
sequence
gaattcacacatgaagctctgcattccatgatttatttttgtagttgctg
aagagaattaatatattaggttattgtctatatcagctttgtaaaccttt
gttcactgagactcattagcttccaacatccttatggagcacctgcataa
ttatttattaacatatttctgcttctttttgttttagtccacatcatcag
ttaaaatgtctgcttcaccttccacgtgtactttcttgccttgtaagtag
taccttagataccccattcagtacatttaaatatggaacattgtgtttaa
ttgcacaaggtcatatctatactgctcttatttttcttactcttgcataa
gaaaaatactcatatgcagggactatacttcaaactgatatacaaaaaag
tatgtaagtttagaaaagtttctatatgttataaagcttaagacctacaa
tgcagaaatttaattaattctgagctcaggttcataaacgccaaacataa
atgttagagtggcaaaaatacagagctctgtgtctctccagttcactctt
ctcagtctgcaaattaaacccacaagtgtgaaaatgccaagtgaccactg
aaccatttccaagttaataacatttctgtacgaatccatttggacacccc
ccacccaatctggaacatttaatcatttcaaaccaagttggtttgattat
aaatgaaatgcagtggcatttccagggtgcaaactccacaaactggtttc
aattaccaaatttgcagaaggcgtttcagaaataacttgaagttgtccac
tatgatattgcaaagagcctgaaacaagagagattatgtccacatcctgt
gccaattacttttactttaatttttgagatatttctggtgtcacagttag
aattgcatcaaacaaccatgggtacaaagcataaaatcagtatcttttta
tgtacagtcagaattttcaagagatatatactctggtcattattttaaat
atattttttgtatactttacatttccaaaggtatctgtcaatattctgtg
caacagacaaagagcagaaaagaaaacagtcactgaaatatagtagtagt
actacacaccactgacacagagctaagtatagctcactagagactttagc
cattctatatacaagaccacatt
gaattcccaaaaagaaataaacaaacattaggtagaattgttacaggtgt
ctcccatggagtagaacggcactatggtcagtgagtccaaaaaattctga
actactctggcaagaattacataaatgctatcaaatggcataaactaaga
aagtgttcagaagaaaatggattgcaggaactccaggtgacttcacagag
atgtagtatgagcattgagttttgagatatggtgtgtggtagtaaacaag
gctagacctagaaagttcctagataccacaacattggtttggttagtcat
gaaggtacttggggggaaaatgtccctgttaagttttaaggatgggacat
atttaaaattacaatagttttagcattttttttttctatttgtacactag
gggattgattagagtgcaaaatctggaaataaaggatttggctcagaaga
tgttttattgtcacttatagatggtcatgactgaaccagaaatgtgggtg
atagaataaaagagcaaatcttgccttaatcagatagtttctgtattata
cttgatgggaattgagaaaaaatacaatactctttgaaacatcattgctg
gaagtagtctgtcctttgttataggaatggaatttcttagtacataaaac
tatcccccttgtaggctgaaatcacccttagcacatatttcaagaatgtt
cagaatggccttataattattagagtgtctacaatagcctatagtaattg
tctttatctattatcactcatcatgtaatgtcttttcctctagctttata
gtgtctgagggtttctttgtctaattactttcaggttatttcccatgtgg
taataagaggtatattatggtaataggatccacttctggggccatattct
ccttacatgggttatgaaccatctacctctctttcaacagtgtgcctcag
atgctgggtagagagcttattttaattatttattttatacatattttctc
atacattcatgctattccaaagtcccataccccccccacttctactctca
ttccattttggcctgcatccctgtactggggcatacagtttggtgttcat
ggctctcttccaggatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17047590_17048775
seq2: B6Ng01-118C14.b_46_1218

seq1  GAATTCACACATGAAGCTCTGCATTCCATGATTTATTTTTGTAGTTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACATGAAGCTCTGCATTCCATGATTTATTTTTGTAGTTGCTG  50

seq1  AAGAGAATTAATATATTAGGTTATTGTCTATATCAGCTTTGTAAACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATTAATATATTAGGTTATTGTCTATATCAGCTTTGTAAACCTTT  100

seq1  GTTCACTGAGACTCATTAGCTTCCAACATCCTTATGGAGCACCTGCATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTGAGACTCATTAGCTTCCAACATCCTTATGGAGCACCTGCATAA  150

seq1  TTATTTATTAACATATTTCTGCTTCTTTTTGTTTTAGTCCACATCATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTAACATATTTCTGCTTCTTTTTGTTTTAGTCCACATCATCAG  200

seq1  TTAAAATGTCTGCTTCACCTTCCACGTGTACTTTCTTGCCTTGTAAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTCTGCTTCACCTTCCACGTGTACTTTCTTGCCTTGTAAGTAG  250

seq1  TACCTTAGATACCCCATTCAGTACATTTAAATATGGAACATTGTGTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAGATACCCCATTCAGTACATTTAAATATGGAACATTGTGTTTAA  300

seq1  TTGCACAAGGTCATATCTATACTGCTCTTATTTTTCTTACTCTTGCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAAGGTCATATCTATACTGCTCTTATTTTTCTTACTCTTGCATAA  350

seq1  GAAAAATACTCATATGCAGGGACTATACTTCAAACTGATATACAAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACTCATATGCAGGGACTATACTTCAAACTGATATACAAAAAAG  400

seq1  TATGTAAGTTTAGAAAAGTTTCTATATGTTATAAAGCTTAAGACCTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGTTTAGAAAAGTTTCTATATGTTATAAAGCTTAAGACCTACAA  450

seq1  TGCAGAAATTTAATTAATTCTGAGCTCAGGTTCATAAACGCCAAACATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAATTTAATTAATTCTGAGCTCAGGTTCATAAACGCCAAACATAA  500

seq1  ATGTTAGAGTGGCAAAAATACAGAGCTCTGTGTCTCTCCAGTTCACTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGAGTGGCAAAAATACAGAGCTCTGTGTCTCTCCAGTTCACTCTT  550

seq1  CTCAGTCTGCAAATTAAACCCACAAGTGTGAAAATGCCAAGTGACCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTGCAAATTAAACCCACAAGTGTGAAAATGCCAAGTGACCACTG  600

seq1  AACCATTTCCAAGTTAATAACATTTCTGTACGAATCCATTTGGACACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTCCAAGTTAATAACATTTCTGTACGAATCCATTTGGACACCCC  650

seq1  CCACCCAATCTGGAACATTTAATCATTTCAAACCAAGTTGGTTTGATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAATCTGGAACATTTAATCATTTCAAACCAAGTTGGTTTGATTAT  700

seq1  AAATGAAATGCAGTGGCATTTCCAGGGTGCAAACTCCACAAACTGGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATGCAGTGGCATTTCCAGGGTGCAAACTCCACAAACTGGTTTC  750

seq1  AATTACCAAATTTGCAGAAGGCGTTTCAGAAATAACTTGAAGTTGTCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCAAATTTGCAGAAGGCGTTTCAGAAATAACTTGAAGTTGTCCAC  800

seq1  TATGATATTGCAAAGAGCCTGAAACAAGAGAGATTATGTCCACATCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATTGCAAAGAGCCTGAAACAAGAGAGATTATGTCCACATCCTGT  850

seq1  GCCAATTACTTTTACTTTAATTTTTGAGATATTTCTGGTGTCACAGTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTACTTTTACTTTAATTTTTGAGATATTTCTGGTGTCACAGTTAG  900

seq1  AATTGCATCAAACAACCATGGGTACAAAGCATAAAATCAGTATC-TTTTA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTGCATCAAACAACCATGGGTACAAAGCATAAAATCAGTATCTTTTTA  950

seq1  TGTTACAGTCAGAATTTTCAAAGAGATATATACTCTGGTCATTATTTTAA  999
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TG-TACAGTCAGAATTTTC-AAGAGATATATACTCTGGTCATTATTTTAA  998

seq1  ATAATATTTTTTGTATAACTTTACATTTCCAAAAGGTATCTGTCAATATT  1049
      || ||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  AT-ATATTTTTTGTAT-ACTTTACATTTCC-AAAGGTATCTGTCAATATT  1045

seq1  CTGTGCAAACAAGACAAAGAGCAG-AAAGAAAACAGTTCACTGAAATAAT  1098
      ||||||||   ||||||||||||| ||||||||||| |||||||||||  
seq2  CTGTGCAA--CAGACAAAGAGCAGAAAAGAAAACAG-TCACTGAAATA--  1090

seq1  AAGTTAGTA--AGTACTACACA-CACTTGGACACAAGAGCTATAGTATAG  1145
          |||||  ||||||||||| ||||  ||||| ||||||| |||||||
seq2  ----TAGTAGTAGTACTACACACCACT--GACAC-AGAGCTA-AGTATAG  1132

seq1  CTCACTAGAGACTTTAGCAATTCCTATATACAAGA-CACATT  1186
      |||||||||||||||||| ||| |||||||||||| ||||||
seq2  CTCACTAGAGACTTTAGCCATT-CTATATACAAGACCACATT  1173

seq1: chr4_17087537_17088692
seq2: B6Ng01-118C14.g_69_1187 (reverse)

seq1  GCCATCACTGGAAAGAGAGGCCCATTGGACACACAAACTGTATATGCCCC  50
      |||||| |||| |||||||  ||| || |||| |||||||  ||||||||
seq2  GCCATC-CTGG-AAGAGAG--CCA-TGAACAC-CAAACTG--TATGCCCC  42

seq1  AGTACAGGGGAATGCCAGGGCCAAAAATTGGGAATGAGTGAGTAGGAAAG  100
      |||||||||  ||||   ||||||||    |||||||  ||||||  |||
seq2  AGTACAGGG--ATGC--AGGCCAAAA---TGGAATGA--GAGTAG--AAG  81

seq1  TGGGGGGGGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAATTGA  150
      |  |||||||||||  ||||| ||||| |||||||    ||||||  |||
seq2  T--GGGGGGGGTAT--GGGAC-TTTGGAATAGCAT---GAATGTA--TGA  121

seq1  GGAAAATATGTAATAAAATAAATAAATTAAAAAATAAGCTCTCTACCCAG  200
       |||||||||| ||||||||||||| |   ||||||||||||||||||||
seq2  -GAAAATATGT-ATAAAATAAATAATT---AAAATAAGCTCTCTACCCAG  166

seq1  CATTCTGAGGCACACTTGTTTGAAAGAGAGGTAGATGGTTCATAACCCAT  250
      || |||||||||||||   |||||||||||||||||||||||||||||||
seq2  CA-TCTGAGGCACACT--GTTGAAAGAGAGGTAGATGGTTCATAACCCAT  213

seq1  GTAAGGAGAAATATGGCCCCAG-AGTGGATCCTATTACCATAATATACCT  299
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  GTAAGGAG-AATATGGCCCCAGAAGTGGATCCTATTACCATAATATACCT  262

seq1  CTTATTACCACATGGGAAATAACCTGAAAGTAATTAGACAAAGAAACCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTACCACATGGGAAATAACCTGAAAGTAATTAGACAAAGAAACCCT  312

seq1  CAGACACTATAAAGCTAGAGGAAAAGACATTACATGATGAGTGATAATAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTATAAAGCTAGAGGAAAAGACATTACATGATGAGTGATAATAG  362

seq1  ATAAAGACAATTACTATAGGCTATTGTAGACACTCTAATAATTATAAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACAATTACTATAGGCTATTGTAGACACTCTAATAATTATAAGGC  412

seq1  CATTCTGAACATTCTTGAAATATGTGCTAAGGGTGATTTCAGCCTACAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGAACATTCTTGAAATATGTGCTAAGGGTGATTTCAGCCTACAAG  462

seq1  GGGGATAGTTTTATGTACTAAGAAATTCCATTCCTATAACAAAGGACAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAGTTTTATGTACTAAGAAATTCCATTCCTATAACAAAGGACAGA  512

seq1  CTACTTCCAGCAATGATGTTTCAAAGAGTATTGTATTTTTTCTCAATTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCAGCAATGATGTTTCAAAGAGTATTGTATTTTTTCTCAATTCC  562

seq1  CATCAAGTATAATACAGAAACTATCTGATTAAGGCAAGATTTGCTCTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGTATAATACAGAAACTATCTGATTAAGGCAAGATTTGCTCTTTT  612

seq1  ATTCTATCACCCACATTTCTGGTTCAGTCATGACCATCTATAAGTGACAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATCACCCACATTTCTGGTTCAGTCATGACCATCTATAAGTGACAA  662

seq1  TAAAACATCTTCTGAGCCAAATCCTTTATTTCCAGATTTTGCACTCTAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATCTTCTGAGCCAAATCCTTTATTTCCAGATTTTGCACTCTAAT  712

seq1  CAATCCCCTAGTGTACAAATAGAAAAAAAAAATGCTAAAACTATTGTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCTAGTGTACAAATAGAAAAAAAAAATGCTAAAACTATTGTAAT  762

seq1  TTTAAATATGTCCCATCCTTAAAACTTAACAGGGACATTTTCCCCCCAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATGTCCCATCCTTAAAACTTAACAGGGACATTTTCCCCCCAAG  812

seq1  TACCTTCATGACTAACCAAACCAATGTTGTGGTATCTAGGAACTTTCTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCATGACTAACCAAACCAATGTTGTGGTATCTAGGAACTTTCTAG  862

seq1  GTCTAGCCTTGTTTACTACCACACACCATATCTCAAAACTCAATGCTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCCTTGTTTACTACCACACACCATATCTCAAAACTCAATGCTCAT  912

seq1  ACTACATCTCTGTGAAGTCACCTGGAGTTCCTGCAATCCATTTTCTTCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATCTCTGTGAAGTCACCTGGAGTTCCTGCAATCCATTTTCTTCTG  962

seq1  AACACTTTCTTAGTTTATGCCATTTGATAGCATTTATGTAATTCTTGCCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTCTTAGTTTATGCCATTTGATAGCATTTATGTAATTCTTGCCA  1012

seq1  GAGTAGTTCAGAATTTTTTGGACTCACTGACCATAGTGCCGTTCTACTCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTCAGAATTTTTTGGACTCACTGACCATAGTGCCGTTCTACTCC  1062

seq1  ATGGGAGACACCTGTAACAATTCTACCTAATGTTTGTTTATTTCTTTTTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGACACCTGTAACAATTCTACCTAATGTTTGTTTATTTCTTTTTG  1112

seq1  GGAATTC  1156
      |||||||
seq2  GGAATTC  1119