BAC Information

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BAC

Clone NameB6Ng01-118D12
Chromosome4 (Build37)
Map Location 26,603,606 - 26,692,340
singlet/doubletdoublet
Overlap genenone
Upstream geneFut9, LOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118D12.bB6Ng01-118D12.g
ACCDH922756DH922757
length1,0671,128
definitionDH922756|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D12, 5' end.DH922757|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,603,606 - 26,604,660)(26,691,189 - 26,692,340)
sequence
gaattcccagggactgagtcaccaacaaggagtacacatagagggaccaa
tggccccagccacatatatatagctagttagtttctaatccttactctgt
cataaaatttccattgccaaagaattattccattacctttaatttcacca
ttactgaaaaactgagcaagattatttactctgctactctacatgagggc
tactggtccaattctgataaagtactgcccacttgtggaatcttaagagt
tgtgtctccatcctacaggttactcttgctatttttgtcttacaagctcc
caccatagtagttcatttggtattcttgccactgtatttgggattttcta
ttccaattttctgaactcttcttcattcctcaataaaattaatcctaaag
tctaaggataaagttatcaggaatgtcatagcattgaacctatttcttta
tactggagtattttagctcacagttaagaagagtatgtccatatcaatta
aagtaatgatgataatgggcatgcccacatcctagtaatcctcacatttc
ctcttataggtttctttccaaatgattccagaccttgtgaggaaatatac
tgatagtgagtgaacatctgagacaaaagtatgaaaagtttggttggatt
tatttgaaaatgcatgtgttataaattaaattatgaatatcattgaatgt
atgcttaagccatgacattctttgtccttaattctgtttagcagcataat
cagctgattaggtttattctctaaaactacacaacccaaagaagttacac
agtaagcatatctgatttttttttcttttatctttaagagtttgtggtta
aaagattatctaactagtgaaactgaattttgttaatatatgtcataaca
atgtggattaagtatcttagggagttgcttcaaagtagcctcattcaaac
attgggtttgaaaacttcagacagcttttatttagtatatttctttattc
cctagcctctattaagtacagatatgtttaagtgaagagcttgaatcctc
aggccactgaaagcttt
gaattccacattcagaatagacattcacttctataatcaacaaaccctag
aattatcagtgcctcaactcttcactgttttgtaactgtttgaccttatg
tctaacaaaatttgataaaaaactaagggatgtaatttttaatactgttt
ggcctttagatacaaaattctttccaaggaaagttcaaccaaaaatctca
attccagtgttcgaactacctgtgaatgaatgaagcaccctatgagtaat
gaggtctctgtcatttgatattttctagcataaaaaatgtttaatggtta
tccatgtcatgtgtgaggcatatttctgcatttgtggaatattatttaaa
aggggggctctgcttctctgaggagaagggaaagggaaaatggagcagag
agatttgaaaaggtgggattaggaaaagtgaagtgagggggctgtgatct
ggatctaaagtgaataaaaagtaaattaatgggaaaaataaaacttaaaa
gtgctcattttaaaatatattgaaagttagcctttcatatttataaattc
gtcttctaaatttgccattttaaatgttttagtttcaaatatttttattc
ataatggaggcaaatatgcatatctgactaatacatatttaaatcactga
atacaattttgtccaatggtagtgattggaaataaattcaaatcatttta
atttagattatgcatgcataaacaccagagtaagtattttgaaatgacca
atatacttgactatcaaatgactagaaatagtatctccagttgttaatga
cagtcatggaaaactaacacaattaacacaattcaaatgatctactattt
ttaatataccattaactataatgttaaaaagagtaaatgaatctttagta
cgaaggtatttttatgtcaaatttgcccagacatttaggaaactgtatat
gtcaaccacacttagattcctctgaactcacagcacataaaatactgcta
aaatatattcacttatggggaatgctctaataccatccatgtgctctctg
attgttaaggcacttcactgacatcaagtaaatagatggaacttagtact
gagtctcaggaatggaagaatgaattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_26603606_26604660
seq2: B6Ng01-118D12.b_50_1100

seq1  GAATTCCCAGGGACTGAGTCACCAACAAGGAGTACACATAGAGGGACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGGGACTGAGTCACCAACAAGGAGTACACATAGAGGGACCAA  50

seq1  TGGCCCCAGCCACATATATATAGCTAGTTAGTTTCTAATCCTTACTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCAGCCACATATATATAGCTAGTTAGTTTCTAATCCTTACTCTGT  100

seq1  CATAAAATTTCCATTGCCAAAGAATTATTCCATTACCTTTAATTTCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTTCCATTGCCAAAGAATTATTCCATTACCTTTAATTTCACCA  150

seq1  TTACTGAAAAACTGAGCAAGATTATTTACTCTGCTACTCTACATGAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAAAAACTGAGCAAGATTATTTACTCTGCTACTCTACATGAGGGC  200

seq1  TACTGGTCCAATTCTGATAAAGTACTGCCCACTTGTGGAATCTTAAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTCCAATTCTGATAAAGTACTGCCCACTTGTGGAATCTTAAGAGT  250

seq1  TGTGTCTCCATCCTACAGGTTACTCTTGCTATTTTTGTCTTACAAGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCCATCCTACAGGTTACTCTTGCTATTTTTGTCTTACAAGCTCC  300

seq1  CACCATAGTAGTTCATTTGGTATTCTTGCCACTGTATTTGGGATTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAGTAGTTCATTTGGTATTCTTGCCACTGTATTTGGGATTTTCTA  350

seq1  TTCCAATTTTCTGAACTCTTCTTCATTCCTCAATAAAATTAATCCTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTTTCTGAACTCTTCTTCATTCCTCAATAAAATTAATCCTAAAG  400

seq1  TCTAAGGATAAAGTTATCAGGAATGTCATAGCATTGAACCTATTTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGATAAAGTTATCAGGAATGTCATAGCATTGAACCTATTTCTTTA  450

seq1  TACTGGAGTATTTTAGCTCACAGTTAAGAAGAGTATGTCCATATCAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAGTATTTTAGCTCACAGTTAAGAAGAGTATGTCCATATCAATTA  500

seq1  AAGTAATGATGATAATGGGCATGCCCACATCCTAGTAATCCTCACATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGATGATAATGGGCATGCCCACATCCTAGTAATCCTCACATTTC  550

seq1  CTCTTATAGGTTTCTTTCCAAATGATTCCAGACCTTGTGAGGAAATATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATAGGTTTCTTTCCAAATGATTCCAGACCTTGTGAGGAAATATAC  600

seq1  TGATAGTGAGTGAACATCTGAGACAAAAGTATGAAAAGTTTGGTTGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTGAGTGAACATCTGAGACAAAAGTATGAAAAGTTTGGTTGGATT  650

seq1  TATTTGAAAATGCATGTGTTATAAATTAAATTATGAATATCATTGAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAAATGCATGTGTTATAAATTAAATTATGAATATCATTGAATGT  700

seq1  ATGCTTAAGCCATGACATTCTTTGTCCTTAATTCTGTTTAGCAGCATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAAGCCATGACATTCTTTGTCCTTAATTCTGTTTAGCAGCATAAT  750

seq1  CAGCTGATTAGGTTTATTCTCTAAAACTACACAACCCAAAGAAGTTACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATTAGGTTTATTCTCTAAAACTACACAACCCAAAGAAGTTACAC  800

seq1  AGTAAGCATATCTGATTTTTTTTTCTTTTATCTTTAAGAGTTTGTGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTAAGCATATCTGATTTTTTTTTCTTTTATCTTTAAGAGTTTGTGG-TT  849

seq1  AAAAGATTATCTAACTAGTGAAACTGAATTTTGTTAATATATGTCATAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTATCTAACTAGTGAAACTGAATTTTGTTAATATATGTCATAAC  899

seq1  AATGTGGATTAAGTATCTTAGGGAGTTGCTTCAAAGTAGCCTCATTCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGATTAAGTATCTTAGGGAGTTGCTTCAAAGTAGCCTCATTCAAA  949

seq1  CATT-GGTTTGAAAACTTCAGACAAGCTTTTATTTAGTATA-TTCTTTA-  997
      |||| |||||||||||||||||| ||||||||||||||||| ||||||| 
seq2  CATTGGGTTTGAAAACTTCAGAC-AGCTTTTATTTAGTATATTTCTTTAT  998

seq1  TCCCTAG-CTCTATTAAGTTACAAGAATAATGTTTAAGTGAAAGAGGCTT  1046
      ||||||| |||||||||| ||| |||   ||||||||||| |||| ||||
seq2  TCCCTAGCCTCTATTAAG-TAC-AGA--TATGTTTAAGTG-AAGA-GCTT  1042

seq1  GAATCCTCA  1055
      |||||||||
seq2  GAATCCTCA  1051

seq1: chr4_26691189_26692340
seq2: B6Ng01-118D12.g_69_1196 (reverse)

seq1  TTAATTCATTTCTTTCCATTTCTGAAGACTCAAGGTACTAAGTTCACATT  50
      ||||||||||   ||||||| ||| |||||||  ||||||||||| ||| 
seq2  TTAATTCATT--CTTCCATTCCTG-AGACTCA--GTACTAAGTTC-CAT-  43

seq1  CCTATTTACTTGATGTCAGTGAAGTGCTCTAACATATTCCAAGAAGAGCA  100
       ||||||||||||||||||||||||||  ||||| ||  ||   ||||||
seq2  -CTATTTACTTGATGTCAGTGAAGTGCCTTAACA-AT--CA--GAGAGCA  87

seq1  CATGGATGGTATTTAGAAGCATTTCCCCATAAGTGGAATATATTTTAGCC  150
      ||||||||||| |||| |||| |||||||||||| |||||||||||||| 
seq2  CATGGATGGTA-TTAG-AGCA-TTCCCCATAAGT-GAATATATTTTAGC-  132

seq1  AAGTTATTTTATGTGCTGTGAGTTCAGAGGAATCTAAGTTGTGGTTGACA  200
       || |||||||||||||||||||||||||||||||||| |||||||||||
seq2  -AG-TATTTTATGTGCTGTGAGTTCAGAGGAATCTAAG-TGTGGTTGACA  179

seq1  TATAACAGTTTTCCTAAATGTCTGGGCAAATTTGACATAAAGATTACCTT  250
      ||| |||| |||||||||||||||||||||||||||||||| | ||||||
seq2  TAT-ACAG-TTTCCTAAATGTCTGGGCAAATTTGACATAAA-AATACCTT  226

seq1  CGTACTAAAGATTCATTTACTCTTTTTAACATTATAGTTAATGGTATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTAAAGATTCATTTACTCTTTTTAACATTATAGTTAATGGTATATT  276

seq1  AAAAATAGTAGATCATTTGAATTGTGTTAATTGTGTTAGTTTTCCATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGTAGATCATTTGAATTGTGTTAATTGTGTTAGTTTTCCATGAC  326

seq1  TGTCATTAACAACTGGAGATACTATTTCTAGTCATTTGATAGTCAAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTAACAACTGGAGATACTATTTCTAGTCATTTGATAGTCAAGTAT  376

seq1  ATTGGTCATTTCAAAATACTTACTCTGGTGTTTATGCATGCATAATCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCATTTCAAAATACTTACTCTGGTGTTTATGCATGCATAATCTAA  426

seq1  ATTAAAATGATTTGAATTTATTTCCAATCACTACCATTGGACAAAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGATTTGAATTTATTTCCAATCACTACCATTGGACAAAATTGT  476

seq1  ATTCAGTGATTTAAATATGTATTAGTCAGATATGCATATTTGCCTCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGATTTAAATATGTATTAGTCAGATATGCATATTTGCCTCCATT  526

seq1  ATGAATAAAAATATTTGAAACTAAAACATTTAAAATGGCAAATTTAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAAAATATTTGAAACTAAAACATTTAAAATGGCAAATTTAGAAG  576

seq1  ACGAATTTATAAATATGAAAGGCTAACTTTCAATATATTTTAAAATGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATTTATAAATATGAAAGGCTAACTTTCAATATATTTTAAAATGAGC  626

seq1  ACTTTTAAGTTTTATTTTTCCCATTAATTTACTTTTTATTCACTTTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAGTTTTATTTTTCCCATTAATTTACTTTTTATTCACTTTAGAT  676

seq1  CCAGATCACAGCCCCCTCACTTCACTTTTCCTAATCCCACCTTTTCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCACAGCCCCCTCACTTCACTTTTCCTAATCCCACCTTTTCAAAT  726

seq1  CTCTCTGCTCCATTTTCCCTTTCCCTTCTCCTCAGAGAAGCAGAGCCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCTCCATTTTCCCTTTCCCTTCTCCTCAGAGAAGCAGAGCCCCC  776

seq1  CTTTTAAATAATATTCCACAAATGCAGAAATATGCCTCACACATGACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAATAATATTCCACAAATGCAGAAATATGCCTCACACATGACATG  826

seq1  GATAACCATTAAACATTTTTTATGCTAGAAAATATCAAATGACAGAGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCATTAAACATTTTTTATGCTAGAAAATATCAAATGACAGAGACC  876

seq1  TCATTACTCATAGGGTGCTTCATTCATTCACAGGTAGTTCGAACACTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTCATAGGGTGCTTCATTCATTCACAGGTAGTTCGAACACTGGA  926

seq1  ATTGAGATTTTTGGTTGAACTTTCCTTGGAAAGAATTTTGTATCTAAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGATTTTTGGTTGAACTTTCCTTGGAAAGAATTTTGTATCTAAAGG  976

seq1  CCAAACAGTATTAAAAATTACATCCCTTAGTTTTTTATCAAATTTTGTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAGTATTAAAAATTACATCCCTTAGTTTTTTATCAAATTTTGTTA  1026

seq1  GACATAAGGTCAAACAGTTACAAAACAGTGAAGAGTTGAGGCACTGATAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAGGTCAAACAGTTACAAAACAGTGAAGAGTTGAGGCACTGATAA  1076

seq1  TTCTAGGGTTTGTTGATTATAGAAGTGAATGTCTATTCTGAATGTGGAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGGTTTGTTGATTATAGAAGTGAATGTCTATTCTGAATGTGGAAT  1126

seq1  TC  1152
      ||
seq2  TC  1128