BAC Information

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BAC

Clone NameB6Ng01-118D20
Chromosome4 (Build37)
Map Location 8,623,690 - 8,624,850
singlet/doubletsinglet
Overlap geneChd7
Upstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760
Downstream geneLOC666782, LOC100039584, 4933402J24Rik, Asph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118D20.bB6Ng01-118D20.g
ACCDH922772DH922773
length5861,158
definitionDH922772|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D20, 5' end.DH922773|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
atgcctgtggagtgggcctcaaattcaatacaaaagcagttgtttttttc
ccaaaaataacagtcatgcaactatggtactggtgggcacatattgcctg
gaaggtgggtagtctggcatgcagaagccacagctgagtcagactgttga
tgacaattctcccccagaagcctacacagacccttctagcactgtcaaag
atagccagcaggaaggaagcttccaccttaatctcagcttggttctgtat
tctatacccaaagcatgtggctccaccaagtgggtcttagactctactgc
tggtggacaaccaacagcaatggtctgtgttgcttgggaaaccttgaggg
cttcactaaccaagtagtccataaaatggtttctctctctctctctctct
ctctctctctctctctctctctctcacacaaatatatgtgcatatgtata
tgcagggatgattgtgtgtgtaatgagagagggagagtgtgtgtgacaca
aagtttcttgtggatagtgttatatttatgtaactctctatatatatttc
tgtgaaagtgttatatagatttacacatacaaattt

gaattcttagcaagttgtaactaggaggtctggggagatggctcagaggt
gaagagcactgactactgttccagagggcctgggttcaattcccaggaac
cagatggcagctctcaactgtctgtaactccagaacccaacaccctcaca
cagacacacatgcaggcatcaaggcatataaaaataataaaatttttaaa
aagaataaaaaaaattgaaactaagaagttgaagaaatagtatcagaaat
acactcctatcaaagaactggcaagggccacctgaaatgttggtctctta
tactaagagaccttcaaaaataataactgcaagggaggacatcttcattt
gcagacaaaaaaataaaataaaataaaataaaatataaaaccaaccaaca
acaagtagcaacacaaagtctgtcttaatgttaatacacagtattttcat
aatttgttagttcaaatattattaaaatccactattcaaaagcttttctg
ggtttgtcaatcaacacctctgctaccagcaaccatgatgtataatctac
ttttacaatgaaacaaagtatctctgaagataatttgcatattaaactgg
tttgtacatactccactaaacaccaggtaagtattcaggccaaggctgtt
attttttctccaattacttaaataatatattcatttctccaacacccacg
taggacgcaacggtctcaacacaattaactccctccaagtgagaagcaca
gccagagagcacatggcacccacgagctatctcctggaagcccaaggacc
ttgctcgaatacgtaacaagcaactaaaaagagcttccagaagagaggac
acagaagggcaaacgtggccaagtctggctaccgcagattcgtgcttagc
ctctgatgagcaaactcctacagagtgctacagctagaccagaaacagaa
aaatgctacacacagagccagctgggacggtcactacctcatcccattgc
tgagcctgccagcaatccctagtgggttttcacacgctaacatctgaggg
taggtagtagatatgtgggtggagcaggtctgaaatactacttaccatgg
aaaaaggtcacaacacgtagcctagttccatgccaaagaactcatggact
cttcctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8623690_8624850
seq2: B6Ng01-118D20.g_68_1225 (reverse)

seq1  TGAGGAAGAAGTCCATGAGTTCTTTGAGCATGTGACTAGGGTCACTGTTG  50
      |||||||| ||||||||||||||||| |||||  |||||| |   |||||
seq2  TGAGGAAG-AGTCCATGAGTTCTTTG-GCATGGAACTAGGCTACGTGTTG  48

seq1  TGACCTTTTTTCCATTGTTAGTAGTATTTCAGA-CTGCT-CACACATA-A  97
      ||||| ||||||||| || |||||||||||||| ||||| ||| || | |
seq2  TGACC-TTTTTCCATGGTAAGTAGTATTTCAGACCTGCTCCACCCACATA  97

seq1  TCTACTACTTACCCTCAGATGTTAGCGTGTGAAAACCCACTAGGGATTGC  147
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACCTACCCTCAGATGTTAGCGTGTGAAAACCCACTAGGGATTGC  147

seq1  TGGCAGGCTCAGCAATGGGATGAGGGTGGTGACCGTCCCAGCTGGCTCTG  197
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  TGGCAGGCTCAGCAATGGGATGA-GGTAGTGACCGTCCCAGCTGGCTCTG  196

seq1  TGTGTAGCATTTTTCTGTTTCTGGTCTAGCTTGTAGCACTCTGTAGGAGT  247
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGTAGCATTTTTCTGTTTCTGGTCTAGC-TGTAGCACTCTGTAGGAGT  245

seq1  TTGCTCATCAGAGGCTAAGCACGAATCCTGCGGTAGCCAGACTTGGCCAC  297
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGCTCATCAGAGGCTAAGCACGAAT-CTGCGGTAGCCAGACTTGGCCAC  294

seq1  GTTTGCCCTTCTGTGTCCTCTCTTCTGGAAGCTCTTTTTAGTTGCTTGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCCTTCTGTGTCCTCTCTTCTGGAAGCTCTTTTTAGTTGCTTGTT  344

seq1  ACGTATTCGAGCAAGGTCCTTGGGCTTCCAGGAGATAGCTCGTGGGTGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATTCGAGCAAGGTCCTTGGGCTTCCAGGAGATAGCTCGTGGGTGCC  394

seq1  ATGTGCTCTCTGGCTGTGCTTCTCACTTGGAGGGAGTTAATTGTGTTGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTCTCTGGCTGTGCTTCTCACTTGGAGGGAGTTAATTGTGTTGAG  444

seq1  ACCGTTGCGTCCTACGTGGGTGTTGGAGAAATGAATATATTATTTAAGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTGCGTCCTACGTGGGTGTTGGAGAAATGAATATATTATTTAAGTA  494

seq1  ATTGGAGAAAAAATAACAGCCTTGGCCTGAATACTTACCTGGTGTTTAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGAAAAAATAACAGCCTTGGCCTGAATACTTACCTGGTGTTTAGT  544

seq1  GGAGTATGTACAAACCAGTTTAATATGCAAATTATCTTCAGAGATACTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATGTACAAACCAGTTTAATATGCAAATTATCTTCAGAGATACTTT  594

seq1  GTTTCATTGTAAAAGTAGATTATACATCATGGTTGCTGGTAGCAGAGGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTGTAAAAGTAGATTATACATCATGGTTGCTGGTAGCAGAGGTG  644

seq1  TTGATTGACAAACCCAGAAAAGCTTTTGAATAGTGGATTTTAATAATATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGACAAACCCAGAAAAGCTTTTGAATAGTGGATTTTAATAATATT  694

seq1  TGAACTAACAAATTATGAAAATACTGTGTATTAACATTAAGACAGACTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAACAAATTATGAAAATACTGTGTATTAACATTAAGACAGACTTT  744

seq1  GTGTTGCTACTTGTTGTTGGTTGGTTTTATATTTTATTTTATTTTATTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCTACTTGTTGTTGGTTGGTTTTATATTTTATTTTATTTTATTTT  794

seq1  ATTTTTTTGTCTGCAAATGAAGATGTCCTCCCTTGCAGTTATTATTTTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGTCTGCAAATGAAGATGTCCTCCCTTGCAGTTATTATTTTTG  844

seq1  AAGGTCTCTTAGTATAAGAGACCAACATTTCAGGTGGCCCTTGCCAGTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTCTTAGTATAAGAGACCAACATTTCAGGTGGCCCTTGCCAGTTC  894

seq1  TTTGATAGGAGTGTATTTCTGATACTATTTCTTCAACTTCTTAGTTTCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGGAGTGTATTTCTGATACTATTTCTTCAACTTCTTAGTTTCAA  944

seq1  TTTTTTTTATTCTTTTTAAAAATTTTATTATTTTTATATGCCTTGATGCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATTCTTTTTAAAAATTTTATTATTTTTATATGCCTTGATGCC  994

seq1  TGCATGTGTGTCTGTGTGAGGGTGTTGGGTTCTGGAGTTACAGACAGTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTGTCTGTGTGAGGGTGTTGGGTTCTGGAGTTACAGACAGTTG  1044

seq1  AGAGCTGCCATCTGGTTCCTGGGAATTGAACCCAGGCCCTCTGGAACAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCCATCTGGTTCCTGGGAATTGAACCCAGGCCCTCTGGAACAGT  1094

seq1  AGTCAGTGCTCTTCACCTCTGAGCCATCTCCCCAGACCTCCTAGTTACAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGCTCTTCACCTCTGAGCCATCTCCCCAGACCTCCTAGTTACAA  1144

seq1  CTTGCTAAGAATTC  1161
      ||||||||||||||
seq2  CTTGCTAAGAATTC  1158


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