BAC Information

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BAC

Clone NameB6Ng01-118F04
Chromosome12 (Build37)4 (Build37)
Map Location 4,865,885 - 4,866,246142,851,431 - 142,852,400
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281
Downstream geneGm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik, LOC435292, LOC100042095
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118F04.bB6Ng01-118F04.g
ACCDH922834DH922835
length295973
definitionDH922834|Mus musculus domesticus DNA, BAC clone: B6Ng01-118F04, 5' end.DH922835|Mus musculus domesticus DNA, BAC clone: B6Ng01-118F04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,865,885 - 4,866,246)(142,851,431 - 142,852,400)
sequence
ggttggtgagatggctcagtgggtaagagcacctgactgctcttccgaag
atccaaagttcaaatcccagcaaccacatggtggctcacaaccatctgta
atgagatctgactccctcttctggagtgtctgaagacagctacagtgtac
agctacttattacatacaataaaaataaataaatctttataaaaaatgat
gaattcatgaaattcttaggcaaatggatagaactagaaaatatcatcct
gagtgaggtaaccaatcacaaaagaaaacactggggggggggggg
gaattcacatgtgtgggctccggagctgttgtttcaggctacctatctga
tgtgtagcctttttgttgtagtggctgtagaaaattaatatgggagtgta
cgccccatctggggaaaggatatgacacaggtaagtgcacagaaagccac
aagtgcacagtagtgacagtggctgtgaacaagcagggtgtgttgatgcc
ttatctggaggtggcggtggagaggactttgagggagtgatactgagtgg
cagcagagcgagaggcttaagagctgaggcgcctgcaatcagatctcagc
aggtcaagcagctaggagtgtcaatggccacaagcctagagatggacact
gcaggatacagccatgcgtactgtctacttgtgccaggtgtggtctccta
aggtcaactgtgaccgcatttctattcggcagacaggaagtgtgctatac
acacaccatgttctctcttcttactcttcccttagcaggatccattggca
gcctagtgagggcaggctccaggcaacagacaacaggagtctgaggacag
gaggggacagagaggaggggaggcagcaaggaagctcttcttggctcctc
cagagccaccgctgcaggtgactgccatgttactgtctatgatcctggtc
tgctttgttttccctgcctcttaagggattaaaagtcaggaaaaacctta
agcacagaaggcaacaaactattaaaagtgaggacgcgctcctgcacacc
cacacagatggacagacttcccacatgtggacaaatgattcagaattcaa
agccaagacgctctgggagcagcagttttcaacctgtgggtcgcgacccc
cacagggatctcatattcacatgttcctgcatatcaggatattacattac
gattcatatagtagaaaattacatttacggagtagcccatgaaattattt
ttgtggtcttggggggaaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_4865885_4866246
seq2: B6Ng01-118F04.b_59_350

seq1  TGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTCCCGAAGGTC  50
      |||||||||||||||||||||||||||||| ||||||||| |||||| ||
seq2  TGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTCCGAAGATC  50

seq1  AGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACA  100
         |||||||||||||||||||||||||||||||||||||||||||||  
seq2  CAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATG  100

seq1  AGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTAC---  147
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACAGC  150

seq1  ------TTACATATAAT--AAATAAATAAATCTTTAAAAAAAAAAAAAGA  189
            ||||||| |||  |||||||||||||||| | ||||||  | ||
seq2  TACTTATTACATACAATAAAAATAAATAAATCTTT-ATAAAAAATGATGA  199

seq1  AAGTATTTTTAAAAGCTGAAAGTTTTACAAAAATCTAAACAAGTTCTAGA  239
      |       || |    ||||| | |||   ||||  | | ||   |||||
seq2  A-------TTCA----TGAAATTCTTAGGCAAATGGATAGAA---CTAGA  235

seq1  AACCCTCAGTTTGTGTATACTCGATAAGGCACCGGCTTAGCACGGGGAGA  289
      ||   ||         || ||   | ||| |    |  | |||      |
seq2  AAATATC---------ATCCTGAGTGAGGTA---ACCAATCAC-----AA  268

seq1  AAGACCCTGATCCCTTAAACTGCACCTAGCTGTTAGGTCAGGCCCTGCAG  339
      ||||            ||||                              
seq2  AAGA------------AAAC------------------------------  276

seq1  CCAGCAGACTGGGGGGGGGGGGG  362
             ||||||||||||||||
seq2  -------ACTGGGGGGGGGGGGG  292

seq1: chr4_142851431_142852400
seq2: B6Ng01-118F04.g_69_1041

seq1  GAATTCACATGTGTGGGCTCCGGAGCTGTTGTTTCAGGCTACCTATCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGTGTGGGCTCCGGAGCTGTTGTTTCAGGCTACCTATCTGA  50

seq1  TGTGTAGCCTTTTTGTTGTAGTGGCTGTAGAAAATTAATATGGGAGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCTTTTTGTTGTAGTGGCTGTAGAAAATTAATATGGGAGTGTA  100

seq1  CGCCCCATCTGGGGAAAGGATATGACACAGGTAAGTGCACAGAAAGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCATCTGGGGAAAGGATATGACACAGGTAAGTGCACAGAAAGCCAC  150

seq1  AAGTGCACAGTAGTGACAGTGGCTGTGAACAAGCAGGGTGTGTTGATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACAGTAGTGACAGTGGCTGTGAACAAGCAGGGTGTGTTGATGCC  200

seq1  TTATCTGGAGGTGGCGGTGGAGAGGACTTTGAGGGAGTGATACTGAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGAGGTGGCGGTGGAGAGGACTTTGAGGGAGTGATACTGAGTGG  250

seq1  CAGCAGAGCGAGAGGCTTAAGAGCTGAGGCGCCTGCAATCAGATCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGCGAGAGGCTTAAGAGCTGAGGCGCCTGCAATCAGATCTCAGC  300

seq1  AGGTCAAGCAGCTAGGAGTGTCAATGGCCACAAGCCTAGAGATGGACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAGCAGCTAGGAGTGTCAATGGCCACAAGCCTAGAGATGGACACT  350

seq1  GCAGGATACAGCCATGCGTACTGTCTACTTGTGCCAGGTGTGGTCTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATACAGCCATGCGTACTGTCTACTTGTGCCAGGTGTGGTCTCCTA  400

seq1  AGGTCAACTGTGACCGCATTTCTATTCGGCAGACAGGAAGTGTGCTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAACTGTGACCGCATTTCTATTCGGCAGACAGGAAGTGTGCTATAC  450

seq1  ACACACCATGTTCTCTCTTCTTACTCTTCCCTTAGCAGGATCCATTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCATGTTCTCTCTTCTTACTCTTCCCTTAGCAGGATCCATTGGCA  500

seq1  GCCTAGTGAGGGCAGGCTCCAGGCAACAGACAACAGGAGTCTGAGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTGAGGGCAGGCTCCAGGCAACAGACAACAGGAGTCTGAGGACAG  550

seq1  GAGGGGACAGAGAGGAGGGGAGGCAGCAAGGAAGCTCTTCTTGGCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGACAGAGAGGAGGGGAGGCAGCAAGGAAGCTCTTCTTGGCTCCTC  600

seq1  CAGAGCCACCGCTGCAGGTGACTGCCATGTTACTGTCTATGATCCTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCACCGCTGCAGGTGACTGCCATGTTACTGTCTATGATCCTGGTC  650

seq1  TGCTTTGTTTTCCCTGCCTCTTAAGGGATTAAAAGTCAGGAAAAACCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTTTTCCCTGCCTCTTAAGGGATTAAAAGTCAGGAAAAACCTTA  700

seq1  AGCACAGAAGGCAACAAACTATTAAAAGTGAGGACGCGCTCCTGCACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGAAGGCAACAAACTATTAAAAGTGAGGACGCGCTCCTGCACACC  750

seq1  CACACAGATGGACAGACTTCCCACATGTGGACAAATGATTCAGAATCCAA  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACACAGATGGACAGACTTCCCACATGTGGACAAATGATTCAGAATTCAA  800

seq1  AGCCAAGACGCTCT-GGAGCAGCAGTTCTCAACCTGTGGGTCGCGACCCC  849
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  AGCCAAGACGCTCTGGGAGCAGCAGTTTTCAACCTGTGGGTCGCGACCCC  850

seq1  CACAGGGATCTCATA-TCACATG-TCCTGCATATCA-GATATTTACATTA  896
      ||||||||||||||| ||||||| |||||||||||| |||| ||||||||
seq2  CACAGGGATCTCATATTCACATGTTCCTGCATATCAGGATA-TTACATTA  899

seq1  CGATTCATAATAGTAGAAAAATTACAATTACGAAGTAGCCCATGAAAATA  946
      |||||||| ||||||| ||||||||| ||||| |||||||||||||| ||
seq2  CGATTCAT-ATAGTAG-AAAATTACATTTACGGAGTAGCCCATGAAATTA  947

seq1  ATTTTGTGGTC-TGGGGGGAAGGGG-  970
       |||||||||| ||||||||| ||| 
seq2  TTTTTGTGGTCTTGGGGGGAAAGGGG  973