BAC Information

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BAC

Clone NameB6Ng01-119A04
Chromosome4 (Build37)
Map Location 90,112,730 - 90,246,515
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC664785, Dmrta1, Zfp352, LOC619842, LOC435792
Downstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119A04.bB6Ng01-119A04.g
ACCDH923333DH923334
length1,0491,188
definitionDH923333|Mus musculus domesticus DNA, BAC clone: B6Ng01-119A04, 5' end.DH923334|Mus musculus domesticus DNA, BAC clone: B6Ng01-119A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,245,459 - 90,246,515)(90,112,730 - 90,113,928)
sequence
gaattcttcacagatgctcagcctgtttaaaatggcttcatgtctttcca
tagggtgttccatttgctaagccctgagcttttcttacttatatattttt
tttaataaaataaaaattttaaaggagaagcaaaatattttctgattctt
ttctttctatggaaatttgctgtagcttctgataatgtcttaacagcttt
tgaatcatgtaattgattgtttgcctgagcagctttcttcatggtgtctg
tccattgtagaatagatgcattgccaaagtgtgaagtgagggtctctatc
ttagttgctaaatgtaaattctcaaaaatttcagttttaaccgcaggaac
tgctaggaaataccaaacttaaactaaagacattaataaggaagagacta
aaagtaacagtgtatcaatcaaatttctactaatctcaaaatttaaaata
atacattctatttttcaaaatattataaatttatactcaattttttttac
cattctttgctgctaacaatttaaagattatatgtttataaagtgtttta
taatacattaggaactttgtgtggagaaaggcactagacatctgagtctg
tgaaagaatttttttttatccttgtgccatttgtggggctcctttccttt
aggtgaattgacttgtccaactttgatgtgatgatttttgttttatctta
gtatacatatttttgttgttgttgttgtctcttagaaattggttcttttt
taaagaaagagatcaagaggtgcatccagattgggggtggggaaggtaga
gaggacctgagaagaaggattagagggagggtactgtaatcaggatatag
tgtacagaaagagaatctatttttaataaatgggggtaaaattagaaaag
caagctagagacatagctgaatcactgaatgtgtactactctttcagatg
acccaatgtgattccctgcacaatgtaggcagctcacaccacctgtatct
taaatcatagtctgattttgagagcactgatagtcatgctctagacaaa
gaattcagatcatcctcaagagcaaacagtgctcttaagtgatgagccaa
cgactgagcttcctgataaacactaagaaacctgataaacactatgagta
tcagtaataattggtatgtattgaaataaacaatagaccaagtccatatc
aagcattccagattaattatttcatcatttaagtacaggggacttttgaa
attgatagtattgttgctacaatcactaaatagaaaaggaccacctggta
aggcgctttggtaagctatgcaagatggacatggaggagctaggcctttt
gaggtcatggtatatattaggaatttctctcaaagatgggtatacattga
taactttcttacatatgtggttcacaaaatcctttcagaaaatcatgctc
ctaataatggtgattttgcttatacaagagaatctcaatttctactaatg
ttaaaagaatcaaaacttaattggcattacttcagattctatattactgc
cagtatttaaaaacaaaaaaacaaaaactaatgctgggttttgaagaagg
gttaactaggaaagtcacaattacctgacagtttatcagagtattaaatg
ctttttctcatgacatatctattgaagccatatatttcttaatatatatt
aactaaaatagatatcacatctaaacaaatagaaaaacaagttttgtcac
cctttaatttatgaacagaactattttgtaggccttaagaaaatgcaaaa
tgaactatgcacagtgacatatgtctacagtctcagcacttgggtagcag
aaaaaagaggataaaaagcagaggcaggaagattgctacaaattcaaagc
taatctgatctgtacagcaaggtccagattggccagagttgcacactgag
acagtctccatggtagcacatttagtattctgtttgaaagtaaattcaat
tttataaaagggttttttttttgtcacagaaaatggattagatttattat
tgataatttactagaaataagtagatgctttaaaatttagcatctgctcc
tgtaatattgacagaataacttcaaataaacaatgtacctcagtacggtt
tatccaaggtattctgacaaataaaacaaaacaaacttgtttgaattact
ttgctagagattctctaagaaacataaccatgaatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90245459_90246515
seq2: B6Ng01-119A04.b_48_1096 (reverse)

seq1  TTTGTCTATGAGCATGACTATCAGTGCTCTCAAAATCAGAACTATTGAAT  50
      |||||||| |||||||||||||||||||||||||||||| |||||   ||
seq2  TTTGTCTA-GAGCATGACTATCAGTGCTCTCAAAATCAG-ACTAT--GAT  46

seq1  TTAAGATAACAGGTGGTGTGAGCTGCCTAACATTGGTGCAGGGAATCACA  100
      ||||||| |||||||||||||||||||| ||||| |||||||||||||||
seq2  TTAAGAT-ACAGGTGGTGTGAGCTGCCT-ACATT-GTGCAGGGAATCACA  93

seq1  TTTGGGTCATCTGAAAGAGTAGTACACATTCAGTGATTCAGCTATGTCTC  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGGGTCATCTGAAAGAGTAGTACACATTCAGTGATTCAGCTATGTCTC  142

seq1  TAGCTTGCTTTTCTAATTTTA-CCCCATTTATTAAAAATAGATTCTCTTT  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGCTTGCTTTTCTAATTTTACCCCCATTTATTAAAAATAGATTCTCTTT  192

seq1  CTGTACACTATATCCTGATTACAGTTACCCTCCCTCTAATCCTTCTTCTC  249
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGTACACTATATCCTGATTACAG-TACCCTCCCTCTAATCCTTCTTCTC  241

seq1  AGGTCCTCTCTACCTTCCCCACCCCCAATCTGGATGCACCTCTTGATCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCTCTACCTTCCCCACCCCCAATCTGGATGCACCTCTTGATCTC  291

seq1  TTTCTTTAAAAAAGAACCAATTTCTAAGAGACAACAACAACAACAAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAAAAAAGAACCAATTTCTAAGAGACAACAACAACAACAAAAAT  341

seq1  ATGTATACTAAGATAAAACAAAAATCATCACATCAAAGTTGGACAAGTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACTAAGATAAAACAAAAATCATCACATCAAAGTTGGACAAGTCA  391

seq1  ATTCACCTAAAGGAAAGGAGCCCCACAAATGGCACAAGGATAAAAAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTAAAGGAAAGGAGCCCCACAAATGGCACAAGGATAAAAAAAAA  441

seq1  TTCTTTCACAGACTCAGATGTCTAGTGCCTTTCTCCACACAAAGTTCCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCACAGACTCAGATGTCTAGTGCCTTTCTCCACACAAAGTTCCTA  491

seq1  ATGTATTATAAAACACTTTATAAACATATAATCTTTAAATTGTTAGCAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTATAAAACACTTTATAAACATATAATCTTTAAATTGTTAGCAGC  541

seq1  AAAGAATGGTAAAAAAAATTGAGTATAAATTTATAATATTTTGAAAAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGGTAAAAAAAATTGAGTATAAATTTATAATATTTTGAAAAATA  591

seq1  GAATGTATTATTTTAAATTTTGAGATTAGTAGAAATTTGATTGATACACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATTATTTTAAATTTTGAGATTAGTAGAAATTTGATTGATACACT  641

seq1  GTTACTTTTAGTCTCTTCCTTATTAATGTCTTTAGTTTAAGTTTGGTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTTTAGTCTCTTCCTTATTAATGTCTTTAGTTTAAGTTTGGTATT  691

seq1  TCCTAGCAGTTCCTGCGGTTAAAACTGAAATTTTTGAGAATTTACATTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCAGTTCCTGCGGTTAAAACTGAAATTTTTGAGAATTTACATTTA  741

seq1  GCAACTAAGATAGAGACCCTCACTTCACACTTTGGCAATGCATCTATTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAAGATAGAGACCCTCACTTCACACTTTGGCAATGCATCTATTCT  791

seq1  ACAATGGACAGACACCATGAAGAAAGCTGCTCAGGCAAACAATCAATTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGACAGACACCATGAAGAAAGCTGCTCAGGCAAACAATCAATTAC  841

seq1  ATGATTCAAAAGCTGTTAAGACATTATCAGAAGCTACAGCAAATTTCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCAAAAGCTGTTAAGACATTATCAGAAGCTACAGCAAATTTCCAT  891

seq1  AGAAAGAAAAGAATCAGAAAATATTTTGCTTCTCCTTTAAAATTTTTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAGAATCAGAAAATATTTTGCTTCTCCTTTAAAATTTTTATT  941

seq1  TTATTAAAAAAAATATATAAGTAAGAAAAGCTCAGGGCTTAGCAAATGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAAAAAATATATAAGTAAGAAAAGCTCAGGGCTTAGCAAATGGA  991

seq1  ACACCCTATGGAAAGACATGAAGCCATTTTAAACAGGCTGAGCATCTGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTATGGAAAGACATGAAGCCATTTTAAACAGGCTGAGCATCTGTG  1041

seq1  AAGAATTC  1057
      ||||||||
seq2  AAGAATTC  1049

seq1: chr4_90112730_90113928
seq2: B6Ng01-119A04.g_67_1254

seq1  GAATTCAGATCATCCTCAAGAGCAAACAGTGCTCTTAAGTGATGAGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCATCCTCAAGAGCAAACAGTGCTCTTAAGTGATGAGCCAA  50

seq1  CGACTGAGCTTCCTGATAAACACTAAGAAACCTGATAAACACTATGAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGAGCTTCCTGATAAACACTAAGAAACCTGATAAACACTATGAGTA  100

seq1  TCAGTAATAATTGGTATGTATTGAAATAAACAATAGACCAAGTCCATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATAATTGGTATGTATTGAAATAAACAATAGACCAAGTCCATATC  150

seq1  AAGCATTCCAGATTAATTATTTCATCATTTAAGTACAGGGGACTTTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCCAGATTAATTATTTCATCATTTAAGTACAGGGGACTTTTGAA  200

seq1  ATTGATAGTATTGTTGCTACAATCACTAAATAGAAAAGGACCACCTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAGTATTGTTGCTACAATCACTAAATAGAAAAGGACCACCTGGTA  250

seq1  AGGCGCTTTGGTAAGCTATGCAAGATGGACATGGAGGAGCTAGGCCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCTTTGGTAAGCTATGCAAGATGGACATGGAGGAGCTAGGCCTTTT  300

seq1  GAGGTCATGGTATATATTAGGAATTTCTCTCAAAGATGGGTATACATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCATGGTATATATTAGGAATTTCTCTCAAAGATGGGTATACATTGA  350

seq1  TAACTTTCTTACATATGTGGTTCACAAAATCCTTTCAGAAAATCATGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCTTACATATGTGGTTCACAAAATCCTTTCAGAAAATCATGCTC  400

seq1  CTAATAATGGTGATTTTGCTTATACAAGAGAATCTCAATTTCTACTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATGGTGATTTTGCTTATACAAGAGAATCTCAATTTCTACTAATG  450

seq1  TTAAAAGAATCAAAACTTAATTGGCATTACTTCAGATTCTATATTACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAATCAAAACTTAATTGGCATTACTTCAGATTCTATATTACTGC  500

seq1  CAGTATTTAAAAACAAAAAAACAAAAACTAATGCTGGGTTTTGAAGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTAAAAACAAAAAAACAAAAACTAATGCTGGGTTTTGAAGAAGG  550

seq1  GTTAACTAGGAAAGTCACAATTACCTGACAGTTTATCAGAGTATTAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTAGGAAAGTCACAATTACCTGACAGTTTATCAGAGTATTAAATG  600

seq1  CTTTTTCTCATGACATATCTATTGAAGCCATATATTTCTTAATATATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTCATGACATATCTATTGAAGCCATATATTTCTTAATATATATT  650

seq1  AACTAAAATAGATATCACATCTAAACAAATAGAAAAACAAGTTTTGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAATAGATATCACATCTAAACAAATAGAAAAACAAGTTTTGTCAC  700

seq1  CCTTTAATTTATGAACAGAACTATTTTGTAGGCCTTAAGAAAATGCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATTTATGAACAGAACTATTTTGTAGGCCTTAAGAAAATGCAAAA  750

seq1  TGAACTATGCACAGTGACATATGTCTACAGTCTCAGCACTTGGGTAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTATGCACAGTGACATATGTCTACAGTCTCAGCACTTGGGTAGCAG  800

seq1  AAAAAAGAGGATAAAAAGCAGAGGCAGGAAGATTGCTACAAATTCAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAGGATAAAAAGCAGAGGCAGGAAGATTGCTACAAATTCAAAGC  850

seq1  TAATCTGATCTGTACAGCAAGGTCCAGATTGGCCAGAGTTGCACACTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGATCTGTACAGCAAGGTCCAGATTGGCCAGAGTTGCACACTGAG  900

seq1  ACAGTCTCCATGGTAGCACATTTAGTATTCTGTTTGAAAGTAAATTCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCCATGGTAGCACATTTAGTATTCTGTTTGAAAGTAAATTCAAT  950

seq1  TTTATAAAAAGGGTTTTTTTTTGTCAACAGAAAATGGATTAGATTTATTA  1000
      ||||||||| || |||||||||||| ||||||||||||||||||||||||
seq2  TTTATAAAAGGGTTTTTTTTTTGTC-ACAGAAAATGGATTAGATTTATTA  999

seq1  TTGATAATTTAACTAGATATTAAGTAGATGCTTTAAAATTTAGCATCTGC  1050
      |||||||||| |||||| | ||||||||||||||||||||||||||||||
seq2  TTGATAATTT-ACTAGA-AATAAGTAGATGCTTTAAAATTTAGCATCTGC  1047

seq1  TCCTGTAAATATTGACAGATATACTTCAAATAAACAAATGTA-CTCAGTA  1099
      |||||| ||||||||||||   ||||||||||||| |||||| |||||| 
seq2  TCCTGT-AATATTGACAGAATAACTTCAAATAAAC-AATGTACCTCAGT-  1094

seq1  ACGGTTTATCAAAAGGTATTCTGACAAAATAAAACAAAACAAAACCTTGT  1149
      ||||||||||  ||||||||||||| |||||||||||||||||  |||| 
seq2  ACGGTTTATC-CAAGGTATTCTGAC-AAATAAAACAAAACAAA--CTTG-  1139

seq1  TTTGATTTACTTTGCTAGAAGATCCTCTAAAGAAACATAA-CATGAATCC  1198
      ||||| |||||||||||| |||| |||| ||||||||||| |||||||||
seq2  TTTGAATTACTTTGCTAG-AGATTCTCT-AAGAAACATAACCATGAATCC  1187

seq1  C  1199
      |
seq2  C  1188