BAC Information

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BAC

Clone NameB6Ng01-119A09
Chromosome4 (Build37)4 (Build37)
Map Location 146,706,796 - 146,707,743145,586,471 - 145,587,639
singlet/doubletsingletsinglet
Overlap geneLOC666581
Upstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119A09.bB6Ng01-119A09.g
ACCDH923343DH923344
length1,2331,114
definitionDH923343|Mus musculus domesticus DNA, BAC clone: B6Ng01-119A09, 5' end.DH923344|Mus musculus domesticus DNA, BAC clone: B6Ng01-119A09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,706,796 - 146,707,743)(145,586,471 - 145,587,639)
sequence
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgc
tttacccaacaatccaatcttactattcatcagagaattcatacaggaga
gaaaccttacaaatgccctgaatgtggcaaatgctttactgaaaaaagca
gtctgagaattcatcagagaattcatacaggagagaaaccttacaaatgc
agtgaatgtggcaaatgctttactgaaaaaagcagtctgagaattcatca
gagaattcatacaggagagaaaccttacaaatgcagtgaatgtggcaaat
gctttactgtaaaaagcagtctgagaattcatcagagaattcatacagga
gagaaaccttacaaatgcagtgaatgtgacaaatgctttaccaaacaatc
caatcttagtattcatcagagaattcatacaggagagaaaccttacaaat
gcagtgaatgtgaaaaatgctttaatgaaaaaaacattctgaaaattcat
cagagaattcatacaggagagagaccttacaaatgcagtgaatgtgaaaa
atgcttttcccgaaaattccatcttggtattcatcagagaattcatacag
gaaagaaaccttacaaatagattgtatgtgacaaatacaatactcacaat
gtcagtcttagaaatcatcagttatttcatacagtagagaatctttataa
atgaagtaaatgaggcaattctttaccaagatatattatctcaaaattca
ttagagaatacttagagaagacaaacttttcaaatatattgtaggtatga
atcctttccttttggcctatttcctagactgtaacagtgaatacttacag
gctagaaacttaactcatgcattgtatgaagaaatatctttgacttcatt
tcagtcagagagaacatctaagaactttttagggtaaagtatttctgttg
gggaaaatggtgtattcttggcaacacttgaggctccacactagagaatt
agtatgatatgaaaatctgtgaaaatattcatgcaatgttcaaatcttag
gtaatgtcaacttatttatgctgtgagaaactctgaaaatgtggaaatgt
tagaaagcttttcatgacacttttactgtcatcctcaaacgttaacaatg
agacaagttggaagtcagaaagaatggaattataaacttaatcggaaaga
aataatccaattccaaaggaaacatatttaagg
gagctttattaaggcttttgcaaagacaaccatcccggtacacaaactcc
agagacggccaaggatctacagggttattaaaaaaaaaaatctggcaacc
ataaaattaattaaaacatcaccatgaacccaattcacaggatctcaaac
ttcctgataatggtaagataccacaacaaaattatgagagtggcggcaga
aaacgcacccctgctccacacctctgcccagctcctgcccgttccccagt
ccaacagctcctctgacctggaaggtgacaggaccagctgctcaatgtcc
taggaggggcaattgcagcctaagtaagttttcaggttccgcaaacactg
aattgtgagagtggcggcagaaaaggcacccctgctccacaccgctgccc
agctcctgccagttttccagtccaacagctcctctaacctggaaggtgac
aggaccagctcctggatgtcctaggaggccagcaaaacaactgctggcta
agaaagttttcaggtaccacaaatactaggcactagtctccctccatgac
ttcctgaccacgaggcagctgagatgcaagaagaaaggtgaaaccgcgga
acttgccttcacctctgcctagcccctccttctggacccgcccactattc
agcagcttcctggaattcttctaagcccacctacttagggaccttttaat
aattagctttccacttcttcacagcagtttttgttgttttggacttttgc
ttgcttccttgcttgcttgcttgcttgttcctttgcttttaatttttctt
tttcttaaactcatctaatcgtgcaggaatcccacactccccatcaggaa
ccacttcctccaattctgttgcaagcgccttccacacaacttccctagga
cctactctacacagcttcttcacaaagttgctgccagactagaccagagc
cggatgtagttggacactgcacctgggttctgaacccttctgaaacaacg
atctgtctaacttctcatattgtgagtgtacctctgggctataaatgcac
aaaataagcagtccttctgaatctgatgctcagaacagaataccaaacaa
caaacgtagataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146706796_146707743
seq2: B6Ng01-119A09.b_337_1275

seq1  GCAAATGCTTTACTGTAAAAAGCAGTCTGAGAATTCATCAGAGAATTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCTTTACTGTAAAAAGCAGTCTGAGAATTCATCAGAGAATTCAT  50

seq1  ACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACCAA  100

seq1  ACAATCCAATCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCAATCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAACCTT  150

seq1  ACAAATGCAGTGAATGTGAAAAATGCTTTTCCCGAAAATTACA-TCTTGG  199
      |||||||||||||||||||||||||| |||   |||||  ||| |||   
seq2  ACAAATGCAGTGAATGTGAAAAATGC-TTTAATGAAAAAAACATTCTGAA  199

seq1  TATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGCAGTGAAT  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGCAGTGAAT  249

seq1  GTGAAAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATCAGAGAATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATCAGAGAATT  299

seq1  CATACAGGAAAGAAACCTTACAAATAGATTGTATGTGACAAATACAATAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGAAAGAAACCTTACAAATAGATTGTATGTGACAAATACAATAC  349

seq1  TCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATC  399

seq1  TTTATAAATGAAGTAAATGAGGCAATTCTTTACCAAGATATATTATCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATGAAGTAAATGAGGCAATTCTTTACCAAGATATATTATCTCA  449

seq1  AAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTA  499

seq1  GGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGAATA  549

seq1  CTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTTGA  599

seq1  CTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGTAT  649
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTCA-GTCAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGTAT  648

seq1  TTCTGTTGGGGAAAATGGTGTATTCTTGACAACACTTGAGGCTCCACACT  699
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCTGTTGGGGAAAATGGTGTATTCTTGGCAACACTTGAGGCTCCACACT  698

seq1  AGAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCATGCAATGTT  749
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  AGAGAATTAGTATGA-TATGAAAATC-TGTGAAAATATTCATGCAATGTT  746

seq1  CAAATCTTAGGTAATGTCAAC-TATTTATGCTGTGAGAAACTCTGAAAAT  798
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAAATCTTAGGTAATGTCAACTTATTTATGCTGTGAGAAACTCTGAAAAT  796

seq1  GT-GAAATG-TAGAAAGCTTTTCATGACACCTTTTTACTTGTTCATCCTC  846
      || |||||| ||||||||||||||||||||  |||||||   ||||||||
seq2  GTGGAAATGTTAGAAAGCTTTTCATGACAC--TTTTACT--GTCATCCTC  842

seq1  AAACGTTACCAGATGAAGACAAGTTGGGAAGTCAGAA--GATAGTATTTT  894
      |||||||| || ||| ||||||||| |||||||||||   || | ||| |
seq2  AAACGTTAACA-ATG-AGACAAGTT-GGAAGTCAGAAAGAATGGAATTAT  889

seq1  ATAACACTTTAATCGAGAAAGAAATAATCCATTTCAAAAGGAAAC-TATT  943
      | |||   ||||||| ||||||||||||||| ||| ||||||||| ||||
seq2  A-AAC---TTAATCG-GAAAGAAATAATCCAATTCCAAAGGAAACATATT  934

seq1  TAAGG  948
      |||||
seq2  TAAGG  939

seq1: chr4_145586471_145587639
seq2: B6Ng01-119A09.g_79_1192

seq1  GAGCTTTATGAAGGCTTTTGCAAAGGCAAACCTCCCGGTATACAAACTCC  50
      ||||||||| ||||||||||||||| ||| | |||||||| |||||||||
seq2  GAGCTTTATTAAGGCTTTTGCAAAGACAACCATCCCGGTACACAAACTCC  50

seq1  AGATGCAGCCAAGGATCTCCGAGGATATTTTAGAAAAATATTCTGGCAAC  100
      |||  | ||||||||||| | ||| |  || | ||||| | |||||||||
seq2  AGAGACGGCCAAGGATCTAC-AGGGTTATTAAAAAAAAAAATCTGGCAAC  99

seq1  CATAAAATTGATTAAAGCATCACCATGAACCCAATTCACAGGATCTCAAA  150
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  CATAAAATTAATTAAAACATCACCATGAACCCAATTCACAGGATCTCAAA  149

seq1  CTTCCTGATAATGGTAAGATATCCACAACAGAATTGTGAGAGTGGCGGCA  200
      ||||||||||||||||||||| |||||||| |||| ||||||||||||||
seq2  CTTCCTGATAATGGTAAGATA-CCACAACAAAATTATGAGAGTGGCGGCA  198

seq1  GAAAATGTACCCCTGCTCCACACACCTGCCCAGCTCCTGCCCATTTCCCA  250
      ||||| | |||||||||||||||  ||||||||||||||||| || ||||
seq2  GAAAACGCACCCCTGCTCCACACCTCTGCCCAGCTCCTGCCCGTTCCCCA  248

seq1  GTCCAACAGCTCCTCTGACCTAGAAGGTGACAGGATCAGCTGCTGAATGT  300
      ||||||||||||||||||||| ||||||||||||| |||||||| |||||
seq2  GTCCAACAGCTCCTCTGACCTGGAAGGTGACAGGACCAGCTGCTCAATGT  298

seq1  CCTAGGAGGAGCAACGGCAGCTTAAGGAAGTTTTCAGGTTCCGCAAATAC  350
      ||||||||| ||||  ||||| |||| |||||||||||||||||||| ||
seq2  CCTAGGAGGGGCAATTGCAGCCTAAGTAAGTTTTCAGGTTCCGCAAACAC  348

seq1  TGAATTGTGAGAATGGCGGCAGAAAAGGCACCCCTGCTCCACACCGCTGC  400
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAATTGTGAGAGTGGCGGCAGAAAAGGCACCCCTGCTCCACACCGCTGC  398

seq1  CCAGCTCCTGCCGGGTTCCTAGTCCAACAGCTCCTCTAACCTGGAAGATG  450
      |||||||||||| | || | ||||||||||||||||||||||||||| ||
seq2  CCAGCTCCTGCCAGTTTTCCAGTCCAACAGCTCCTCTAACCTGGAAGGTG  448

seq1  ACAGGACCAGCTCCTGGATGTCCTAGGAGGCCAGCAAAACAACTGCTTCT  500
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  ACAGGACCAGCTCCTGGATGTCCTAGGAGGCCAGCAAAACAACTGCTGGC  498

seq1  TAAGAAAGTTTTCAGGCACCGCAAATACTAGGCACTAGTCTCCCTCCATG  550
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  TAAGAAAGTTTTCAGGTACCACAAATACTAGGCACTAGTCTCCCTCCATG  548

seq1  ACTTCCTGATCACGAGGCAGCCGAGATGCAAGAAGAAAGATGAAACCGCG  600
      ||||||||| ||||||||||| ||||||||||||||||| ||||||||||
seq2  ACTTCCTGACCACGAGGCAGCTGAGATGCAAGAAGAAAGGTGAAACCGCG  598

seq1  GAACTTCCCTTC-TTTCTGCCTAGCGCCGCCTTCTGGACCCGCCCAAAAT  649
      |||||| |||||   |||||||||| || |||||||||||||||||  ||
seq2  GAACTTGCCTTCACCTCTGCCTAGCCCCTCCTTCTGGACCCGCCCACTAT  648

seq1  TCAACAGCTTCCTGGAATTCTTCTAAGCCCACCTACTTATGGGCCTTTTA  699
      ||| ||||||||||||||||||||||||||||||||||| || |||||||
seq2  TCAGCAGCTTCCTGGAATTCTTCTAAGCCCACCTACTTAGGGACCTTTTA  698

seq1  ATTAATTAGCTTCCCACTTCTTCACAGCAATGTTTGGTGTTTTGAATTTT  749
      | |||||||||| |||||||||||||||| | |||| ||||||| | |||
seq2  A-TAATTAGCTTTCCACTTCTTCACAGCAGTTTTTGTTGTTTTGGACTTT  747

seq1  TGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTG  799
      ||||||||| |||||||||||||||||||                     
seq2  TGCTTGCTTCCTTGCTTGCTTGCTTGCTT---------------------  776

seq1  CTTGCTTGCTTGCTTGCTTATTCGTTTCTTTGCTTTTAATTTGTCTTTTT  849
                             ||| ||||||||||||||| |||||||
seq2  -----------------------GTTCCTTTGCTTTTAATTTTTCTTTTT  803

seq1  CTTAAACTCATCTAATCGTGCAGGAATCCCACACTCCCCATCAGGAACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTCATCTAATCGTGCAGGAATCCCACACTCCCCATCAGGAACCA  853

seq1  C-TCCTCCAACTCTGTTGCAGGCTGCCTTCCACACAACTTCCC-AGGACC  947
      | |||||||| ||||||||| || ||||||||||||||||||| ||||||
seq2  CTTCCTCCAATTCTGTTGCAAGC-GCCTTCCACACAACTTCCCTAGGACC  902

seq1  TACTCTGCAAAGCTTCTTCACAAAGTTGCTGCCAGACTAGACCAGAGCTG  997
      |||||| || |||||||||||||||||||||||||||||||||||||| |
seq2  TACTCTACACAGCTTCTTCACAAAGTTGCTGCCAGACTAGACCAGAGCCG  952

seq1  GATGTAGTAGGACACTGCACCTGGGTTCTGAACCCTTCAGATTCAATGGA  1047
      |||||||| ||||||||||||||||||||||||||||| ||  |||  ||
seq2  GATGTAGTTGGACACTGCACCTGGGTTCTGAACCCTTCTGAAACAA-CGA  1001

seq1  TCCTGTCTAACTTCTCATATTGTGCGTGTAGCCCTCTGGGCTATAAATGC  1097
      | |||||||||||||||||||||| |||||  ||||||||||||||||||
seq2  T-CTGTCTAACTTCTCATATTGTGAGTGTA--CCTCTGGGCTATAAATGC  1048

seq1  ACAAAATTAAGCAGTCCCTTTGAATTCTGATGCTCAGAACAGATACCCAA  1147
      |||||| |||||||||| | |||| ||||||||||||||||||     | 
seq2  ACAAAA-TAAGCAGTCCTTCTGAA-TCTGATGCTCAGAACAGA-----AT  1091

seq1  AACAAACAA-AAACGTAGATAAA  1169
      | ||||||| |||||||||||||
seq2  ACCAAACAACAAACGTAGATAAA  1114