BAC Information

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BAC

Clone NameB6Ng01-119B12
Chromosome4 (Build37)
Map Location 129,895,268 - 130,028,940
singlet/doubletdoublet
Overlap geneGm853, Serinc2, Fabp3, Zcchc17
Upstream geneYars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1, Pef1, Hcrtr1, Tinagl
Downstream geneWdr57, 2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119B12.bB6Ng01-119B12.g
ACCDH923397DH923398
length1,178935
definitionDH923397|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B12, 5' end.DH923398|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,027,733 - 130,028,940)(129,895,268 - 129,896,205)
sequence
gaattctgtgtgtagccctgactgttctagagctagctctgtagaccagg
ctggcctcccatctcagagagatttccttgcctctgcctcattagtgctg
agactaaaggtgtgagccatcacttctcaggaggcatctgttttttaaaa
gttgtttttatttcctactctctggcttggtatctggcatacatagctgc
tacataaataatggaatacagctgtccctcaggctgatgctgtgacttgt
ccttgaagaaactggtccagctggaattctaggattcatctcttaacggg
cataacagggatggtggcagtgtgcagtgactgagcagatgagaagccag
catccattttcttcttgtcctctgagatcttgctgccagtgtctattaaa
catggcaggggtgtaaggatagcagtgggagctagggcttatcttagatt
caccacagactagggaaatgccggagggtgatcagtgacggtagaaatac
tgctggaggcagattaaagaacgctctgtgcctggatgcactgctctcca
actcaggacccggagttctgagcctcgggttcatcattcacattatgagg
agagcaagtttcagggccaacgcaggctcttatctaaagaaggaaagtca
ttttacccaaggcccgagtgtctgttgagataatgactgaatttctcccc
ccacctgtgctcctgagtcatttgagtgattattcttgggaccccaggaa
gactgtgtgctcatctgcggcaggtgccatcctcttaatttccactctga
cgacaccctaggagacacagaggtggagacacctggtgctggaaggcggc
aagagcgccttgcctcactgaaaggctcgaacgcttctttctgaagctca
ttaacctatccctttgggagaagcaaaattaagtctgttattacctctaa
agacgatatgcgccctggggtctcagactgagagttattttgtctaatta
cagcagcaggtggttgggccatacttctggatgctgctgtagttttcata
actgtgggtcttataatgccagttcagctgctcaacttgtcttcgaatcg
gagagcaatgtcagatgcttaagctgaaacaggagagaagaatttgcttg
tttattaaattgagacttggcctggaaa
gaattcttaatttgagtgcttatttctccagccccattttttgatttttt
taaaaaaaaaatactgtttgaaaatgtcacatatctggagtgttacattt
ctttgatattgacttcaattttgtccccaaggcctcacatcctctagact
tagaaaacacacaaagcagagttgtccctgagagtccttggttgcctaga
gatagaaataaaaatggagatagggaaggccagtgctcacttacgaggcc
cccaccacagccaaccccagctctctggcaacctggagcaggtgtccaca
tgcctccagatgggctccaaacttggtgtgcagagggaaggtgctttgac
tgtccagggtctgtatccggagaaccagcctggaggaggagagaggacag
caggggtgcacaggaactctgagaccctccaaccttcccacccatccatg
cctagttcctcccaactattcagcatagagagcaaagagcaagtacctcc
tgcttacagaattctgccaagcgagtgcaagcgggatagaatggcatcgt
taagactttctaaggaacaaggggtgtaggctgggcagtggtggtgcagg
cctttaatcgtagtacttaggaggcagaggtagtggatctctataagttt
gaggccatactggtctacagagtgagttccaggaaagccagggctacaca
gagaaaccctgtttaaaaaaacaaaaacaaaaacaaaacccaaacaaaca
aacaaaagaatcagcaatgttatacaacatatggcttatgaatctgaaat
gtaagccttggtctgactctggtataagtacttttctatgtcatcccggg
atgtcaaacctttcatgctgggctctgttctgtgttatgcagagacaagg
tcttcttgacactgatgtgttcagagaaggcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_130027733_130028940
seq2: B6Ng01-119B12.b_48_1225 (reverse)

seq1  TTTCCAGCCCCAAGTCCTCCCATTTTTAATAAAAACAAAAGCAAATGTCT  50
      |||||||  |||||| |||     ||||||||    | |||||||| |||
seq2  TTTCCAG-GCCAAGT-CTC---AATTTAATAA----ACAAGCAAAT-TCT  40

seq1  TC-CTCCTGTCTCAGCTAAAGCACTCTGACATTGCTCTCGGATTCTGAAA  99
      || ||||||| |||||| ||||| ||||||||||||||| |||||   ||
seq2  TCTCTCCTGTTTCAGCTTAAGCA-TCTGACATTGCTCTCCGATTC--GAA  87

seq1  GACAAGTTGAGCAGCCTGACACTGGCATTATTAAGGACCACAGTTATTGG  149
      |||||||||||||| |||| |||||||||| ||||  ||||||||||   
seq2  GACAAGTTGAGCAG-CTGA-ACTGGCATTA-TAAGACCCACAGTTAT---  131

seq1  AAAAAACTTAACAGCAGCATCCAGAAGTTATGGCCCAAACCACCTTGCTG  199
        ||||||  ||||||||||||||||| |||||||| ||||||| |||||
seq2  -GAAAACT--ACAGCAGCATCCAGAAG-TATGGCCC-AACCACC-TGCTG  175

seq1  CTGTAAATTAAGACAAAATAACTTCTCAGTCCTGAGACCCCAGGGCCGCA  249
      ||||||  | |||||||||||| ||||||| |||||||||||||| ||||
seq2  CTGTAA--TTAGACAAAATAAC-TCTCAGT-CTGAGACCCCAGGG-CGCA  220

seq1  TTATCGTCTTTAGAGGTAATAACAGACCTTAATTTTGCTTCTCCCAAAGG  299
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -TATCGTCTTTAGAGGTAATAACAGA-CTTAATTTTGCTTCTCCCAAAGG  268

seq1  GATAGGTTAATGAGCTTCAGAAAGAAGCGTTCGAGCC-TTCAGTGAGGCA  348
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATAGGTTAATGAGCTTCAGAAAGAAGCGTTCGAGCCTTTCAGTGAGGCA  318

seq1  AGGCGCTCTTGCCGCCTTCCAGCACCAGGTGTCTCCACCTCTGTGTCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGCTCTTGCCGCCTTCCAGCACCAGGTGTCTCCACCTCTGTGTCTCC  368

seq1  TAGGGTGTCGTCAGAGTGGAAATTAAGAGGATGGCACCTGCCGCAGATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGTCGTCAGAGTGGAAATTAAGAGGATGGCACCTGCCGCAGATGA  418

seq1  GCACACAGTCTTCCTGGGGTCCCAAGAATAATCACTCAAATGACTCAGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGTCTTCCTGGGGTCCCAAGAATAATCACTCAAATGACTCAGGA  468

seq1  GCACAGGTGGGGGGAGAAATTCAGTCATTATCTCAACAGACACTCGGGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTGGGGGGAGAAATTCAGTCATTATCTCAACAGACACTCGGGCC  518

seq1  TTGGGTAAAATGACTTTCCTTCTTTAGATAAGAGCCTGCGTTGGCCCTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAAAATGACTTTCCTTCTTTAGATAAGAGCCTGCGTTGGCCCTGA  568

seq1  AACTTGCTCTCCTCATAATGTGAATGATGAACCCGAGGCTCAGAACTCCG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTCTCCTCATAATGTGAATGATGAACCCGAGGCTCAGAACTCCG  618

seq1  GGTCCTGAGTTGGAGAGCAGTGCATCCAGGCACAGAGCGTTCTTTAATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTTGGAGAGCAGTGCATCCAGGCACAGAGCGTTCTTTAATCT  668

seq1  GCCTCCAGCAGTATTTCTACCGTCACTGATCACCCTCCGGCATTTCCCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGCAGTATTTCTACCGTCACTGATCACCCTCCGGCATTTCCCTA  718

seq1  GTCTGTGGTGAATCTAAGATAAGCCCTAGCTCCCACTGCTATCCTTACAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGTGAATCTAAGATAAGCCCTAGCTCCCACTGCTATCCTTACAC  768

seq1  CCCTGCCATGTTTAATAGACACTGGCAGCAAGATCTCAGAGGACAAGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCATGTTTAATAGACACTGGCAGCAAGATCTCAGAGGACAAGAAG  818

seq1  AAAATGGATGCTGGCTTCTCATCTGCTCAGTCACTGCACACTGCCACCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGATGCTGGCTTCTCATCTGCTCAGTCACTGCACACTGCCACCAT  868

seq1  CCCTGTTATGCCCGTTAAGAGATGAATCCTAGAATTCCAGCTGGACCAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTATGCCCGTTAAGAGATGAATCCTAGAATTCCAGCTGGACCAGT  918

seq1  TTCTTCAAGGACAAGTCACAGCATCAGCCTGAGGGACAGCTGTATTCCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAGGACAAGTCACAGCATCAGCCTGAGGGACAGCTGTATTCCAT  968

seq1  TATTTATGTAGCAGCTATGTATGCCAGATACCAAGCCAGAGAGTAGGAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTAGCAGCTATGTATGCCAGATACCAAGCCAGAGAGTAGGAAA  1018

seq1  TAAAAACAACTTTTAAAAAACAGATGCCTCCTGAGAAGTGATGGCTCACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAACTTTTAAAAAACAGATGCCTCCTGAGAAGTGATGGCTCACA  1068

seq1  CCTTTAGTCTCAGCACTAATGAGGCAGAGGCAAGGAAATCTCTCTGAGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTCTCAGCACTAATGAGGCAGAGGCAAGGAAATCTCTCTGAGAT  1118

seq1  GGGAGGCCAGCCTGGTCTACAGAGCTAGCTCTAGAACAGTCAGGGCTACA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCCAGCCTGGTCTACAGAGCTAGCTCTAGAACAGTCAGGGCTACA  1168

seq1  CACAGAATTC  1208
      ||||||||||
seq2  CACAGAATTC  1178

seq1: chr4_129895268_129896205
seq2: B6Ng01-119B12.g_69_1003

seq1  GAATTCTTAATATGAGTGCTTATTTCTCCAGCCCCATTTTTTGATTTTTT  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATTTGAGTGCTTATTTCTCCAGCCCCATTTTTTGATTTTTT  50

seq1  TAAAAAAAAAATACTGTTTGAAAATGTCACATATCTGGAGTGTTACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAATACTGTTTGAAAATGTCACATATCTGGAGTGTTACATTT  100

seq1  CTTTGATATTGACTTCAATTTTGTCCCCAAGGCCTCACATCCTCTAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATATTGACTTCAATTTTGTCCCCAAGGCCTCACATCCTCTAGACT  150

seq1  TAGAAAACACACAAAGCAGAGTTGTCCCTGAGAGTCCTTGGTTGCCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACACACAAAGCAGAGTTGTCCCTGAGAGTCCTTGGTTGCCTAGA  200

seq1  GATAGAAATAAAAATGGAGATAGGGAAGGCCAGTGCTCACTTACGAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAATAAAAATGGAGATAGGGAAGGCCAGTGCTCACTTACGAGGCC  250

seq1  CCCACCACAGCCAACCCCAGCTCTCTGGCAACCTGGAGCAGGTGTCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACAGCCAACCCCAGCTCTCTGGCAACCTGGAGCAGGTGTCCACA  300

seq1  TGCCTCCAGATGGGCTCCAAACTTGGTGTGCAGAGGGAAGGTGCTTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAGATGGGCTCCAAACTTGGTGTGCAGAGGGAAGGTGCTTTGAC  350

seq1  TGTCCAGGGTCTGTATCCGGAGAACCAGCCTGGAGGAGGAGAGAGGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGGTCTGTATCCGGAGAACCAGCCTGGAGGAGGAGAGAGGACAG  400

seq1  CAGGGGTGCACAGGAACTCTGAGACCCTCCAACCTTCCCACCCATCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTGCACAGGAACTCTGAGACCCTCCAACCTTCCCACCCATCCATG  450

seq1  CCTAGTTCCTCCCAACTATTCAGCATAGAGAGCAAAGAGCAAGTACCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTCCTCCCAACTATTCAGCATAGAGAGCAAAGAGCAAGTACCTCC  500

seq1  TGCTTACAGAATTCTGCCAAGCGAGTGCAAGCGGGATAGAATGGCATCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACAGAATTCTGCCAAGCGAGTGCAAGCGGGATAGAATGGCATCGT  550

seq1  TAAGACTTTCTAAGGAACAAGGGGTGTAGGCTGGGCAGTGGTGGTGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTTCTAAGGAACAAGGGGTGTAGGCTGGGCAGTGGTGGTGCAGG  600

seq1  CCTTTAATCGTAGTACTTAGGAGGCAGAGGTAGTGGATCTCTATAAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCGTAGTACTTAGGAGGCAGAGGTAGTGGATCTCTATAAGTTT  650

seq1  GAGGCCATACTGGTCTACAGAGTGAGTTCCAGGAAAGCCAGGGCTACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATACTGGTCTACAGAGTGAGTTCCAGGAAAGCCAGGGCTACACA  700

seq1  GAGAAACCCTGTTTAAAAAAACAAAAACAAAAACAAAACCCAAACAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTTTAAAAAAACAAAAACAAAAACAAAACCCAAACAAACA  750

seq1  AACAAAAGAATCAGCAATGTTATACAACATATGGCTTATGAATCTGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGAATCAGCAATGTTATACAACATATGGCTTATGAATCTGAAAT  800

seq1  GTAAGCCTTGGTCTGACTCTGGTATAAGTACTTTTCCTATGTCAT-CCGG  849
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  GTAAGCCTTGGTCTGACTCTGGTATAAGTACTTTT-CTATGTCATCCCGG  849

seq1  GATGTCAGACCTTCTCATGCTGGGCTCTGTCCTGTGTCTATGCAGAGACA  899
      ||||||| ||||| |||||||||||||||| |||||| ||||||||||||
seq2  GATGTCAAACCTT-TCATGCTGGGCTCTGTTCTGTGT-TATGCAGAGACA  897

seq1  AGGTCTTCTTGACACTGATGTGTTCCAGAGAAGGCATTG  938
      |||||||||||||||||||||||| ||||||||||||||
seq2  AGGTCTTCTTGACACTGATGTGTT-CAGAGAAGGCATTG  935