BAC Information

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BAC

Clone NameB6Ng01-119I18
Chromosome4 (Build37)
Map Location 36,731,647 - 36,852,222
singlet/doubletdoublet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119I18.bB6Ng01-119I18.g
ACCDH923732DH923733
length1,1201,061
definitionDH923732|Mus musculus domesticus DNA, BAC clone: B6Ng01-119I18, 5' end.DH923733|Mus musculus domesticus DNA, BAC clone: B6Ng01-119I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,731,647 - 36,732,782)(36,851,148 - 36,852,222)
sequence
gaattctaaggagaatttctatgggtcatttgtaatttctttgttggaag
aagatgttattacaatttttagaaccaccttatccacactcacctctcct
ttattagcagaggctgattctagcctagcagtttgacttctaatctgtgt
taaaatatttggacaggaaaaaactatagccaatgaaaatcacagaatag
cattgtgaaacctggatgacacatgagaatagtgaaccaaatgtcagagt
acaagttcggaacccatcaaaactgcatcataaaggaaaccactttaaat
ttacatcataattaaaaactaaaacccctattcttctattctcatatcat
ttctacccctacctaggtgctttccaagacaatccattgggaaagctgtg
ttttccattgtattggttcctgaattctctataggttcatattttattct
actatcctgcattttcaaccttcttctgggttgatcctgaaaggaagacc
ttcttccatggggttgtatctgttttacttattgctactcttatcttgaa
aaacaagagaagcccaatcttgaaaataagtttctgacttgagttgtgac
tttgaatttttttgacttctattaaaaactgtgttatccagctatttata
gggcttttatttatgatgactgctatttggcatatagatgaggttgaaat
gttttaataactggaaacactatcattatcacaccaattcacagcaaatg
attcactaaaatttgagtcaaaaggtttaattcatggtttgggtactgac
tcacgtgtaagctggactaagatgccaaatgcaacctataattgtttcat
catatgaaagggaagacgattttccctgcactgatttcagtgggatcatg
agagtaaagggtcactagtcagatatactggctgaagttacaataacaaa
ataaatgccattaccttatatgcatgctttatagatcattgtgtgaacta
catatcatactttctacagttatgagaaattgtgataccctctattcgta
ataaacagtgtatataaaattgttgaaaagactctactataaatgtaaga
aattaattaaatatctttaa
gaattctttttcagttctgagccccatttttaatggggttatttgatttt
ctgcagtccacctacttgagttctttatatatattggatattaatcccct
acctgatttaggataggtaaagatcctttcccaatctgttggtggtcttt
ttgtcttattgacggtatcttttgcctttcagaagctttgcagtttcatg
aggtcccatttgtcaattctcgatcttacagcgcaagccattgctgttct
attcaggaatttttcccctatgcccatatctttgaggcttttccccactt
tctcctctataagtttcagtgtctctggttttatttgcatttcacctttt
taacaaaattggctaacatttcattgtgcaaatgtatcccatttctccat
tcttctgttgatggatacctaggttgcttcctgtttctagcctttctaaa
gagtatgctcaggtttttaaatgtgattcagactcagtcccttgttcctg
tatagcaagtgctgattcacttccccagctccaactgcaaaggtttttgc
cattcatgtagacagtataaagtgtaccttgaagtgtagttacaacctgc
ctgccactccacagtctgccttaatcttcatgtgtttttttttaaacaga
ttttattgaatttagtcatagtcagaaaaatatgtaacttcagtagattt
ttaggctctatctttttaaaaaatactttatcttgtattatatgtatgca
tattgatctgtctatatgtttgcaaatacgcatttaggtccccaagaagc
cagaaaatggcctcagatatactgggtctagagccacatgtgaatttgat
atgcctgaaatagctgtaggaaacaaaattgtgaacttctgaaagagagt
atgtgactctaactcctgagccatgttcataacactcaattttattcata
ataaataatagtttgggtagtttcctcagacatgggatgtatgtattaga
ttatgtatctttttaaatgttagtgaagactgaatagttttaaaatgatt
ttacatagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36731647_36732782
seq2: B6Ng01-119I18.b_43_1162

seq1  GAATTCTAAGGAGAATTTCTATGGGTCATTTGTAATTTCTTTGTTGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGAGAATTTCTATGGGTCATTTGTAATTTCTTTGTTGGAAG  50

seq1  AAGATGTTATTACAATTTTTAGAACCACCTTATCCACACTCACCTCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTATTACAATTTTTAGAACCACCTTATCCACACTCACCTCTCCT  100

seq1  TTATTAGCAGAGGCTGATTCTAGCCTAGCAGTTTGACTTCTAATCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGCAGAGGCTGATTCTAGCCTAGCAGTTTGACTTCTAATCTGTGT  150

seq1  TAAAATATTTGGACAGGAAAAAACTATAGCCAATGAAAATCACAGAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTTGGACAGGAAAAAACTATAGCCAATGAAAATCACAGAATAG  200

seq1  CATTGTGAAACCTGGATGACACATGAGAATAGTGAACCAAATGTCAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGAAACCTGGATGACACATGAGAATAGTGAACCAAATGTCAGAGT  250

seq1  ACAAGTTCGGAACCCATCAAAACTGCATCATAAAGGAAACCACTTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTCGGAACCCATCAAAACTGCATCATAAAGGAAACCACTTTAAAT  300

seq1  TTACATCATAATTAAAAACTAAAACCCCTATTCTTCTATTCTCATATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCATAATTAAAAACTAAAACCCCTATTCTTCTATTCTCATATCAT  350

seq1  TTCTACCCCTACCTAGGTGCTTTCCAAGACAATCCATTGGGAAAGCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCCCTACCTAGGTGCTTTCCAAGACAATCCATTGGGAAAGCTGTG  400

seq1  TTTTCCATTGTATTGGTTCCTGAATTCTCTATAGGTTCATATTTTATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTGTATTGGTTCCTGAATTCTCTATAGGTTCATATTTTATTCT  450

seq1  ACTATCCTGCATTTTCAACCTTCTTCTGGGTTGATCCTGAAAGGAAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCTGCATTTTCAACCTTCTTCTGGGTTGATCCTGAAAGGAAGACC  500

seq1  TTCTTCCATGGGGTTGTATCTGTTTTACTTATTGCTACTCTTATCTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCATGGGGTTGTATCTGTTTTACTTATTGCTACTCTTATCTTGAA  550

seq1  AAACAAGAGAAGCCCAATCTTGAAAATAAGTTTCTGACTTGAGTTGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAGAAGCCCAATCTTGAAAATAAGTTTCTGACTTGAGTTGTGAC  600

seq1  TTTGAATTTTTTTGACTTCTATTAAAAACTGTGTTATCCAGCTATTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTTTTTGACTTCTATTAAAAACTGTGTTATCCAGCTATTTATA  650

seq1  GGGCTTTTATTTATGATGACTGCTATTTGGCATATAGATGAGGTTGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTATTTATGATGACTGCTATTTGGCATATAGATGAGGTTGAAAT  700

seq1  GTTTTAATAACTGGAAACACTATCATTATCACACCAATTCACAGCAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATAACTGGAAACACTATCATTATCACACCAATTCACAGCAAATG  750

seq1  ATTCACTAAAATTTGAGTCAAAAGGTTTAATTCATGGTTTGGGTACTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTAAAATTTGAGTCAAAAGGTTTAATTCATGGTTTGGGTACTGAC  800

seq1  TCACGTGTAAGCTGGACTAAGATGCCAAATGCAACCTATAATTGTTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGTAAGCTGGACTAAGATGCCAAATGCAACCTATAATTGTTTCAT  850

seq1  CATATGAAAGGGAAGACGATTTTCCCTGCACTGATTTCAGTGGGATCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAAAGGGAAGACGATTTTCCCTGCACTGATTTCAGTGGGATCATG  900

seq1  AGAGTAAAGGGTCACTAGTCAGATATACTGGCTGAAGTTACAATAACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAGGGTCACTAGTCAGATATACTGGCTGAAGTTACAATAACAAA  950

seq1  ATAAATGCCATTACCTTAATATGCATGCTTTATAAGATCATTGTGTGAAC  1000
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  ATAAATGCCATTACCTT-ATATGCATGCTTTAT-AGATCATTGTGTGAAC  998

seq1  TACATATTCAATACTTTCTACAGTTTATGAGAAATTGTGATTACCCTCTA  1050
      |||||||   ||||||||||||| |||||||||||||||| |||||||||
seq2  TACATAT--CATACTTTCTACAG-TTATGAGAAATTGTGA-TACCCTCTA  1044

seq1  TTCGTTAAATAAACCAGTGTATATAAAAATTGTTTGAAAAAGACTCTACC  1100
      |||||  |||||| |||||||||| |||||||||   ||||||||||| |
seq2  TTCGT--AATAAA-CAGTGTATAT-AAAATTGTT--GAAAAGACTCTA-C  1087

seq1  TATTAAATTGTAAGACATTAAATAAAATATCTTTAA  1136
      |||  || ||||||| ||| ||| ||||||||||||
seq2  TAT--AAATGTAAGAAATT-AATTAAATATCTTTAA  1120

seq1: chr4_36851148_36852222
seq2: B6Ng01-119I18.g_66_1126 (reverse)

seq1  TTACTATGTACAAATCAATTTTTAAAAAACTATTCAGTTCTTCAACTACA  50
      |||||||||| |||||| |||    |||||||||||| ||||| ||||  
seq2  TTACTATGTA-AAATCATTTT----AAAACTATTCAG-TCTTC-ACTAAC  43

seq1  TTTTAAAAAGATACATAATCTTAAATACAATTACATCCCATGTCTTGAGG  100
       ||||||||||||||||||||  ||||||  ||||||||||||| |||||
seq2  ATTTAAAAAGATACATAATCT--AATACA--TACATCCCATGTC-TGAGG  88

seq1  AAACTAACCCAAACTATTATTTATTATGAATAAAATTTGAGTGTTATGGA  150
      ||||| ||||||||||||||||||||||||||||| |||||||||||| |
seq2  AAACT-ACCCAAACTATTATTTATTATGAATAAAA-TTGAGTGTTATGAA  136

seq1  CATGGCTCAGGAGTTAGAGTCACATACTTCTCTTTCAG-AGTTCACAATT  199
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  CATGGCTCAGGAGTTAGAGTCACATAC-TCTCTTTCAGAAGTTCACAATT  185

seq1  TTGTTTCCTACAGCTATGTCAGGCATATCAAATTCACATGTGGCTCTAGA  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTACAGCTATTTCAGGCATATCAAATTCACATGTGGCTCTAGA  235

seq1  CCCAGTATATCTGAGGCCATTTTCTGGCTTCTTGGGGACCTAAATGCGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTATATCTGAGGCCATTTTCTGGCTTCTTGGGGACCTAAATGCGTA  285

seq1  TTTGCAAACATATAGACAGATCAATATGCATACATATAATACAAGATAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAACATATAGACAGATCAATATGCATACATATAATACAAGATAAA  335

seq1  GTATTTTTTAAAAAGATAGAGCCTAAAAATCTACTGAAGTTACATATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTAAAAAGATAGAGCCTAAAAATCTACTGAAGTTACATATTTT  385

seq1  TCTGACTATGACTAAATTCAATAAAATCTGTTTAAAAAAAAACACATGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTATGACTAAATTCAATAAAATCTGTTTAAAAAAAAACACATGAA  435

seq1  GATTAAGGCAGACTGTGGAGTGGCAGGCAGGTTGTAACTACACTTCAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGGCAGACTGTGGAGTGGCAGGCAGGTTGTAACTACACTTCAAGG  485

seq1  TACACTTTATACTGTCTACATGAATGGCAAAAACCTTTGCAGTTGGAGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTATACTGTCTACATGAATGGCAAAAACCTTTGCAGTTGGAGCT  535

seq1  GGGGAAGTGAATCAGCACTTGCTATACAGGAACAAGGGACTGAGTCTGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGTGAATCAGCACTTGCTATACAGGAACAAGGGACTGAGTCTGAA  585

seq1  TCACATTTAAAAACCTGAGCATACTCTTTAGAAAGGCTAGAAACAGGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTAAAAACCTGAGCATACTCTTTAGAAAGGCTAGAAACAGGAAG  635

seq1  CAACCTAGGTATCCATCAACAGAAGAATGGAGAAATGGGATACATTTGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAGGTATCCATCAACAGAAGAATGGAGAAATGGGATACATTTGCA  685

seq1  CAATGAAATGTTAGCCAATTTTGTTAAAAAGGTGAAATGCAAATAAAACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAATGTTAGCCAATTTTGTTAAAAAGGTGAAATGCAAATAAAACC  735

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCAAAGATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCAAAGATA  785

seq1  TGGGCATAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGCGCTGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGCGCTGTA  835

seq1  AGATCGAGAATTGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGAAA  885

seq1  GGCAAAAGATACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGATACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  935

seq1  GGATCTTTACCTATCCTAAATCAGGTAGGGGATTAATATCCAATATATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGGTAGGGGATTAATATCCAATATATAT  985

seq1  AAAGAACTCAAGTAGGTGGACTGCAGAAAATCAAATAACCCCATTAAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCAAGTAGGTGGACTGCAGAAAATCAAATAACCCCATTAAAAA  1035

seq1  TGGGGCTCAGAACTGAAAAAGAATTC  1075
      ||||||||||||||||||||||||||
seq2  TGGGGCTCAGAACTGAAAAAGAATTC  1061