BAC Information

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BAC

Clone NameB6Ng01-119O06
Chromosome4 (Build37)
Map Location 135,873,682 - 136,026,305
singlet/doubletdoublet
Overlap geneHnrpr, Htr1d, LOC100042540, Luzp1
Upstream geneSrrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46
Downstream geneAof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119O06.bB6Ng01-119O06.g
ACCDH923982DH923983
length1,111465
definitionDH923982|Mus musculus domesticus DNA, BAC clone: B6Ng01-119O06, 5' end.DH923983|Mus musculus domesticus DNA, BAC clone: B6Ng01-119O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,873,682 - 135,874,811)(136,025,835 - 136,026,305)
sequence
gaattcatatgtaaagtaactaccttccccggtcattattattattatta
acttagataaattgctttgaaagtcaaaaaggcttttcctaaaagacctt
gttaaaggggttttgtcaaggttgcagtggtggggacctaatccagggct
ttacacatgctaatcaagtgctctatcctaagctgtccttaaagatttaa
ttggaatggtattgagttttagagttgtttgccctggtgactcaggcttg
ggtataactaactttgtaaagtgcctttatacttttctcctccattctca
tctgtttataaactgatctagccccattcttaaacaaatgccaaactact
gtgtaacaaccctgattggctgactaacccccttcccctggtagaaaaat
ggaaggttcaagacattcttccctgtggaatcccagggttaactaactct
aacaaacatgaatctgctggtgctctttgtaattacatacctaacatgca
gagcccttctctttcttggtagagtgcatattttgtttgccaacaaaaga
tattctatagacctttcatatgaaatttcatacgaatgttatctatcgtg
caagctttttgagggcaagaacattgtttctgtgacctctgttagttagt
gttagtgaggtggaatcaaataatgattctttttgttttgtttttcgaga
cagggtttctctgtgtagccctggctgtcctggaactcactttgtagatc
aggctggcctcgaactcagaaatccgcctgcctctcctcccgagtgctgg
gattaaaggcatgcgccaccatgcccggctctcaaataatgattcatgtt
ttgaaatcagagtatatttatttggaagtttccaaatttagagtatcctg
tgagatattccagttgtgttgagcttgtagcttggtagagtatgaagcag
acaaatggagtagttaaaggcagttgtgggctgccatgtgtactggaaca
aactccgagtctgcagagcagcagtgcgctttagttcagagcatctcttc
agcgtctcttcaaagtttactcttgttataattgttatgtgtttgtttgg
aggtgggtttg
cttcccgggccgcggcggtctggcccgcgagacgggagcagcgcgccggc
gggagccgcgcgggcgggcgggcgggccgcagccccggggccgacagctg
cggacgccccggggccgccgcgggcctctccccggccccccgcgcgtcgc
gtcccgcacaccggccgcggcccttcctgtccgctcacttccttcctccc
ggctcgccgccccgcggagcccggcgaggaccccgacgcctccctccctg
gccgccacagccgcgctcgccctcactcggcgtctccccagtctcctcag
aaacgtccctccccctcttcaggaagaaaaaaaaatctctgagtctctcc
ctctaactccagccacattctctccggctggcccaccggagacctccctt
ttcctgttccgcttccagaaccctttcgtacttccttccgttttcgggac
accccggttgagacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_135873682_135874811
seq2: B6Ng01-119O06.b_49_1159

seq1  GAATTCATATGTAAAGTAACTACCTTCCCCGGTCATTATTATTATTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGTAAAGTAACTACCTTCCCCGGTCATTATTATTATTATTA  50

seq1  ACTTAGATAAATTGCTTTGAAAGTCAAAAAGGCTTTTCCTAAAAGACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGATAAATTGCTTTGAAAGTCAAAAAGGCTTTTCCTAAAAGACCTT  100

seq1  GTTAAAGGGGTTTTGTCAAGGTTGCAGTGGTGGGGACCTAATCCAGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGGGGTTTTGTCAAGGTTGCAGTGGTGGGGACCTAATCCAGGGCT  150

seq1  TTACACATGCTAATCAAGTGCTCTATCCTAAGCTGTCCTTAAAGATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATGCTAATCAAGTGCTCTATCCTAAGCTGTCCTTAAAGATTTAA  200

seq1  TTGGAATGGTATTGAGTTTTAGAGTTGTTTGCCCTGGTGACTCAGGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGGTATTGAGTTTTAGAGTTGTTTGCCCTGGTGACTCAGGCTTG  250

seq1  GGTATAACTAACTTTGTAAAGTGCCTTTATACTTTTCTCCTCCATTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAACTAACTTTGTAAAGTGCCTTTATACTTTTCTCCTCCATTCTCA  300

seq1  TCTGTTTATAAACTGATCTAGCCCCATTCTTAAACAAATGCCAAACTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTATAAACTGATCTAGCCCCATTCTTAAACAAATGCCAAACTACT  350

seq1  GTGTAACAACCCTGATTGGCTGACTAACCCCCTTCCCCTGGTAGAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACAACCCTGATTGGCTGACTAACCCCCTTCCCCTGGTAGAAAAAT  400

seq1  GGAAGGTTCAAGACATTCTTCCCTGTGGAATCCCAGGGTTAACTAACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTCAAGACATTCTTCCCTGTGGAATCCCAGGGTTAACTAACTCT  450

seq1  AACAAACATGAATCTGCTGGTGCTCTTTGTAATTACATACCTAACATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACATGAATCTGCTGGTGCTCTTTGTAATTACATACCTAACATGCA  500

seq1  GAGCCCTTCTCTTTCTTGGTAGAGTGCATATTTTGTTTGCCAACAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTTCTCTTTCTTGGTAGAGTGCATATTTTGTTTGCCAACAAAAGA  550

seq1  TATTCTATAGACCTTTCATATGAAATTTCATACGAATGTTATCTATCGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATAGACCTTTCATATGAAATTTCATACGAATGTTATCTATCGTG  600

seq1  CAAGCTTTTTGAGGGCAAGAACATTGTTTCTGTGACCTCTGTTAGTTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTTTGAGGGCAAGAACATTGTTTCTGTGACCTCTGTTAGTTAGT  650

seq1  GTTAGTGAGGTGGAATCAAATAATGATTCTTTTTGTTTTGTTTTTCGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGAGGTGGAATCAAATAATGATTCTTTTTGTTTTGTTTTTCGAGA  700

seq1  CAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATC  750

seq1  AGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTCCTCCCGAGTGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTCCTCCCGAGTGCTGG  800

seq1  GATTAAAGGCATGCGCCACCATGCCCGGCTCTCAAATAATGATTCATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCATGCGCCACCATGCCCGGCTCTCAAATAATGATTCATGTT  850

seq1  TTGAAATCAGAGTATATTTATTTGGAAGTTTCCAAATTTAGAGTATCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCAGAGTATATTTATTTGGAAGTTTCCAAATTTAGAGTATCCTG  900

seq1  TGAGATATTCCAGTTGTGTTGAGCTTGTAGCTTGGTAAGAGTATGAAGCA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGAGATATTCCAGTTGTGTTGAGCTTGTAGCTTGGT-AGAGTATGAAGCA  949

seq1  GACAAATGGAGTAGTTAAGGGCAGTTGTGGGCTGCCATGTGTACTGGGAA  1000
      |||||||||||||||||| ||||||||||||||||||||||||||||  |
seq2  GACAAATGGAGTAGTTAAAGGCAGTTGTGGGCTGCCATGTGTACTGG--A  997

seq1  CCAAACTCCGAAGGTCTGCAAGAGCAGCAGGTGCGCTTTAGTTCAGAGCC  1050
       ||||||||||  |||||| ||||||||| |||||||||||||||||| |
seq2  ACAAACTCCGA--GTCTGC-AGAGCAGCA-GTGCGCTTTAGTTCAGAG-C  1042

seq1  ATCTCTCCAGCCGTCCTCTTTTAAATAGTTTACTCTTGTTTTTAATTATA  1100
      |||||| |||    | ||| || || |||||||||||| || ||||| | 
seq2  ATCTCTTCAG----CGTCTCTTCAA-AGTTTACTCTTG-TTATAATTGT-  1085

seq1  TGTATATGTGTTTGTTTGAGTGTGGGTTTG  1130
          ||||||||||||||   |||||||||
seq2  ----TATGTGTTTGTTTGGAGGTGGGTTTG  1111

seq1: chr4_136025835_136026305
seq2: B6Ng01-119O06.g_70_540 (reverse)

seq1  GGTCTCGGCCGGGGTGTCCCGGGGACGGCGGGGAGTGCGCGCGGGTTCTG  50
      ||||||  |||||||||||||   ||||  || ||| ||   ||||||||
seq2  GGTCTCAACCGGGGTGTCCCGAAAACGGAAGGAAGTACGAAAGGGTTCTG  50

seq1  GAAGCGGAGCCGGGAAGGGGAGGTCTCCGGTGGGCCAGCCGGAGAGAGTG  100
      |||||||| | || || |||||||||||||||||||||||||||||| ||
seq2  GAAGCGGAACAGGAAAAGGGAGGTCTCCGGTGGGCCAGCCGGAGAGAATG  100

seq1  TGGCTGGAGTTGGAGGGAGAGACTCAGAGATTTTTTTTTCTTCCTGAGGA  150
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  TGGCTGGAGTTAGAGGGAGAGACTCAGAGATTTTTTTTTCTTCCTGAAGA  150

seq1  GGGGGAGGGACGTTTCTGAGGAGACTGGGGAGACGCCGAGTGAGGGCGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGACGTTTCTGAGGAGACTGGGGAGACGCCGAGTGAGGGCGAG  200

seq1  CGCGGCTGTGGCGGCCAGGGAGGGAGGCGTCGGGGTCCTCGCCGGGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGCTGTGGCGGCCAGGGAGGGAGGCGTCGGGGTCCTCGCCGGGCTCC  250

seq1  GCGGGGCGGCGAGCCGGGAGGAAGGAAGTGAGCGGACAGGAAGGGCCGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGCGGCGAGCCGGGAGGAAGGAAGTGAGCGGACAGGAAGGGCCGCG  300

seq1  GCCGGTGTGCGGGACGCGACGCGCGGGGGGCCGGGGAGAGGCCCGCGGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGTGTGCGGGACGCGACGCGCGGGGGGCCGGGGAGAGGCCCGCGGCG  350

seq1  GCCCCGGGGCGTCCGCAGCTGTCGGCCCCGGGGCTGCGGCCCGCCCGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGGGGCGTCCGCAGCTGTCGGCCCCGGGGCTGCGGCCCGCCCGCCC  400

seq1  GCCCGCGCGGCTCCCGCCGGCGCGCTGCTCCCGTCTCGCGGGCCAGACCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCGCGGCTCCCGCCGGCGCGCTGCTCCCGTCTCGCGGGCCAGACCG  450

seq1  CCGCGGCCCGGGAAGGAATTC  471
      |||||||||||||||||||||
seq2  CCGCGGCCCGGGAAGGAATTC  471