BAC Information

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BAC

Clone NameB6Ng01-120A23
ChromosomeX (Build37)4 (Build37)
Map Location 81,499,744 - 81,500,26137,767,425 - 37,768,051
singlet/doubletsingletsinglet
Overlap geneDmd
Upstream geneTsga8
Downstream geneLOC100042306, LOC100042296, LOC669833, 1600014K23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120A23.bB6Ng01-120A23.g
ACCDH924105DH924106
length978881
definitionDH924105|Mus musculus domesticus DNA, BAC clone: B6Ng01-120A23, 5' end.DH924106|Mus musculus domesticus DNA, BAC clone: B6Ng01-120A23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,499,744 - 81,500,261)(37,767,425 - 37,768,051)
sequence
gaattccccacctggagatacatcctatatacagtcaccaaactcataca
ctattgtggatgccaagaattgcatgctggcatgagcctgatatagctgt
ctcctgagagtctttgccagatcctaacaaatacagaggcagatgctcac
agccaaccatggaactgagcactgggtccccaatggtggaattagagaaa
ggactgaaagagcttaaggggtttgcaaccccataggaagaacaacaata
tcaaccaaccagatatcccaggatctaaaccaccaaccaaggagtacaca
tggaggaacccatgactaaagctgcatatgtagcacagaatggccttgct
gggcatcagagggagaagaggacctttgtctcatgaaggcttagtgtccc
agagtaggggaatacgagggtgagtagtcgggagggcatgggtgggtggg
tgtacaccctcatagaacaggaagaggaggatggcatagggggttgctgg
agctacaattgtgaaaggggataacatttgaaatgtttataaataaaata
tccaataaaaataaatacgtaaattttttcacatgaaaaggtttggtatt
gtattttataatcagagagccagtcttcacaatagtcataataggctatc
tttgaaaattaagaagtagtattttttatgaattaatttttaggcttgca
taattagaactaggtggggttaagaagtagtatagctatgtttcaacaaa
tagattgtggtgcttttcactagccacatgaggctcatcaattctgtatt
agaaataagtacctccacatagagaggtataatgctttgatttgataatt
acaataactcctagatttcttttcacttcactaaatattggaatataata
agaatttgggcactatctattcccatgccattaaagtaaaaaaaaaaaaa
atctatactttaataattaatctaatgt
gaattctgtttacaaagcaatttggttttataaaactaaataatagcaac
agttatatgtttatggttcattctcacaatttttacatgagcagtaatgc
tgtctgaacccctctatttgtctaaaactacatatatacatggtaatttt
agcagccattagaatgatgatatcctcagttttgtaggcaaatgaatgga
actagaaaataacatcctgaatgagataactcagacccaaaagaacatgt
acaatatgtactctcttgtaagtggatattagttaaaaaaaaaaaaggac
aaaataacctagacacagtccacagaactcaaaagctaaaagacccaaat
aaggatgtctcgggcccacttgggagggaaaagaaagcaatcacaaggtg
ggagggagagaggaaactgaagggaagagaggaacatgatgtggcattgg
gtgggagaaaagaactgaagccctgagggccagcagaaagaatggaaata
ggcagatttgggaggtaagaggttgaggggaccctctagaataaatagga
gacccagaaaataaaagactctcaggcctcaaacggagggaccctagatg
aagtgcactacagtggagagataaaatgtatagagcccatctcaagcaga
aagactgcatcaagtgaaagatgggattgttattccacagtcaaaactga
tccataattgttcctgtctgaaagaactacagggatggaaatggagatca
gcctgaggaaaaggaggtcccaaaaaaaaactaacaagcagcagaaagag
tcagatgcagatatttgcacctaactgatgtagagaaactgctgacccct
gtggttgaattagggaaagctggaagaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_81499744_81500261
seq2: B6Ng01-120A23.b_138_609 (reverse)

seq1  TATTTTTATTGGATATTTTCTCTTTTTATCTTTTTATTGAATATATTCTT  50
      |||||||||||||||                |||||||   ||||     
seq2  TATTTTTATTGGATA----------------TTTTATT---TATA-----  26

seq1  TATTTTTCAAATGTTGTCCCCCTTCCCAGTTTCCACCCCTGAAACCCCCT  100
       |  ||||||||||| ||||| ||| || ||    | || | ||||||||
seq2  AACATTTCAAATGTTATCCCCTTTCACAATTGTAGCTCCAGCAACCCCCT  76

seq1  ATCCCATCCACCCTCCCCCTGCTTCTATGAGTGTGT-CCCCCCCCCACC-  148
      || ||||||  ||||  |||| ||||||||| |||| | ||| |||||| 
seq2  ATGCCATCC-TCCTCTTCCTG-TTCTATGAGGGTGTACACCCACCCACCC  124

seq1  -TACCCTCTCCTCCTACCCTCCCTGGCATTCCCCTACACTGGGGCATGGA  197
       | ||||| ||  |||| | |||| | |||||||||| ||||| ||   |
seq2  ATGCCCTC-CCGACTACTCACCCTCGTATTCCCCTACTCTGGGACACTAA  173

seq1  GCTTTCACAGGACCAAAGGCATCTCCTCCCATTGATGTCCAACAAGGCCA  247
      || ||||   ||| || | | ||| |||||  ||||| ||| ||||||||
seq2  GCCTTCATGAGACAAAGGTCCTCTTCTCCCTCTGATGCCCAGCAAGGCCA  223

seq1  TCCTCTGCTACACATGCAGCTGGAGCCACAAGACCCTCCATATGTACAAT  297
      | || ||||||| ||||||||  || ||   |  ||||||| |||||   
seq2  TTCTGTGCTACATATGCAGCTTTAGTCATGGGTTCCTCCATGTGTACTCC  273

seq1  TTGGTTGGTGGTTTAGAGTCTGAGAGCTCTTGGGGGGGTCTGGTTGGTTG  347
      |||||||||||||||||  ||           |||   ||||||||||||
seq2  TTGGTTGGTGGTTTAGATCCT-----------GGGATATCTGGTTGGTTG  312

seq1  ATATTGTTGTTCTTCCTATGGGGCTGCAAACCCCTTCAGCCCTGCCAGT-  396
      ||||||||||||||||||||||| |||||||||||| ||| ||  |||| 
seq2  ATATTGTTGTTCTTCCTATGGGGTTGCAAACCCCTTAAGCTCTTTCAGTC  362

seq1  CTTTTTCTAACTCCTCTATTGGGGACCCTATTTGAGACCCTGCGCTCCGT  446
      |||| ||||| ||| | ||||||            ||||| | |||| ||
seq2  CTTTCTCTAATTCCACCATTGGG------------GACCCAGTGCTCAGT  400

seq1  TCAATGACTGGCTGCAAGTGTCTGCCTATATATTTGTCAGACACTGACAG  496
      || |||  ||||||  ||  ||||||| | ||||||| ||   ||| || 
seq2  TCCATGGTTGGCTGTGAGCATCTGCCTCTGTATTTGTTAGGATCTGGCAA  450

seq1  AGCCTCTCAGGAGACAGCTATA  518
      || |||||||||||||||||||
seq2  AGACTCTCAGGAGACAGCTATA  472

seq1: chr4_37767425_37768051
seq2: B6Ng01-120A23.g_63_689

seq1  GAATTCTGTTTACAAAGCAATTTGGTTTTATAAAACTAAATAATAGCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTACAAAGCAATTTGGTTTTATAAAACTAAATAATAGCAAC  50

seq1  AGTTATATGTTTATGGTTCATTCTCACAATTTTTACATGAGCAGTAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATGTTTATGGTTCATTCTCACAATTTTTACATGAGCAGTAATGC  100

seq1  TGTCTGAACCCCTCTATTTGTCTAAAACTACATATATACATGGTAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAACCCCTCTATTTGTCTAAAACTACATATATACATGGTAATTTT  150

seq1  AGCAGCCATTAGAATGATGATATCCTCAGTTTTGTAGGCAAATGAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCATTAGAATGATGATATCCTCAGTTTTGTAGGCAAATGAATGGA  200

seq1  ACTAGAAAATAACATCCTGAATGAGATAACTCAGACCCAAAAGAACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAAATAACATCCTGAATGAGATAACTCAGACCCAAAAGAACATGT  250

seq1  ACAATATGTACTCTCTTGTAAGTGGATATTAGTTAAAAAAAAAAAAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGTACTCTCTTGTAAGTGGATATTAGTTAAAAAAAAAAAAGGAC  300

seq1  AAAATAACCTAGACACAGTCCACAGAACTCAAAAGCTAAAAGACCCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACCTAGACACAGTCCACAGAACTCAAAAGCTAAAAGACCCAAAT  350

seq1  AAGGATGTCTCGGGCCCACTTGGGAGGGAAAAGAAAGCAATCACAAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTCTCGGGCCCACTTGGGAGGGAAAAGAAAGCAATCACAAGGTG  400

seq1  GGAGGGAGAGAGGAAACTGAAGGGAAGAGAGGAACATGATGTGGCATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGAGAGGAAACTGAAGGGAAGAGAGGAACATGATGTGGCATTGG  450

seq1  GTGGGAGAAAAGAACTGAAGCCCTGAGGGCCAGCAGAAAGAATGGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGAAAAGAACTGAAGCCCTGAGGGCCAGCAGAAAGAATGGAAATA  500

seq1  GGCAGATTTGGGAGGTAAGAGGTTGAGGGGACCCTCTAGAATAAATAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATTTGGGAGGTAAGAGGTTGAGGGGACCCTCTAGAATAAATAGGA  550

seq1  GACCCAGAAAATAAAAGACTCTCAGGCCTCAAACGGAGGGACCCTAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGAAAATAAAAGACTCTCAGGCCTCAAACGGAGGGACCCTAGATG  600

seq1  AAGTGCACTACAGTGGAGAGATAAAAT  627
      |||||||||||||||||||||||||||
seq2  AAGTGCACTACAGTGGAGAGATAAAAT  627