BAC Information

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BAC

Clone NameB6Ng01-120K13
Chromosome4 (Build37)
Map Location 107,283,419 - 107,391,038
singlet/doubletdoublet
Overlap geneGlis1, Dmrtb1, LOC100039889
Upstream geneBC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48
Downstream geneLOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120K13.bB6Ng01-120K13.g
ACCDH924547DH924548
length9371,061
definitionDH924547|Mus musculus domesticus DNA, BAC clone: B6Ng01-120K13, 5' end.DH924548|Mus musculus domesticus DNA, BAC clone: B6Ng01-120K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,283,419 - 107,284,358)(107,389,953 - 107,391,038)
sequence
gaattcacctgagagcgttccctcagggtgcatagaggatggactggtac
cacactgtacaagatgctggagcacagcggtgtgcgagctgacgagtctg
tcaaggatcaccagggccagctcatactggccagaacgcaggggaaagtg
tgtaataaagtgtgagagagccgagcccagttgtagcaaggaaggataag
gacatccttatctcgatgccaagtcctcattctgggtgccacatgggaat
gggctgggaagaggcaggcagctctgtggtacccaggcgagtcatgctac
aaagggtagagaaagtatgaagaggtattggcgagatgggtacctccaag
ggctggtggcagattggatgctgaggttaaggagaaggaagcaggttcct
agcttggcatctgggtagaaggtggtcccatcagcagaagccatgctgga
gcaccccaggtgagcagcctgctgtcatgttagctatggcagtaatagta
caagagtgttgtgtaaagttttccaggatcctaatgccagagctcactgc
tcctccgtgtgtgtgatcagaggcagtccccagctccggtttctgccttc
cctctgctttccatgatgctggctcagtggtcctctagaacccccgtgcc
cctgcagcccgaaccgccagtgcttgcgcctgctctccctgagatgagtg
tcttagcacctcatttgtcaaaacccaggcatcagggctcagcccttagg
aagggtttggcaatccccagccctgcaactgaaaggccccccgcattctg
ccccttagagctctcagcagctgctgctctatgtgggacagtaaggcatt
ttgggcctttgttgttggaagatggagtatggtgagggagttagccagtg
tgggatacaggggttgaggagtagagaggatagggta
gaattcagtgctagcttcgcctgttctcccgaagaaagaatattctaata
tgacgtgccttccttccccttactaaggactgcattaattagggaatact
ttctgaagtgtaaaatgaagtctctgagtaagcacaattctttgcagaaa
gtaggaagcccacaagtcaggcagccctaccctcagatgtgaagccatct
gtgatttcagaacaagcggttttgctagctggaggtggtacgctgttgtg
aaatgctaaattaaataccacgacacgttattatggcttcaaaaagtagt
tacaggcttcaataagcacacttttatcacaagaacacacaacctaaagc
caaaatagttcagtttagcatgccaaaaatctgctcaccccatacattgt
tagacagagcagtgggagaaggcacccggaatttgctaccatttctctcc
atggtagccaacatctcctatcttctttggcagggaggccatttttctag
gctgtattttgcacacagaaatctgcatacagtgatttgcataccaaaac
cacatttgtaaaaagaaactgtttgcagggaagccagagggatagggttg
ccaccgttggcttctctgtacagtgcccccaggtggcttgcctttcattc
tcctctgtgctgaacccccccgcccccccacaaagtgttacgcactttat
gaggcattaaaaattaaagcaaatgtattctgtgtatttccacaaaccac
tctaacaataacaatcaggcagaatcatccttgccaacaaacagcccatc
cattgttcattaaaaggcttgtagtggtaactctagacccacatacaccc
agatttattgtatatcattttaaatataatctgtcttcaggcagtgctgt
gataccggcttttatataggggaaactgaggcagccagatgtagcaaggc
cagttggaactactccttcgtccctccacctcaccctccttctcatgtac
acactttgggccccaacccacttgctgaccaaatcagctgagggccggtc
atgttgagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_107283419_107284358
seq2: B6Ng01-120K13.b_46_982

seq1  GAATTCACCTGAGAGCGTTCCCTCAGGGTGCATAGAGGATGGACTGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGAGAGCGTTCCCTCAGGGTGCATAGAGGATGGACTGGTAC  50

seq1  CACACTGTACAAGATGCTGGAGCACAGCGGTGTGCGAGCTGACGAGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTACAAGATGCTGGAGCACAGCGGTGTGCGAGCTGACGAGTCTG  100

seq1  TCAAGGATCACCAGGGCCAGCTCATACTGGCCAGAACGCAGGGGAAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGATCACCAGGGCCAGCTCATACTGGCCAGAACGCAGGGGAAAGTG  150

seq1  TGTAATAAAGTGTGAGAGAGCCGAGCCCAGTTGTAGCAAGGAAGGATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAAGTGTGAGAGAGCCGAGCCCAGTTGTAGCAAGGAAGGATAAG  200

seq1  GACATCCTTATCTCGATGCCAAGTCCTCATTCTGGGTGCCACATGGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCTTATCTCGATGCCAAGTCCTCATTCTGGGTGCCACATGGGAAT  250

seq1  GGGCTGGGAAGAGGCAGGCAGCTCTGTGGTACCCAGGCGAGTCATGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGAAGAGGCAGGCAGCTCTGTGGTACCCAGGCGAGTCATGCTAC  300

seq1  AAAGGGTAGAGAAAGTATGAAGAGGTATTGGCGAGATGGGTACCTCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTAGAGAAAGTATGAAGAGGTATTGGCGAGATGGGTACCTCCAAG  350

seq1  GGCTGGTGGCAGATTGGATGCTGAGGTTAAGGAGAAGGAAGCAGGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGGCAGATTGGATGCTGAGGTTAAGGAGAAGGAAGCAGGTTCCT  400

seq1  AGCTTGGCATCTGGGTAGAAGGTGGTCCCATCAGCAGAAGCCATGCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGCATCTGGGTAGAAGGTGGTCCCATCAGCAGAAGCCATGCTGGA  450

seq1  GCACCCCAGGTGAGCAGCCTGCTGTCATGTTAGCTATGGCAGTAATAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCAGGTGAGCAGCCTGCTGTCATGTTAGCTATGGCAGTAATAGTA  500

seq1  CAAGAGTGTTGTGTAAAGTTTTCCAGGATCCTAATGCCAGAGCTCACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTGTTGTGTAAAGTTTTCCAGGATCCTAATGCCAGAGCTCACTGC  550

seq1  TCCTCCGTGTGTGTGATCAGAGGCAGTCCCCAGCTCCGGTTTCTGCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCGTGTGTGTGATCAGAGGCAGTCCCCAGCTCCGGTTTCTGCCTTC  600

seq1  CCTCTGCTTTCCATGATGCTGGCTCAGTGGTCCTCTAGAACCCCCGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTTCCATGATGCTGGCTCAGTGGTCCTCTAGAACCCCCGTGCC  650

seq1  CCTGCAGCCCGAACCGCCAGTGCTTGCGCCTGCTCTCCCTGAGATGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCCCGAACCGCCAGTGCTTGCGCCTGCTCTCCCTGAGATGAGTG  700

seq1  TCTTAGCACCTCATTTGTCAAAACCCAGGCATCAGGGCTCAGCCCTTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCACCTCATTTGTCAAAACCCAGGCATCAGGGCTCAGCCCTTAGG  750

seq1  AAGGGTTTGGCAATCCCCAGCCCTGCAACTGAAAGGCCCCCCGCATTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTTGGCAATCCCCAGCCCTGCAACTGAAAGGCCCCCCGCATTCTG  800

seq1  CCCCTTAGAGCTCTCAGCAGCTGCTGCTCTATGTGGGACAGTAAGGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTAGAGCTCTCAGCAGCTGCTGCTCTATGTGGGACAGTAAGGCATT  850

seq1  TTGGGCCTTTGTTGTTGGAAGATGGAGTATGGTGAGGGAGTTAGCCAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGGGCCTTTGTTGTTGGAAGATGGAGTATGGTGAGGGAGTTAGCCA-GT  899

seq1  GTGGGATACAGGGGTTGAGGAGTAAGAAGAGGAAAGGGTA  940
      ||||||||||||||||||||||||   |||||| ||||||
seq2  GTGGGATACAGGGGTTGAGGAGTA--GAGAGGATAGGGTA  937

seq1: chr4_107389953_107391038
seq2: B6Ng01-120K13.g_67_1127 (reverse)

seq1  CTTCTCCCAACATGGAACCGCACCTCAGACTGATTGGGTCAGCCAAAGTG  50
      |||||  |||||||  ||||  |||||| |||||| |||||||  |||| 
seq2  CTTCT--CAACATG--ACCGGCCCTCAG-CTGATTTGGTCAGC--AAGT-  42

seq1  GGGTTGGGGCACAACAGTGTGTAACATAGAGAAAGAGGGTGAAGGTGGGA  100
      |||||||||| ||| ||||||| |||| ||||| ||||||| ||||||  
seq2  GGGTTGGGGCCCAA-AGTGTGT-ACAT-GAGAAGGAGGGTG-AGGTGG--  86

seq1  GGGGACGAAGGAGTAGGTTTCCAAACCTGGCCTTGCTACATCTGGCTTGC  150
       |||||||||||||||  ||||||  |||||||||||||||||||| |||
seq2  AGGGACGAAGGAGTAG--TTCCAA--CTGGCCTTGCTACATCTGGC-TGC  131

seq1  CTCAGTTTCCCCCTATATAAAAGCCGGTATCACAGCACCTGCCCTGAAGA  200
      |||||||| |||||||||||||||||||||||||||| ||| ||||||||
seq2  CTCAGTTT-CCCCTATATAAAAGCCGGTATCACAGCA-CTG-CCTGAAGA  178

seq1  CAGATTATATTTAAAATGATATACAATAAAATCTGGGTGTATTGTGGGTC  250
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  CAGATTATATTTAAAATGATATACAAT-AAATCTGGGTGTA-TGTGGGTC  226

seq1  TTAGAGTTACCACTACAAGCCTTTTAATGAACAATGGATGGGCTGTTTGT  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TAGAGTTACCACTACAAGCCTTTTAATGAACAATGGATGGGCTGTTTGT  275

seq1  TGGCAAGGATGATTCTGCCTGATTGTTATTGTTAGAGTGGTTTGTGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGATGATTCTGCCTGATTGTTATTGTTAGAGTGGTTTGTGGAAA  325

seq1  TACACAGAATACATTTGCTTTAATTTTTAATGCCTCATAAAGTGCGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAATACATTTGCTTTAATTTTTAATGCCTCATAAAGTGCGTAAC  375

seq1  ACTTTGTGGGGGGGCGGGGGGGTTCAGCACAGAGGAGAATGAAAGGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGGGGGGGCGGGGGGGTTCAGCACAGAGGAGAATGAAAGGCAAG  425

seq1  CCACCTGGGGGCACTGTACAGAGAAGCCAACGGTGGCAACCCTATCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGGGGGCACTGTACAGAGAAGCCAACGGTGGCAACCCTATCCCTC  475

seq1  TGGCTTCCCTGCAAACAGTTTCTTTTTACAAATGTGGTTTTGGTATGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCCTGCAAACAGTTTCTTTTTACAAATGTGGTTTTGGTATGCAA  525

seq1  ATCACTGTATGCAGATTTCTGTGTGCAAAATACAGCCTAGAAAAATGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTATGCAGATTTCTGTGTGCAAAATACAGCCTAGAAAAATGGCC  575

seq1  TCCCTGCCAAAGAAGATAGGAGATGTTGGCTACCATGGAGAGAAATGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCAAAGAAGATAGGAGATGTTGGCTACCATGGAGAGAAATGGTA  625

seq1  GCAAATTCCGGGTGCCTTCTCCCACTGCTCTGTCTAACAATGTATGGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTCCGGGTGCCTTCTCCCACTGCTCTGTCTAACAATGTATGGGGT  675

seq1  GAGCAGATTTTTGGCATGCTAAACTGAACTATTTTGGCTTTAGGTTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATTTTTGGCATGCTAAACTGAACTATTTTGGCTTTAGGTTGTGT  725

seq1  GTTCTTGTGATAAAAGTGTGCTTATTGAAGCCTGTAACTACTTTTTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTGATAAAAGTGTGCTTATTGAAGCCTGTAACTACTTTTTGAAG  775

seq1  CCATAATAACGTGTCGTGGTATTTAATTTAGCATTTCACAACAGCGTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATAACGTGTCGTGGTATTTAATTTAGCATTTCACAACAGCGTACC  825

seq1  ACCTCCAGCTAGCAAAACCGCTTGTTCTGAAATCACAGATGGCTTCACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGCTAGCAAAACCGCTTGTTCTGAAATCACAGATGGCTTCACAT  875

seq1  CTGAGGGTAGGGCTGCCTGACTTGTGGGCTTCCTACTTTCTGCAAAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTAGGGCTGCCTGACTTGTGGGCTTCCTACTTTCTGCAAAGAAT  925

seq1  TGTGCTTACTCAGAGACTTCATTTTACACTTCAGAAAGTATTCCCTAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTACTCAGAGACTTCATTTTACACTTCAGAAAGTATTCCCTAATT  975

seq1  AATGCAGTCCTTAGTAAGGGGAAGGAAGGCACGTCATATTAGAATATTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTCCTTAGTAAGGGGAAGGAAGGCACGTCATATTAGAATATTCT  1025

seq1  TTCTTCGGGAGAACAGGCGAAGCTAGCACTGAATTC  1086
      ||||||||||||||||||||||||||||||||||||
seq2  TTCTTCGGGAGAACAGGCGAAGCTAGCACTGAATTC  1061