BAC Information

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BAC

Clone NameB6Ng01-120L15
Chromosome4 (Build37)
Map Location 44,322,607 - 44,470,112
singlet/doubletdoublet
Overlap geneMelk
Upstream gene4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38
Downstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120L15.bB6Ng01-120L15.g
ACCDH924595DH924596
length9941,092
definitionDH924595|Mus musculus domesticus DNA, BAC clone: B6Ng01-120L15, 5' end.DH924596|Mus musculus domesticus DNA, BAC clone: B6Ng01-120L15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,322,607 - 44,323,607)(44,469,008 - 44,470,112)
sequence
gaattctttctgtagaccaggctggcctcgaactcaccgagacccacctg
cctctgcttccaagtactgggactaacggtgtgccatcactgcctctctc
cccttttctttctctttgtggttctggggagtaaacctagggtcacaggg
ttgctggcacagtgctcttccctctgagtgacatttccattctccagcct
ttttctcttgttttccttgttttgttttgttttctaagtcagagtttggg
ggatgggttggggaagacagggtattgctatgtagccctagctgacctgg
aactcactatgtagaccacgctggtctcaaacaggtccccttgcttctgc
ctcctgagtaccgtcattaaaggtgtgtacttatccctagctctattttt
ttcttgttttttaattagcttttatttatgttttaacttatattggatct
cagcttcaaatagaaacaactctaaattatttttagaaatggttggaagt
ggggtatgacataggacatcagaatacagttatcaaaatatctttgtttt
ctcaggaaaatttattatttgatgaaaatcataagctaaagctgattgac
tttggtctttgtgcaaaacccaaggtaagtatggaaataaaaatgcattt
atgtctataactataactataaatatctatgtgttatttttcacttaatc
tttattgtttggttatgtccatttagaggaatattaaattttatccttag
cattaatagttttataagtatgctacataattctgagatggaaccaagat
tgtgagtccccccagggaagctatgagaatctcgagtgacaggtacatga
agccattatgatacgatactgaatcatgtgcttgtagtttgagtatttgc
cactagataatgcctttgtacatttgtgtacaagttgagaattgatgtgt
atctagtttttgtacccaagtgttttatactagggtaagttata
gaattcacaggacagggcagccatttctctgccactctcacaacccctga
cctagcccatcacacacacacacacacacacacacacacacacacacaca
cacacagtggcatctgagttcacagggcagagcagcatgaagcaacatcc
caaggggacattccattcatttcttcactctttcgtaactgggaatactt
cacaaacctaatgccgtaatgcttgctaagatgaaccaaatggacattct
ctcatgctgcttaaggagatgtgactgaacacagtcagttggacagccaa
gttagaagatcgaaatgttcctattctctggccctataatttggcttccc
tgagccttccctcaatgaatagtcacggacatgcttatagtcactataaa
tattccaaaatagggtatggggtaactgaataaactagtgtatatttttc
caggcactactcttttttgttgttgtttgtttttgtttttttcaagacag
agtttttctgtgtagccctggctgttctggaactcactttgtagaccagg
ctggcctcaaactcagaaatccgcctgcctctgcctcccgagtgctagga
ttaaaggcgtgtgccaccacaccttgccaggcactattctttaaccatgg
gaaacatttgtgaatagtcaagtggaaaggaggagacgggagagaaagag
ctttcaaacagtacagacaatttgtacgtcatcactcagaggtgtttcaa
cttgcaattatacaagaaaaactgttcactggttaaagaggagggtgggt
cacagggaatgagagaacgattcaattctgtctgcatctgaaatacaaaa
attaaaggatgtgtttgaaaatacatataccaaataataacagtccttat
aggtttcaagggttttatttctttctgaggaggttgtctcgattttcata
ttttctaaattgatggcctaatttctgagactaaaagaaagaaagttcag
tttttgcttttagcccccacagtgagcacttcaagaccctttgagtttat
gaagcccacttggagtcagaagagctataagagcctcagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_44322607_44323607
seq2: B6Ng01-120L15.b_49_1042

seq1  GAATTCTTTCTGTAGACCAGGCTGGCCTCGAACTCACCGAGACCCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGTAGACCAGGCTGGCCTCGAACTCACCGAGACCCACCTG  50

seq1  CCTCTGCTTCCAAGTACTGGGACTAACGGTGTGCCATCACTGCCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTCCAAGTACTGGGACTAACGGTGTGCCATCACTGCCTCTCTC  100

seq1  CCCTTTTCTTTCTCTTTGTGGTTCTGGGGAGTAAACCTAGGGTCACAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCTTTCTCTTTGTGGTTCTGGGGAGTAAACCTAGGGTCACAGGG  150

seq1  TTGCTGGCACAGTGCTCTTCCCTCTGAGTGACATTTCCATTCTCCAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGCACAGTGCTCTTCCCTCTGAGTGACATTTCCATTCTCCAGCCT  200

seq1  TTTTCTCTTGTTTTCCTTGTTTTGTTTTGTTTTCTAAGTCAGAGTTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTGTTTTCCTTGTTTTGTTTTGTTTTCTAAGTCAGAGTTTGGG  250

seq1  GGATGGGTTGGGGAAGACAGGGTATTGCTATGTAGCCCTAGCTGACCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGTTGGGGAAGACAGGGTATTGCTATGTAGCCCTAGCTGACCTGG  300

seq1  AACTCACTATGTAGACCACGCTGGTCTCAAACAGGTCCCCTTGCTTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTATGTAGACCACGCTGGTCTCAAACAGGTCCCCTTGCTTCTGC  350

seq1  CTCCTGAGTACCGTCATTAAAGGTGTGTACTTATCCCTAGCTCTATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGTACCGTCATTAAAGGTGTGTACTTATCCCTAGCTCTATTTTT  400

seq1  TTCTTGTTTTTTAATTAGCTTTTATTTATGTTTTAACTTATATTGGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTTTTTAATTAGCTTTTATTTATGTTTTAACTTATATTGGATCT  450

seq1  CAGCTTCAAATAGAAACAACTCTAAATTATTTTTAGAAATGGTTGGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCAAATAGAAACAACTCTAAATTATTTTTAGAAATGGTTGGAAGT  500

seq1  GGGGTATGACATAGGACATCAGAATACAGTTATCAAAATATCTTTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATGACATAGGACATCAGAATACAGTTATCAAAATATCTTTGTTTT  550

seq1  CTCAGGAAAATTTATTATTTGATGAAAATCATAAGCTAAAGCTGATTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAAAATTTATTATTTGATGAAAATCATAAGCTAAAGCTGATTGAC  600

seq1  TTTGGTCTTTGTGCAAAACCCAAGGTAAGTATGGAAATAAAAATGCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTTTGTGCAAAACCCAAGGTAAGTATGGAAATAAAAATGCATTT  650

seq1  ATGTCTATAACTATAACTATAAATATCTATGTGTTATTTTTCACTTAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATAACTATAACTATAAATATCTATGTGTTATTTTTCACTTAATC  700

seq1  TTTATTGTTTGGTTATGTCCATTTAGAGGAATATTAAATTTTATCCTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTTTGGTTATGTCCATTTAGAGGAATATTAAATTTTATCCTTAG  750

seq1  CATTAATAGTTTTATAAGTATGCTACATAATTCTGAGATGGAACCAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATAGTTTTATAAGTATGCTACATAATTCTGAGATGGAACCAAGAT  800

seq1  TGTGAGTCCCCCCAGGGAAGCTATGAGAATCTCGAGTGACAGGTAACATG  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTGAGTCCCCCCAGGGAAGCTATGAGAATCTCGAGTGACAGGT-ACATG  849

seq1  AAGCCATTATGATACGATACTGAATCATGTGCTTGTAGTTTGAGTATTTT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGCCATTATGATACGATACTGAATCATGTGCTTGTAGTTTGAGTA-TTT  898

seq1  GCCACTAGATGATGCCTTTGTTCATTTGTGTACAAGTTGAGAATTGAGTG  950
      |||||||||| |||||||||| ||||||||||||||||||||||||| ||
seq2  GCCACTAGATAATGCCTTTGTACATTTGTGTACAAGTTGAGAATTGA-TG  947

seq1  TGTATCTAGTTTTTGTTACCCAAGTGGTTATATAACTAGGGGTAAGTTAT  1000
      ||||||||||||||| ||||||||| ||| ||| |||| |||||||||||
seq2  TGTATCTAGTTTTTG-TACCCAAGT-GTTTTAT-ACTA-GGGTAAGTTAT  993

seq1  A  1001
      |
seq2  A  994

seq1: chr4_44469008_44470112
seq2: B6Ng01-120L15.g_68_1159 (reverse)

seq1  CCCCTTGAGGCTCTTTGTAGCTCTTCTTGACTCC-AGTGTGGCTTCATAG  49
       ||| |||||||| || ||||||||| ||||||| |||| ||||||||| 
seq2  -CCCCTGAGGCTC-TTATAGCTCTTC-TGACTCCAAGTG-GGCTTCATA-  45

seq1  ACCTCATA-GGTCTATGAAGGTGCTCACTGGTGTGTGTCTATAAGCAAAA  98
      | |||| | ||||| |||| ||||||||| ||| | | ||| ||||||||
seq2  AACTCAAAGGGTCT-TGAA-GTGCTCACT-GTG-GGGGCTAAAAGCAAAA  91

seq1  GCTGAACTTTCTTTCTTTATAATTCTACAGAAA-TAGGCCATCAATTTAG  147
       ||||||||||||||||  | | ||| |||||| ||||||||||||||||
seq2  ACTGAACTTTCTTTCTT--TTAGTCT-CAGAAATTAGGCCATCAATTTAG  138

seq1  AAAATATGAAAAATCGAGACAACCT-CTCAGAAAGAAAATAAAACCTTGA  196
      |||||||| |||||||||||||||| ||||||||||||  ||| ||||||
seq2  AAAATATG-AAAATCGAGACAACCTCCTCAGAAAGAAATAAAACCCTTGA  187

seq1  AACCCTATAAGGACTGTTAATATTTTGGTATATGTATTTTCAAAGCACAT  246
      || |||||||||||||||| || ||||||||||||||||||||| |||||
seq2  AA-CCTATAAGGACTGTTATTA-TTTGGTATATGTATTTTCAAA-CACAT  234

seq1  CCTTTAATTTTTGTTATTTCAGATGCAGACAGAATTGAAATCGTTCTCTC  296
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  CCTTTAATTTTTG-TATTTCAGATGCAGACAGAATTG-AATCGTTCTCTC  282

seq1  ATTCCCTGTGACCCACCCT-CTCTTTAACCAGTGGAACAGTTTTTCTTGT  345
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  ATTCCCTGTGACCCACCCTCCTCTTTAACCAGT-GAACAGTTTTTCTTGT  331

seq1  ATAATTGCAAGTTGAAACACCTCTGAGTGATGACGTACAAATTGTCTGTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGCAAGTTGAAACACCTCTGAGTGATGACGTACAAATTGTCTGTA  381

seq1  CTGTTTGAAAGCTCTTTCTCT-CCGTCTCCTCCTTTCCACTTGACTATTC  444
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGTTTGAAAGCTCTTTCTCTCCCGTCTCCTCCTTTCCACTTGACTATTC  431

seq1  ACAAATGTTTCCCATGGTTAAAGAATAGTGCCTGGCAAGGTGTGGTGGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTTTCCCATGGTTAAAGAATAGTGCCTGGCAAGGTGTGGTGGCA  481

seq1  CACGCCTTTAATCCTAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTAATCCTAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAG  531

seq1  TTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAACAGCCAGGGCTAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGAACAGCCAGGGCTAC  581

seq1  ACAGAAAAACTCTGTCTTGAAAAAAACAAAAACAAACAACAACAAAAAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAACTCTGTCTTGAAAAAAACAAAAACAAACAACAACAAAAAAG  631

seq1  AGTAGTGCCTGGAAAAATATACACTAGTTTATTCAGTTACCCCATACCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGCCTGGAAAAATATACACTAGTTTATTCAGTTACCCCATACCCT  681

seq1  ATTTTGGAATATTTATAGTGACTATAAGCATGTCCGTGACTATTCATTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGAATATTTATAGTGACTATAAGCATGTCCGTGACTATTCATTGA  731

seq1  GGGAAGGCTCAGGGAAGCCAAATTATAGGGCCAGAGAATAGGAACATTTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCTCAGGGAAGCCAAATTATAGGGCCAGAGAATAGGAACATTTC  781

seq1  GATCTTCTAACTTGGCTGTCCAACTGACTGTGTTCAGTCACATCTCCTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTAACTTGGCTGTCCAACTGACTGTGTTCAGTCACATCTCCTTA  831

seq1  AGCAGCATGAGAGAATGTCCATTTGGTTCATCTTAGCAAGCATTACGGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATGAGAGAATGTCCATTTGGTTCATCTTAGCAAGCATTACGGCA  881

seq1  TTAGGTTTGTGAAGTATTCCCAGTTACGAAAGAGTGAAGAAATGAATGGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTGTGAAGTATTCCCAGTTACGAAAGAGTGAAGAAATGAATGGA  931

seq1  ATGTCCCCTTGGGATGTTGCTTCATGCTGCTCTGCCCTGTGAACTCAGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCCTTGGGATGTTGCTTCATGCTGCTCTGCCCTGTGAACTCAGAT  981

seq1  GCCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1031

seq1  GATGGGCTAGGTCAGGGGTTGTGAGAGTGGCAGAGAAATGGCTGCCCTGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCTAGGTCAGGGGTTGTGAGAGTGGCAGAGAAATGGCTGCCCTGT  1081

seq1  CCTGTGAATTC  1105
      |||||||||||
seq2  CCTGTGAATTC  1092