BAC Information

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BAC

Clone NameB6Ng01-120M03
Chromosome1 (Build37)4 (Build37)
Map Location 10,495,761 - 10,496,69419,110,207 - 19,110,465
singlet/doubletsingletsinglet
Overlap geneCpa6
Upstream geneRrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1
Downstream geneLOC433271, C030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120M03.bB6Ng01-120M03.g
ACCDH924617DH924618
length943273
definitionDH924617|Mus musculus domesticus DNA, BAC clone: B6Ng01-120M03, 5' end.DH924618|Mus musculus domesticus DNA, BAC clone: B6Ng01-120M03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,495,761 - 10,496,694)(19,110,207 - 19,110,465)
sequence
gaattcagcccatcctgaataggaaagaaaataagagggagcatttgccc
tttcaatttcacctctgcctctatctcagaatcagatcacctgcctggga
caagagtggctcaagctaaggcaagcgttagaaagaagaggcacacttag
ctacagtcttttcagatctggaaggtaactgagctccttcctaaaatgat
tatttctaagccctcgagatgtttaaacaatgaaggacagtcattcctgg
agctgtctctgagtggtggtgactcctagacagtactagaacaagctgag
tgaataactaattgataaatcctgaattaattcaggcactggaacctgaa
tgtcactgtcctataacctcccaggctgtaataatatccatacaagtagg
cttgtttttcacatttatctttgctgattatagcactggacttattgcat
aaatattagtgagacgtgctcaaatccttaaatattacttgaggtaaagt
agggaattgctgttgcagtttttctttttaagtgtgtgtgtatgtgtgtg
tgtgtgtgcaagttcatgtggagaccttatgctcctcattaacctcgggt
ttttttgtgggttgtttgtttgttgtcctttgccctggctcacatgattc
agctaggctggctggtggtggatccagagattcctgcctcagccgtccca
caactgagattataagtgtacactaccacatacgacttcttatgtggatc
ctggggattgaacttggatcttaaagcaaacactttttttttttttggac
tgaggtatctttccagcctactgtgtttcagtcttcatgggaagattttt
aatttcttcctttttcctctcctttttcctctctcctttcctttcctttc
tctttcctttcctttcctttcctttcctttcctttcctttcct
agtttgcgaggattttattgagtatttttgcattgatattcataagagaa
cttggtctgaagttctctttctttgttggatcgttgtgtggttaaggtat
cagagtaattgtgacttcatagaatgaattgggtagagtaccttctgttt
ctattttgtggaatagtttgagtacagttggaattaggtcttctttgaag
gtctgatagaactctgcactaaacccatctggtcctgggctttttttggt
tgggagactattaatgactgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_10495761_10496694
seq2: B6Ng01-120M03.b_46_988

seq1  GAATTCAGCCCATCCTGAATAGGAAAGAAAATAAGAGGGAGCATTTGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCATCCTGAATAGGAAAGAAAATAAGAGGGAGCATTTGCCC  50

seq1  TTTCAATTTCACCTCTGCCTCTATCTCAGAATCAGATCACCTGCCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTCACCTCTGCCTCTATCTCAGAATCAGATCACCTGCCTGGGA  100

seq1  CAAGAGTGGCTCAAGCTAAGGCAAGCGTTAGAAAGAAGAGGCACACTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTGGCTCAAGCTAAGGCAAGCGTTAGAAAGAAGAGGCACACTTAG  150

seq1  CTACAGTCTTTTCAGATCTGGAAGGTAACTGAGCTCCTTCCTAAAATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCTTTTCAGATCTGGAAGGTAACTGAGCTCCTTCCTAAAATGAT  200

seq1  TATTTCTAAGCCCTCGAGATGTTTAAACAATGAAGGACAGTCATTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAGCCCTCGAGATGTTTAAACAATGAAGGACAGTCATTCCTGG  250

seq1  AGCTGTCTCTGAGTGGTGGTGACTCCTAGACAGTACTAGAACAAGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTCTGAGTGGTGGTGACTCCTAGACAGTACTAGAACAAGCTGAG  300

seq1  TGAATAACTAATTGATAAATCCTGAATTAATTCAGGCACTGGAACCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACTAATTGATAAATCCTGAATTAATTCAGGCACTGGAACCTGAA  350

seq1  TGTCACTGTCCTATAACCTCCCAGGCTGTAATAATATCCATACAAGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGTCCTATAACCTCCCAGGCTGTAATAATATCCATACAAGTAGG  400

seq1  CTTGTTTTTCACATTTATCTTTGCTGATTATAGCACTGGACTTATTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTTCACATTTATCTTTGCTGATTATAGCACTGGACTTATTGCAT  450

seq1  AAATATTAGTGAGACGTGCTCAAATCCTTAAATATTACTTGAGGTAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAGTGAGACGTGCTCAAATCCTTAAATATTACTTGAGGTAAAGT  500

seq1  AGGGAATTGCTGTTGCAGTTTTTCTTTTTAAGTGTGTGTGTATGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTGCTGTTGCAGTTTTTCTTTTTAAGTGTGTGTGTATGTGTGTG  550

seq1  TGTGTGTGCAAGTTCATGTGGAGACCTTATGCTCCTCATTAACCTCGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCAAGTTCATGTGGAGACCTTATGCTCCTCATTAACCTCGGGT  600

seq1  TTTTTTGTGGGTTGTTTGTTTGTTGTCCTTTGCCCTGGCTCACATGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTGGGTTGTTTGTTTGTTGTCCTTTGCCCTGGCTCACATGATTC  650

seq1  AGCTAGGCTGGCTGGTGGTGGATCCAGAGATTCCTGCCTCAGCCGTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGCTGGCTGGTGGTGGATCCAGAGATTCCTGCCTCAGCCGTCCCA  700

seq1  CAACTGAGATTATAAGTGTACACTACCACATACGACTTCTTATGTGGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAGATTATAAGTGTACACTACCACATACGACTTCTTATGTGGATC  750

seq1  CTGGGGATTGAACTTGGATCTTAAAGCAAACAC-TTTTTTTTTTTTGGAC  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGGGGATTGAACTTGGATCTTAAAGCAAACACTTTTTTTTTTTTTGGAC  800

seq1  TGAGGTATCTTTCCAGCCTACTGTGTTTCAGTCTTCATGGGAAGATTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTATCTTTCCAGCCTACTGTGTTTCAGTCTTCATGGGAAGATTTTT  850

seq1  AATTTCTTTCCTTTTTCCTCTCCTTTTTCCTCTCTCCTTTCCTTTCCTTT  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTC-TTCCTTTTTCCTCTCCTTTTTCCTCTCTCCTTTCCTTTCCTTT  899

seq1  CTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCT----------  934
      || ||||||||||||||||||||||||||||||||          
seq2  CT-CTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCT  943

seq1: chr4_19110207_19110465
seq2: B6Ng01-120M03.g_80_344 (reverse)

seq1  AAGCAGTCATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGG  50

seq1  TTTAGTGCAGAGTTCTGTCAGACCTTCAAAGAAGACCTAATTCCAACTGT  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGACCTAATTCCAACTGT  100

seq1  CCTCAAACTATTCCACAAAATATAAACAGAAGGTAATCTACCCAATTCAT  150
       ||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  ACTCAAACTATTCCACAAAATAGAAACAGAAGGTACTCTACCCAATTCAT  150

seq1  TCTATGAAGCCACAATTACTCTGATACCTAAACCACACAAAGATCGAACA  200
      ||||||||| ||||||||||||||||||| |||||||||| |||| ||||
seq2  TCTATGAAGTCACAATTACTCTGATACCTTAACCACACAACGATCCAACA  200

seq1  AAGAAAGAGAACTTCAGACCAATTTCCCT------TATCGATGCAAAACT  244
      |||||||||||||||||||||| ||| ||      |||| |||||||| |
seq2  AAGAAAGAGAACTTCAGACCAAGTTCTCTTATGAATATCAATGCAAAAAT  250

seq1  ACTCAATAAAATCCT  259
      |||||||||||||||
seq2  ACTCAATAAAATCCT  265