BAC Information

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BAC

Clone NameB6Ng01-120M04
Chromosome4 (Build37)
Map Location 124,741,390 - 124,891,181
singlet/doubletdoublet
Overlap geneDnali1, Snip1, 2310005N01Rik, Zc3h12a
Upstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2
Downstream geneLOC100039298, Grik3, Ftl2, Csf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120M04.bB6Ng01-120M04.g
ACCDH924619DH924620
length1,0911,020
definitionDH924619|Mus musculus domesticus DNA, BAC clone: B6Ng01-120M04, 5' end.DH924620|Mus musculus domesticus DNA, BAC clone: B6Ng01-120M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,741,390 - 124,742,478)(124,890,157 - 124,891,181)
sequence
gaattctgtgctggaggaatacccgaattctgcagtgacagacttgtggg
cagaacggcaagagagggagaaacttctaagttggtgggagaggatccac
tagtaaatgacacctctctctcttggcctccatctctggagaagttcaca
ggttctcagtggttctcattggtgtgggcatgcataagactattaggtgg
agggtttttgagagttctagctaggctgtgtagcccaggctagcttcaaa
ctctgatcctcctgcctctgcctcctgagctcactgggccttgccttgtt
agacatttatgggcttttgcgacacaactttgcatgtggcgctagccggc
ctagtactccctttgtagtccaggctggtcttgactttgaggcaattctc
ctatgtcctgcagagtgctgggattaagcacatgccggcacaccaggctc
tctatgaggactcttgatggagggaccaaagaatggagtttagaaggaag
aggactggtctagaagacctatatgttaaagcagacatctaaagtcagaa
gagtgctcagaacgtggagggcatggatttagagggtacctgcttggctg
caaacatacaaccatactgagaccccatgaactccagaaagctgagagga
aacccaaggtagggcacaggaagacacctatgttctggaccaagagctta
gaccttcccctagtcactgtgggctccccaccaccatctctctctctacc
ttggaggcaggatggcatttaagatttcttctgcctgtttggtaggatct
gggacacaggaagttgagggcagcttggccttgggtggctgtgggcttgt
actagagggtccaggctgctggatggtgacttttcagtggccgagcctaa
gaagagacaggttgatcagtctagtacctccagatttcctaggtctcttg
tacagccgtccccatttccagctttttccctcatctggtgatcttaagga
aatttgagctgggagaaatcccacgagggatttctgggctctgaccctgt
ggtttgactggggtttctagaatgagtggtcaggccctctg
gaattctccacgaaggatgcagttgttgcaaaagcaaggatctgagagcc
tcccctcgctcccctgagcagcctttagagccaaaaaaaaaaaaaaaaaa
aagactggggagaggacgacccccaaaagcagctcttacaatcaaaagct
gatgatgggtggctgcttttctatccgtaggttgacacggtctagaatag
tcaggttctagaactttctccatcaggtggacaacactagcccaagcaga
ggaaactgaagcccaaggagccagaagagtcagagcagagtccctcccac
cagtgcccaggatctgcacacgctccagaaagaagcagagaccaggactg
agaacaggaccaggtctcactgggtaggggtgggctggtggcaatgccct
gtacttccaacatgtgtcctccattggcatcagctgccacctccccaggc
tacctggtcagcatcctcagagcaaagccagctgcctatgttgtaatgag
catcagatgttacagtcaaggacttggagcccagcagatcccaaattgaa
gcattccttagagtcagttagcatcatcacccccacctgaagactccagc
atccatccacagaagccctgttcaggataagccccatccgaggacacggt
gctcccatgctcccacagtagacatgggtccggggaagcgggtaagcagt
tagaagacaggtctcctattgatctgcaagggcatcagccccatggttca
ggtgcaagacaaatccctgaggagtggacatggcctctgcttctgagcct
caactctagggtctcctcaggcaggagaaggagcctctgaagatttgaca
gagaccagatagagtttaagcgtactggcagatgcacacctgtgacgtca
gctgcttgggagtctgagacttgagagtgatactcagggcccacctcatg
gaccctgcttctgaatttaaaggttaaaggggctgggatgcagctcagtt
gtagaaggctccacctagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_124741390_124742478
seq2: B6Ng01-120M04.b_43_1133

seq1  GAATTCTGTGCTGGAGGAATACCCGAATTCTGCAGTGACAGACTTGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCTGGAGGAATACCCGAATTCTGCAGTGACAGACTTGTGGG  50

seq1  CAGAACGGCAAGAGAGGGAGAAACTTCTAAGTTGGTGGGAGAGGATCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACGGCAAGAGAGGGAGAAACTTCTAAGTTGGTGGGAGAGGATCCAC  100

seq1  TAGTAAATGACACCTCTCTCTCTTGGCCTCCATCTCTGGAGAAGTTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATGACACCTCTCTCTCTTGGCCTCCATCTCTGGAGAAGTTCACA  150

seq1  GGTTCTCAGTGGTTCTCATTGGTGTGGGCATGCATAAGACTATTAGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAGTGGTTCTCATTGGTGTGGGCATGCATAAGACTATTAGGTGG  200

seq1  AGGGTTTTTGAGAGTTCTAGCTAGGCTGTGTAGCCCAGGCTAGCTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTTGAGAGTTCTAGCTAGGCTGTGTAGCCCAGGCTAGCTTCAAA  250

seq1  CTCTGATCCTCCTGCCTCTGCCTCCTGAGCTCACTGGGCCTTGCCTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATCCTCCTGCCTCTGCCTCCTGAGCTCACTGGGCCTTGCCTTGTT  300

seq1  AGACATTTATGGGCTTTTGCGACACAACTTTGCATGTGGCGCTAGCCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTATGGGCTTTTGCGACACAACTTTGCATGTGGCGCTAGCCGGC  350

seq1  CTAGTACTCCCTTTGTAGTCCAGGCTGGTCTTGACTTTGAGGCAATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTACTCCCTTTGTAGTCCAGGCTGGTCTTGACTTTGAGGCAATTCTC  400

seq1  CTATGTCCTGCAGAGTGCTGGGATTAAGCACATGCCGGCACACCAGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCCTGCAGAGTGCTGGGATTAAGCACATGCCGGCACACCAGGCTC  450

seq1  TCTATGAGGACTCTTGATGGAGGGACCAAAGAATGGAGTTTAGAAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAGGACTCTTGATGGAGGGACCAAAGAATGGAGTTTAGAAGGAAG  500

seq1  AGGACTGGTCTAGAAGACCTATATGTTAAAGCAGACATCTAAAGTCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGTCTAGAAGACCTATATGTTAAAGCAGACATCTAAAGTCAGAA  550

seq1  GAGTGCTCAGAACGTGGAGGGCATGGATTTAGAGGGTACCTGCTTGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTCAGAACGTGGAGGGCATGGATTTAGAGGGTACCTGCTTGGCTG  600

seq1  CAAACATACAACCATACTGAGACCCCATGAACTCCAGAAAGCTGAGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATACAACCATACTGAGACCCCATGAACTCCAGAAAGCTGAGAGGA  650

seq1  AACCCAAGGTAGGGCACAGGAAGACACCTATGTTCTGGACCAAGAGCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAGGTAGGGCACAGGAAGACACCTATGTTCTGGACCAAGAGCTTA  700

seq1  GACCTTCCCCTAGTCACTGTGGGCTCCCCACCACCATCTCTCTCTCTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCCCCTAGTCACTGTGGGCTCCCCACCACCATCTCTCTCTCTACC  750

seq1  TTGGAGGCAGGATGGCATTTAAGATTTCTTCTGCCTGTTTGGTAGGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCAGGATGGCATTTAAGATTTCTTCTGCCTGTTTGGTAGGATCT  800

seq1  GGGACACAGGAAGTTGAGGGCAGCTTGGCCTTGGGTGGCTGTGGGCTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACAGGAAGTTGAGGGCAGCTTGGCCTTGGGTGGCTGTGGGCTTGT  850

seq1  ACTAGAGGGTCCAGGCTGCTGGATGGTGAC-TTTCAGTGGCCGAGCCTAA  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTAGAGGGTCCAGGCTGCTGGATGGTGACTTTTCAGTGGCCGAGCCTAA  900

seq1  GAAGAGACAGGTTGATCAGTCTAGTACCTCCAGATTTTCCTAGGTCTCTT  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAGAGACAGGTTGATCAGTCTAGTACCTCCAGA-TTTCCTAGGTCTCTT  949

seq1  GTACAGCCGTCCCCATTTCCAGCCTATTTCCCTCATCT-GTGATCTTAAA  998
      |||||||||||||||||||||| || |||||||||||| |||||||| ||
seq2  GTACAGCCGTCCCCATTTCCAG-CTTTTTCCCTCATCTGGTGATCTT-AA  997

seq1  GGAAATATGAGCT-GGAGATATCCCACGAGGGATATCT-GGCTCTGACCC  1046
      |||||| |||||| ||||| |||||||||||||| ||| |||||||||||
seq2  GGAAATTTGAGCTGGGAGAAATCCCACGAGGGATTTCTGGGCTCTGACCC  1047

seq1  TGTGTTTGAACTGGTGTTTCTAGAATGAGTGGTCAGG-CCTCTG  1089
      |||| ||  ||||| |||||||||||||||||||||| ||||||
seq2  TGTGGTTTGACTGGGGTTTCTAGAATGAGTGGTCAGGCCCTCTG  1091

seq1: chr4_124890157_124891181
seq2: B6Ng01-120M04.g_67_1086 (reverse)

seq1  TGCTAGGT-GAGCCCTCTACCACTGAGCTGCATCCCCAGCCCCTTTAACC  49
      |||||||| ||||| ||||| |||||||||||| ||||||||||||||||
seq2  TGCTAGGTGGAGCCTTCTACAACTGAGCTGCAT-CCCAGCCCCTTTAACC  49

seq1  TTTAAATTCAGAAGCAGGGGTCCATTGAGGTGGGCCCTGAGTATCACTCC  99
      |||||||||||||||| ||||||| ||||||||||||||||||||||| |
seq2  TTTAAATTCAGAAGCA-GGGTCCA-TGAGGTGGGCCCTGAGTATCACT-C  96

seq1  TCAAGTCTCAGACTCCCAAGCAGCTGACGTCACAGGTGTGCATCTGCCAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTCAGACTCCCAAGCAGCTGACGTCACAGGTGTGCATCTGCCAG  146

seq1  TACGCTTAAACCTCTATCTGGTCTCTGTCTAAATCTTCAGAGGCTCCTTC  199
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  TACGCTTAAA-CTCTATCTGGTCTCTGTC-AAATCTTCAGAGGCTCCTTC  194

seq1  TCCTGCCTGAGGAGACCCTAGAGTTGAGGCTCAGAAGCAGAGGCCATGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTGAGGAGACCCTAGAGTTGAGGCTCAGAAGCAGAGGCCATGTC  244

seq1  CACTCCTCAGGGATTTGTCTTGCACCTGAACCATGGGGCTGATGCCCTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTCAGGGATTTGTCTTGCACCTGAACCATGGGGCTGATGCCCTTG  294

seq1  CAGATCAATAGGAGACCTGTCTTCTAACTGCTTACCCGCTTCCCCGGACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAATAGGAGACCTGTCTTCTAACTGCTTACCCGCTTCCCCGGACC  344

seq1  CATGTCTACTGTGGGAGCATGGGAGCACCGTGTCCTCGGATGGGGCTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTACTGTGGGAGCATGGGAGCACCGTGTCCTCGGATGGGGCTTAT  394

seq1  CCTGAACAGGGCTTCTGTGGATGGATGCTGGAGTCTTCAGGTGGGGGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACAGGGCTTCTGTGGATGGATGCTGGAGTCTTCAGGTGGGGGTGA  444

seq1  TGATGCTAACTGACTCTAAGGAATGCTTCAATTTGGGATCTGCTGGGCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTAACTGACTCTAAGGAATGCTTCAATTTGGGATCTGCTGGGCTC  494

seq1  CAAGTCCTTGACTGTAACATCTGATGCTCATTACAACATAGGCAGCTGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCTTGACTGTAACATCTGATGCTCATTACAACATAGGCAGCTGGC  544

seq1  TTTGCTCTGAGGATGCTGACCAGGTAGCCTGGGGAGGTGGCAGCTGATGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTGAGGATGCTGACCAGGTAGCCTGGGGAGGTGGCAGCTGATGC  594

seq1  CAATGGAGGACACATGTTGGAAGTACAGGGCATTGCCACCAGCCCACCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGGACACATGTTGGAAGTACAGGGCATTGCCACCAGCCCACCCC  644

seq1  TACCCAGTGAGACCTGGTCCTGTTCTCAGTCCTGGTCTCTGCTTCTTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTGAGACCTGGTCCTGTTCTCAGTCCTGGTCTCTGCTTCTTTCT  694

seq1  GGAGCGTGTGCAGATCCTGGGCACTGGTGGGAGGGACTCTGCTCTGACTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGTGTGCAGATCCTGGGCACTGGTGGGAGGGACTCTGCTCTGACTC  744

seq1  TTCTGGCTCCTTGGGCTTCAGTTTCCTCTGCTTGGGCTAGTGTTGTCCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTCCTTGGGCTTCAGTTTCCTCTGCTTGGGCTAGTGTTGTCCAC  794

seq1  CTGATGGAGAAAGTTCTAGAACCTGACTATTCTAGACCGTGTCAACCTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAGAAAGTTCTAGAACCTGACTATTCTAGACCGTGTCAACCTAC  844

seq1  GGATAGAAAAGCAGCCACCCATCATCAGCTTTTGATTGTAAGAGCTGCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAAAAGCAGCCACCCATCATCAGCTTTTGATTGTAAGAGCTGCTT  894

seq1  TTGGGGGTCGTCCTCTCCCCAGTCTTTTTTTTTTTTTTTTTTTTGGCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTCGTCCTCTCCCCAGTCTTTTTTTTTTTTTTTTTTTTGGCTCT  944

seq1  AAAGGCTGCTCAGGGGAGCGAGGGGAGGCTCTCAGATCCTTGCTTTTGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGCTCAGGGGAGCGAGGGGAGGCTCTCAGATCCTTGCTTTTGCA  994

seq1  ACAACTGCATCCTTCGTGGAGAATTC  1025
      ||||||||||||||||||||||||||
seq2  ACAACTGCATCCTTCGTGGAGAATTC  1020