BAC Information

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BAC

Clone NameB6Ng01-120N03
Chromosome4 (Build37)
Map Location 62,937,562 - 63,093,443
singlet/doubletdoublet
Overlap geneCol27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn
Upstream geneSlc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12
Downstream geneAtp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120N03.bB6Ng01-120N03.g
ACCDH924662DH924663
length5011,061
definitionDH924662|Mus musculus domesticus DNA, BAC clone: B6Ng01-120N03, 5' end.DH924663|Mus musculus domesticus DNA, BAC clone: B6Ng01-120N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,937,562 - 62,938,068)(63,092,377 - 63,093,443)
sequence
cttgaggaacagggtgctagactgcctgacagctctgctggggtcccaca
ctcagcagtgaaaattaaggacaagttggccagagggaggggaggaagga
ggaagggactagctgtgctgacagaaggaacaacggatgaaccatagcac
ccttgatctccaaaggccagctgtgacctgctgagaatggctcctctccc
tgggttacacatgtggccacatctgggcctctcccaattggtccaccaag
cccaaatgttgactagccccagtcccttcctcccaggcagcttgtcctga
cccagccagtgtccatgtgtgcattagaacatgcaggtctggctgttctt
ctcttgggctctggtctcatgtaacctgaagggcattgcaggactaatat
agactaagattccttgggtcctgtacttgggccaaggcagctcccaagcc
tgcagggcaagagggaggcccttgtccttcccaaacatctcttttctagg
c
gaattcaatcaggcaagaggaaatagggtttgcagacaaacatgacccag
aggaccactctaaaggaacggctgtggacgttgtggcatgaatatgatag
tgtgttcaggctctttgtcacctgtgcatgctgagaaggaagagttccag
agaggaaggaggccggtgatgctgggcctagtgcctgagtaaagatattt
ggatgcttcctcaaggacaccagagagcagcagaaagcttgggagggcag
ggcaggcttgcatgcagatcacttgggaatagaggtactggtcccacctg
ctggcagagttctttccttagtgtcatccttgtcccgccctcccctgcag
ttctcactcctgtctgaggtgagaagcatcatctcaccccaagacctgga
ccgctttgaccacctggtgctgaggcgcgagatcgagtctatgaaggcga
ggcagccccccggccccggggttggagacacgtattccatggtttcctac
agcgacacaggctcatccacaggcagccacggcacctctacaaccgtcag
ctcggccagggtgagccacccctgccctatccttggtgagaaggtcaggg
cacggataagatgtttccctcctaagcctcgggttcctcatctgtgagag
cctggctgttgtggagtacctagtgtgtgctggacatggggacagtgggc
atctaagaaagatatgtcttctggggctctcagtctggggatagagggga
aaggtttcctaagggctatttctgtaagggatggttaggagccaacaaga
cgtctcaggggggaaaggagctgactaccaacccagttcagtccctggaa
cccatgtggtggaaagagagaactaagtgcaagttgtcctctgatcccac
actaatgcatgaacacacacacacattcatgcacatgcatgctaagaatg
taataaatgtaaaggatggttagacaaaacagacttcatatttgcagttc
acaggagatcaaacagggaaagcatggtgttagcctcagtgccagcacta
tacacgtgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_62937562_62938068
seq2: B6Ng01-120N03.b_47_553

seq1  GAATTCCTTGAGGAACAGGGTGCTAGACTGCCTGACAGCTCTGCTGGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGAGGAACAGGGTGCTAGACTGCCTGACAGCTCTGCTGGGGT  50

seq1  CCCACACTCAGCAGTGAAAATTAAGGACAAGTTGGCCAGAGGGAGGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTCAGCAGTGAAAATTAAGGACAAGTTGGCCAGAGGGAGGGGAG  100

seq1  GAAGGAGGAAGGGACTAGCTGTGCTGACAGAAGGAACAACGGATGAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGAAGGGACTAGCTGTGCTGACAGAAGGAACAACGGATGAACCA  150

seq1  TAGCACCCTTGATCTCCAGAGGCCAGCTGTGACCTGCTGAGAATGGCTCC  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGCACCCTTGATCTCCAAAGGCCAGCTGTGACCTGCTGAGAATGGCTCC  200

seq1  TCTCCCTGGGTTACACATGTGGCCACATCTGGGCCTCTCCCAATTGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGGGTTACACATGTGGCCACATCTGGGCCTCTCCCAATTGGTCC  250

seq1  ACCAAGCCCAAATGTTGACTAGCCCCAGTCCCTTCCTCCCAGGCAGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCCAAATGTTGACTAGCCCCAGTCCCTTCCTCCCAGGCAGCTTG  300

seq1  TCCTGACCCAGCCAGTGTCCATGTGTGCATTAGAACATGCAGGTCTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACCCAGCCAGTGTCCATGTGTGCATTAGAACATGCAGGTCTGGCT  350

seq1  GTTCTTCTCTTGGGCTCTGGTCTCATGTAGCCTGAAGGGCATTGCAGGAC  400
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTTCTTCTCTTGGGCTCTGGTCTCATGTAACCTGAAGGGCATTGCAGGAC  400

seq1  TAATATAGACTAAGATTCCTTGGGTCCTGTACTTGGGCCAAGGCAGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAGACTAAGATTCCTTGGGTCCTGTACTTGGGCCAAGGCAGCTCC  450

seq1  CAAGCCTGCAGTGGAAGAGGGAGGCCCTTGTCCTTCCCGAAGATCTCATT  500
      ||||||||||| | |||||||||||||||||||||||| || ||||| ||
seq2  CAAGCCTGCAGGGCAAGAGGGAGGCCCTTGTCCTTCCCAAACATCTCTTT  500

seq1  TCTAGGC  507
      |||||||
seq2  TCTAGGC  507

seq1: chr4_63092377_63093443
seq2: B6Ng01-120N03.g_67_1127 (reverse)

seq1  TGACACCGTGT-TAGTGCTGGCCCTGAGCTGAACACCATGCTTTCCCTGT  49
      ||||| ||||| |||||||||| |||||   |||||||||||||||||||
seq2  TGACA-CGTGTATAGTGCTGGCACTGAGGCTAACACCATGCTTTCCCTGT  49

seq1  TTGATCTCCCTGTGAACTGCAATTATGGAGTTCTTGTTTTGTCTAACCAT  99
      ||||||| |||||||||||||| |||| |||   ||||||||||||||||
seq2  TTGATCT-CCTGTGAACTGCAAATATGAAGT--CTGTTTTGTCTAACCAT  96

seq1  CCTTTACATTTTATTACATTCTTAGCATGCATGTGCATGAATGTGTGTGT  149
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACA-TTTATTACATTCTTAGCATGCATGTGCATGAATGTGTGTGT  145

seq1  GTGTTCATGCATTCGTGTGGGAATCAGAGGACAACTTGCACTTAGTTCTC  199
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  GTGTTCATGCATTAGTGTGGG-ATCAGAGGACAACTTGCACTTAGTTCTC  194

seq1  TCTTTCCACCACATGGGTTCCAGGGACTGAACTGGGTTGGTAGTCAGCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCACCACATGGGTTCCAGGGACTGAACTGGGTTGGTAGTCAGCTC  244

seq1  CTTTCCCCCCCTGAGACGTCTTGTTGGCTCCTAACCATCCCTTACAGAAA  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTT-CCCCCCTGAGACGTCTTGTTGGCTCCTAACCATCCCTTACAGAAA  293

seq1  TAGCCCTTAGGAAACCTTTCCCCTCTATCCCCAGACTGAGAGCCCCAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTTAGGAAACCTTTCCCCTCTATCCCCAGACTGAGAGCCCCAGAA  343

seq1  GACATATCTTTCTTAGATGCCCACTGTCCCCATGTCCAGCACACACTAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATCTTTCTTAGATGCCCACTGTCCCCATGTCCAGCACACACTAGG  393

seq1  TACTCCACAACAGCCAGGCTCTCACAGATGAGGAACCCGAGGCTTAGGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCACAACAGCCAGGCTCTCACAGATGAGGAACCCGAGGCTTAGGAG  443

seq1  GGAAACATCTTATCCGTGCCCTGACCTTCTCACCAAGGATAGGGCAGGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATCTTATCCGTGCCCTGACCTTCTCACCAAGGATAGGGCAGGGG  493

seq1  TGGCTCACCCTGGCCGAGCTGACGGTTGTAGAGGTGCCGTGGCTGCCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACCCTGGCCGAGCTGACGGTTGTAGAGGTGCCGTGGCTGCCTGT  543

seq1  GGATGAGCCTGTGTCGCTGTAGGAAACCATGGAATACGTGTCTCCAACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGCCTGTGTCGCTGTAGGAAACCATGGAATACGTGTCTCCAACCC  593

seq1  CGGGGCCGGGGGGCTGCCTCGCCTTCATAGACTCGATCTCGCGCCTCAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCCGGGGGGCTGCCTCGCCTTCATAGACTCGATCTCGCGCCTCAGC  643

seq1  ACCAGGTGGTCAAAGCGGTCCAGGTCTTGGGGTGAGATGATGCTTCTCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTGGTCAAAGCGGTCCAGGTCTTGGGGTGAGATGATGCTTCTCAC  693

seq1  CTCAGACAGGAGTGAGAACTGCAGGGGAGGGCGGGACAAGGATGACACTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACAGGAGTGAGAACTGCAGGGGAGGGCGGGACAAGGATGACACTA  743

seq1  AGGAAAGAACTCTGCCAGCAGGTGGGACCAGTACCTCTATTCCCAAGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAACTCTGCCAGCAGGTGGGACCAGTACCTCTATTCCCAAGTGA  793

seq1  TCTGCATGCAAGCCTGCCCTGCCCTCCCAAGCTTTCTGCTGCTCTCTGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATGCAAGCCTGCCCTGCCCTCCCAAGCTTTCTGCTGCTCTCTGGT  843

seq1  GTCCTTGAGGAAGCATCCAAATATCTTTACTCAGGCACTAGGCCCAGCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGAGGAAGCATCCAAATATCTTTACTCAGGCACTAGGCCCAGCAT  893

seq1  CACCGGCCTCCTTCCTCTCTGGAACTCTTCCTTCTCAGCATGCACAGGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGCCTCCTTCCTCTCTGGAACTCTTCCTTCTCAGCATGCACAGGTG  943

seq1  ACAAAGAGCCTGAACACACTATCATATTCATGCCACAACGTCCACAGCCG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGCCTGAACACACTATCATATTCATGCCACAACGTCCACAGCCG  993

seq1  TTCCTTTAGAGTGGTCCTCTGGGTCATGTTTGTCTGCAAACCCTATTTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAGAGTGGTCCTCTGGGTCATGTTTGTCTGCAAACCCTATTTCC  1043

seq1  TCTTGCCTGATTGAATTC  1067
      ||||||||||||||||||
seq2  TCTTGCCTGATTGAATTC  1061