BAC Information

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BAC

Clone NameB6Ng01-120N12
Chromosome4 (Build37)
Map Location 52,467,659 - 52,468,815
singlet/doubletsinglet
Overlap geneSmc2
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724
Downstream geneLOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120N12.bB6Ng01-120N12.g
ACCDH924680DH924681
length1,1451,057
definitionDH924680|Mus musculus domesticus DNA, BAC clone: B6Ng01-120N12, 5' end.DH924681|Mus musculus domesticus DNA, BAC clone: B6Ng01-120N12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaggggttagaccctgaggtacccctggcataactagtgtaca
agattccatcatctgccagctctcaggacatgacattttggccatcccaa
agtttgcacaggtcctagtcagaatgcagtgtaggttgaagacacttcta
tttccattacatgtcatactcacaatgtattaaaagcagtgcatataatt
gcccaaccttgttcaatgcttctaaggccctattcaaaactggcatctta
actgagaggatcaaaagggtcatgggtttcataaattggttccaccaatg
caaacacttttatttagactgactctctaggatacttctggacatcttgt
tcaaatggtgctggcagtcagccttttctgttagtgtagtccccattccc
taaaggcctttctaataagagggcttgtgctcacataccgtaacagtggt
tagtaaccatgtagctaagaatgaccttggacttgctgagattataggtg
tgtttcaccactcctggtttatgtggtcgtggagatcaatcagtgtatca
ggttttcagttaatacagttagtctgtgtgatcatgattttgttgaataa
cctattgggccatgggacatatatgtgacatgaagtaagtctgtcctact
gctgtagatgaattcttacctgtgaggtagcatatctgcctagacagaaa
tggtgttctgttccatagcagccaaaatgacaatgtaaataataggttct
gcagtggaacaaaggccactgatacccaaatgtcccaaagggtcccgctc
agaacagaagcactagatcactgcagttattctacaatctgatgtcatca
tcttaattttctccctaagaaagccctgaaaagtgaattcatttctattt
gccccgtgttttgacaggagtaataatgtccgtgtctagtgccttagtct
cttttctattgctctcatggaatatcttgaaagcacctgaagagaaagtt
atcaaagaaagttagagcagcagagttgaattggctactcacattgcact
cagcatgagcaattagtgatgaatgcttgttgcccacctcactttctggt
tcaaaggtagcccagggaatgtacacccctcgtgggtggcattcc
gaattctctgtttatatctgttccccatttttaatgggattatttgaggg
gttttttttttgtatctagtttcttgaattccttacattttgtatattaa
tcctctaatgaatgtggagttgaaaaaaaaaaaacttttctaattctata
ggctgccattttgtctgattgactgtgtactttgccttacagaggctttc
cagttttttgaggtcccttttattaatcgttgatcttagtgtgtgtgtgg
tgtacttttcagaaagtcatctcttctaccaatgcctcagggtaattctt
gagtttctcttttatcaggttcagtgtatccagttttgtttgatgtcttc
gatccatttgggcctgagttttgttcagtgtgataaatataaatctattt
gcattcttttacatgcagacatacagttactagcaccagcaccatttgtt
gaagacgttctcctttttaaatgtgtattctgacttctttgtcaaatatc
agatgggcacctgagtgtttatttatgtcttggtcttcaatccaatttca
ttgatgattgtatctgtttttatgctagtaccatggaaattttactacta
tagttctacaatacaacttgaaatcaggaatatgatacctccagcagttc
ttctatttttcagaattgttttacatattctaggctctttgtttttccat
atacagctgggaaattgtcctttcaatatttctaaagaattggttttaga
attttaaaggggattatgttacatcggtagattacttttggtaggatggc
ccttttttactattattaaccctaatatcccaatgagcatgggaaatggg
aaatctttctatattctgataccttcttcaatttcattcttcaaacatga
agtttgtattatacagttttcacttgttgggagagttactgtaagatatt
ttctattattgaagatatggggagggtgctgttctctgattttgtttcat
ccacttttcatttgtggtaagaaagttacaagattttttagaagttaatc
tgtactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52467659_52468815
seq2: B6Ng01-120N12.b_48_1192

seq1  GAATTCTTAGGGGTTAGACCCTGAGGTACCCCTGGCATAACTAGTGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGGGTTAGACCCTGAGGTACCCCTGGCATAACTAGTGTACA  50

seq1  AGATTCCATCATCTGCCAGCTCTCAGGACATGACATTTTGGCCATCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCATCATCTGCCAGCTCTCAGGACATGACATTTTGGCCATCCCAA  100

seq1  AGTTTGCACAGGTCCTAGTCAGAATGCAGTGTAGGTTGAAGACACTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCACAGGTCCTAGTCAGAATGCAGTGTAGGTTGAAGACACTTCTA  150

seq1  TTTCCATTACATGTCATACTCACAATGTATTAAAAGCAGTGCATATAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTACATGTCATACTCACAATGTATTAAAAGCAGTGCATATAATT  200

seq1  GCCCAACCTTGTTCAATGCTTCTAAGGCCCTATTCAAAACTGGCATCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACCTTGTTCAATGCTTCTAAGGCCCTATTCAAAACTGGCATCTTA  250

seq1  ACTGAGAGGATCAAAAGGGTCATGGGTTTCATAAATTGGTTCCACCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGGATCAAAAGGGTCATGGGTTTCATAAATTGGTTCCACCAATG  300

seq1  CAAACACTTTTATTTAGACTGACTCTCTAGGATACTTCTGGACATCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTTTTATTTAGACTGACTCTCTAGGATACTTCTGGACATCTTGT  350

seq1  TCAAATGGTGCTGGCAGTCAGCCTTTTCTGTTAGTGTAGTCCCCATTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGGTGCTGGCAGTCAGCCTTTTCTGTTAGTGTAGTCCCCATTCCC  400

seq1  TAAAGGCCTTTCTAATAAGAGGGCTTGTGCTCACATACCGTAACAGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCCTTTCTAATAAGAGGGCTTGTGCTCACATACCGTAACAGTGGT  450

seq1  TAGTAACCATGTAGCTAAGAATGACCTTGGACTTGCTGAGATTATAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACCATGTAGCTAAGAATGACCTTGGACTTGCTGAGATTATAGGTG  500

seq1  TGTTTCACCACTCCTGGTTTATGTGGTCGTGGAGATCAATCAGTGTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCACCACTCCTGGTTTATGTGGTCGTGGAGATCAATCAGTGTATCA  550

seq1  GGTTTTCAGTTAATACAGTTAGTCTGTGTGATCATGATTTTGTTGAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAGTTAATACAGTTAGTCTGTGTGATCATGATTTTGTTGAATAA  600

seq1  CCTATTGGGCCATGGGACATATATGTGACATGAAGTAAGTCTGTCCTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTGGGCCATGGGACATATATGTGACATGAAGTAAGTCTGTCCTACT  650

seq1  GCTGTAGATGAATTCTTACCTGTGAGGTAGCATATCTGCCTAGACAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGATGAATTCTTACCTGTGAGGTAGCATATCTGCCTAGACAGAAA  700

seq1  TGGTGTTCTGTTCCATAGCAGCCAAAATGACAATGTAAATAATAGGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCTGTTCCATAGCAGCCAAAATGACAATGTAAATAATAGGTTCT  750

seq1  GCAGTGGAACAAAGGCCACTGATACCCAAATGTCCCAAAGGGTCCCGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGAACAAAGGCCACTGATACCCAAATGTCCCAAAGGGTCCCGCTC  800

seq1  AGAACAGAAGCACTAGATCACTGCAGTTATTCTACAATCTGATGTCATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAAGCACTAGATCACTGCAGTTATTCTACAATCTGATGTCATCA  850

seq1  TCTTAATTTTCTCCCTAAGAAAGCCCTGAAAAGTGAATTCATTTCTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTTCTCCCTAAGAAAGCCCTGAAAAGTGAATTCATTTCTATTT  900

seq1  GCCCCGTGTTTTGACAGGAGTAATAATGTCCGTGTCTAGTGCCTTAGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGTGTTTTGACAGGAGTAATAATGTCCGTGTCTAGTGCCTTAGTCT  950

seq1  CTTTTTCTATTGCTCTTCATGGAATATCTTGAAAGCAACCTGAAGGAGAA  1000
      | ||||||||||||| |||||||||||||||||||| ||||||| |||||
seq2  C-TTTTCTATTGCTC-TCATGGAATATCTTGAAAGC-ACCTGAA-GAGAA  996

seq1  AGTTATCAAAGGAAAGTTAGAGCAGCAAGAGGTTGAATTGGCTACTCACA  1050
      |||||||||| ||||||||||||||| ||| |||||||||||||||||||
seq2  AGTTATCAAA-GAAAGTTAGAGCAGC-AGA-GTTGAATTGGCTACTCACA  1043

seq1  TTGCACTCAGCCATGAAGCAAATAGTGATGAATGCTTG-TGCTCACCTCA  1099
      |||||||||| |||| ||||| |||||||||||||||| ||| |||||||
seq2  TTGCACTCAG-CATG-AGCAATTAGTGATGAATGCTTGTTGCCCACCTCA  1091

seq1  CTTTCTGGTTCAGAGGGTAGCCCAGGGAATGGTACCACCCTCGGTGGGTG  1149
      |||||||||||| | ||||||||||||||| ||||  ||||| |||||| 
seq2  CTTTCTGGTTCA-AAGGTAGCCCAGGGAAT-GTACACCCCTC-GTGGGT-  1137

seq1  GGCATTCC  1157
      ||||||||
seq2  GGCATTCC  1145