BAC Information

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BAC

Clone NameB6Ng01-121G11
Chromosome4 (Build37)
Map Location 4,725,306 - 4,880,796
singlet/doubletdoublet
Overlap genenone
Upstream geneRps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1, A830012C17Rik, LOC100039297, LOC622019, Impad1
Downstream geneLOC100039338, 1700012H17Rik, LOC669309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121G11.bB6Ng01-121G11.g
ACCDH925096DH925097
length1,207845
definitionDH925096|Mus musculus domesticus DNA, BAC clone: B6Ng01-121G11, 5' end.DH925097|Mus musculus domesticus DNA, BAC clone: B6Ng01-121G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,879,556 - 4,880,796)(4,725,306 - 4,726,154)
sequence
gaattcctgtgatatatctataaatagattttaagaaaatgttttcatag
atagtaaatcctacgttctgaagggaacttttccctagctgacttgggaa
atacaggtagcatgctgaattttactgatgttggtcacccccttatgtct
cccaaagttggattgctgctagtccgtaggaaagaaagtgtggtttggga
ataacttgcctgaataagttgagctgtctgtacaatacaagtgagcagat
atgttgcaacctcaatgtttagatgaagctgtgggagagtataaagcctt
cttttggcttcttttcaactgtttgactctcaaaatccacaagctcaaca
aacaaatttaggaagaacctgttggtgatgagaactacaaacatgaaacc
tatctacatgaagatgttgctagtacagtgcacaatcagaaccacactag
cctcaaaaacaaatgacttgcctcaccctggagaggcacacagcaaaacg
gcacttcactctgaaatgttgtacctttagcccttcttctggcccagggc
atcataccaaagaaaaccagaaaaacaaactgctatagtagttgatggtc
acactgaacatgaatttcttgaaataagagaagtaagaaacaactgaatt
agagcaaacaaagaccagccaagatgccaaaaggcttgatgaactaagag
ttaatccactggttattagccaggagactatagcaccacaatactataga
ctataacacaacccaggtatgtgttgtacaaaaacaagtaagatgtatcc
gcattgtctccactttattttgaaacaattttcagctttcacaggttaga
aaaaaagtcacatcccacctctcctgatgctgacaccttcataagcctaa
cacagttatcaaaaagagaaaactagtagtaatttaattgtatttactaa
acttcaagccaggctttattcaaatgctgccagttttcattcatggccat
ttctcgtctataatcaagccatgtctacagatttcagctctgcgcatagt
ctactgagagtttgcatctttttctgtctctgtctctttatgctgactgc
ttgataagcatgctgttgttggttgatatctcctcaggatgcctgagctt
cccgaactaattgcaattgcatggacttccaatgtaatgtcccacccctt
ctgcatc

gaattctctgcccccctgtgaaatcctatataaatgctgtgtctgcttag
ttccctactgtcctttccctggtgaagtagaggcaaccacccctgggttt
atctttccacaccctggaccctcccaacaaacctcttttgtgagatttgc
acctgttgtgaccctctaattggaagaagccaagaatcagtggagagaga
gaagaagggaagaagtggagtggggctgaggctcctgagttgcctcagct
catctgggaatactctcctctgggagctgcaatgcccctgtcaaggcatc
ctctcacatctgtgtggtttctggtcttcagagtcccaggatatctttct
atctgaccagagaggccaacacctacattctcaagaaaacatatagctac
catatattatcaagaatatgtgaccaattactctgctctagatatggaga
acatgaaagtaggtgatcagagaaggtggatgagtatgaatgtctttaaa
cagagttgctcagtggtgtgtttactactaccaaagtctttctcttgcaa
ctgtctttacctcttcctgaataagaagagtatggatagacccacactaa
gggaagtaaacaaacaaacaaacaaacaaacaacaacaaaaaacaatctt
taggcccatggaagtaagaaagctgggagtgattgtgtaacctcacaatc
ccagcactgtggagtctgagacatggaagtacagtgagtctgaggctagc
ctgggctgcctattagttcaaggccagccagaaatataaaacaaatcctt
ttagaagaagaggaagagcagaggagaatgagaggaagaggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_4879556_4880796
seq2: B6Ng01-121G11.b_48_1254 (reverse)

seq1  GATGCAGAAAGGGTGTGGCATTACATATGGGAAGACTCATGCAAATTGCA  50
      ||||||||| ||||| | ||||||  || ||||| | ||||| |||||||
seq2  GATGCAGAAGGGGTGGGACATTAC--ATTGGAAGTC-CATGC-AATTGCA  46

seq1  AATTAGAGTTCGAGAAAGCACCAGGCAATCCCCTGAGGAGTATA-CAACC  99
      | |   |||||| | ||||  ||||||    ||||||||| ||| |||||
seq2  ATT---AGTTCG-GGAAGC-TCAGGCA---TCCTGAGGAG-ATATCAACC  87

seq1  AGACAACAGCAATGCTTATCAAAAGCAGTCAAGCATAAAAAGAGAAGGAA  149
      | |||||||| |||||||||  |||||||| |||||||| ||| |  || 
seq2  A-ACAACAGC-ATGCTTATC--AAGCAGTC-AGCATAAAGAGACAGAGA-  131

seq1  GGAAGACCAGAAAAAGATGCAAACTCCTCAGTAGACTAATGCGGCAGAGC  199
             |||||||||||||||||| ||||||||||| |||| |||||||
seq2  -------CAGAAAAAGATGCAAACT-CTCAGTAGACT-ATGC-GCAGAGC  171

seq1  TGAAATCTTGTAGGACCATGGCTTGGATTATAGACGAGGAATGGCCATTG  249
      ||||||| |||||   |||||||| ||||||||||||| |||||||| ||
seq2  TGAAATC-TGTAG--ACATGGCTT-GATTATAGACGAGAAATGGCCA-TG  216

seq1  AATGAAAAACTGGCAGCATTTGAATAAAGCCTGGCTTGAAGTTTAGTAAA  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATG-AAAACTGGCAGCATTTGAATAAAGCCTGGCTTGAAGTTTAGTAAA  265

seq1  TACAATTAAATTACTACTAGTTTTCTCTTTTTGATAACTGTGTTAGGCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTAAATTACTACTAGTTTTCTCTTTTTGATAACTGTGTTAGGCTT  315

seq1  ATGAAGGTGTCAGCATCAGGAGAGGTGGGATGTGACTTTTTTTCTAACCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTGTCAGCATCAGGAGAGGTGGGATGTGACTTTTTTTCTAACCT  365

seq1  GTGAAAGCTGAAAATTGTTTCAAAATAAAGTGGAGACAATGCGGATACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGCTGAAAATTGTTTCAAAATAAAGTGGAGACAATGCGGATACAT  415

seq1  CTTACTTGTTTTTGTACAACACATACCTGGGTTGTGTTATAGTCTATAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGTTTTTGTACAACACATACCTGGGTTGTGTTATAGTCTATAGT  465

seq1  ATTGTGGTGCTATAGTCTCCTGGCTAATAACCAGTGGATTAACTCTTAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGTGCTATAGTCTCCTGGCTAATAACCAGTGGATTAACTCTTAGT  515

seq1  TCATCAAGCCTTTTGGCATCTTGGCTGGTCTTTGTTTGCTCTAATTCAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGCCTTTTGGCATCTTGGCTGGTCTTTGTTTGCTCTAATTCAGT  565

seq1  TGTTTCTTACTTCTCTTATTTCAAGAAATTCATGTTCAGTGTGACCATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTACTTCTCTTATTTCAAGAAATTCATGTTCAGTGTGACCATCA  615

seq1  ACTACTATAGCAGTTTGTTTTTCTGGTTTTCTTTGGTATGATGCCCTGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTATAGCAGTTTGTTTTTCTGGTTTTCTTTGGTATGATGCCCTGGG  665

seq1  CCAGAAGAAGGGCTAAAGGTACAACATTTCAGAGTGAAGTGCCGTTTTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAAGGGCTAAAGGTACAACATTTCAGAGTGAAGTGCCGTTTTGC  715

seq1  TGTGTGCCTCTCCAGGGTGAGGCAAGTCATTTGTTTTTGAGGCTAGTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCTCTCCAGGGTGAGGCAAGTCATTTGTTTTTGAGGCTAGTGTG  765

seq1  GTTCTGATTGTGCACTGTACTAGCAACATCTTCATGTAGATAGGTTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGATTGTGCACTGTACTAGCAACATCTTCATGTAGATAGGTTTCAT  815

seq1  GTTTGTAGTTCTCATCACCAACAGGTTCTTCCTAAATTTGTTTGTTGAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAGTTCTCATCACCAACAGGTTCTTCCTAAATTTGTTTGTTGAGC  865

seq1  TTGTGGATTTTGAGAGTCAAACAGTTGAAAAGAAGCCAAAAGAAGGCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGATTTTGAGAGTCAAACAGTTGAAAAGAAGCCAAAAGAAGGCTTT  915

seq1  ATACTCTCCCACAGCTTCATCTAAACATTGAGGTTGCAACATATCTGCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCCCACAGCTTCATCTAAACATTGAGGTTGCAACATATCTGCTC  965

seq1  ACTTGTATTGTACAGACAGCTCAACTTATTCAGGCAAGTTATTCCCAAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTATTGTACAGACAGCTCAACTTATTCAGGCAAGTTATTCCCAAAC  1015

seq1  CACACTTTCTTTCCTACGGACTAGCAGCAATCCAACTTTGGGAGACATAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTCTTTCCTACGGACTAGCAGCAATCCAACTTTGGGAGACATAA  1065

seq1  GGGGGTGACCAACATCAGTAAAATTCAGCATGCTACCTGTATTTCCCAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGACCAACATCAGTAAAATTCAGCATGCTACCTGTATTTCCCAAG  1115

seq1  TCAGCTAGGGAAAAGTTCCCTTCAGAACGTAGGATTTACTATCTATGAAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAGGGAAAAGTTCCCTTCAGAACGTAGGATTTACTATCTATGAAA  1165

seq1  ACATTTTCTTAAAATCTATTTATAGATATATCACAGGAATTC  1241
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTTAAAATCTATTTATAGATATATCACAGGAATTC  1207


seq1: chr4_4725306_4726154
seq2: B6Ng01-121G11.g_67_911

seq1  GAATTCTCTGCCCCCCTGTGAAATCCTATATAAATGCTGTGTCTGCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCCCCCTGTGAAATCCTATATAAATGCTGTGTCTGCTTAG  50

seq1  TTCCCTACTGTCCTTTCCCTGGTGAAGTAGAGGCAACCACCCCTGGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTACTGTCCTTTCCCTGGTGAAGTAGAGGCAACCACCCCTGGGTTT  100

seq1  ATCTTTCCACACCCTGGACCCTCCCAACAAACCTCTTTTGTGAGATTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCACACCCTGGACCCTCCCAACAAACCTCTTTTGTGAGATTTGC  150

seq1  ACCTGTTGTGACCCTCTAATTGGAAGAAGCCAAGAATCAGTGGAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTGTGACCCTCTAATTGGAAGAAGCCAAGAATCAGTGGAGAGAGA  200

seq1  GAAGAAGGGAAGAAGTGGAGTGGGGCTGAGGCTCCTGAGTTGCCTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGGAAGAAGTGGAGTGGGGCTGAGGCTCCTGAGTTGCCTCAGCT  250

seq1  CATCTGGGAATACTCTCCTCTGGGAGCTGCAATGCCCCTGTCAAGGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGGAATACTCTCCTCTGGGAGCTGCAATGCCCCTGTCAAGGCATC  300

seq1  CTCTCACATCTGTGTGGTTTCTGGTCTTCAGAGTCCCAGGATATCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACATCTGTGTGGTTTCTGGTCTTCAGAGTCCCAGGATATCTTTCT  350

seq1  ATCTGACCAGAGAGGCCAACACCTACATTCTCAAGAAAACATATAGCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACCAGAGAGGCCAACACCTACATTCTCAAGAAAACATATAGCTAC  400

seq1  CATATATTATCAAGAATATGTGACCAATTACTCTGCTCTAGATATGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTATCAAGAATATGTGACCAATTACTCTGCTCTAGATATGGAGA  450

seq1  ACATGAAAGTAGGTGATCAGAGAAGGTGGATGAGTATGAATGTCTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAGTAGGTGATCAGAGAAGGTGGATGAGTATGAATGTCTTTAAA  500

seq1  CAGAGTTGCTCAGTGGTGTGTTTACTACTACCAAAGTCTTTCTCTTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGCTCAGTGGTGTGTTTACTACTACCAAAGTCTTTCTCTTGCAA  550

seq1  CTGTCTTTACCTCTTCCTGAATAAGAAGAGTATGGATAGACCCACACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTACCTCTTCCTGAATAAGAAGAGTATGGATAGACCCACACTAA  600

seq1  GGGAAGTAAACAAACAAACAAACAAACAAACAACAACAAAAAACAATC-T  649
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGAAGTAAACAAACAAACAAACAAACAAACAACAACAAAAAACAATCTT  650

seq1  TAGGCCCATGGAAGTAAAGAAAGCTGGGAGTGATTGTGTAACCTCACAAT  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAGGCCCATGGAAGT-AAGAAAGCTGGGAGTGATTGTGTAACCTCACAAT  699

seq1  CCCAGCACTGTGGAGTCTGAGACAGGGAAGTACAGTGAGTCTGAGGCTAG  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCAGCACTGTGGAGTCTGAGACATGGAAGTACAGTGAGTCTGAGGCTAG  749

seq1  CCTGGGCTGCCTAGTAAGTTCAAGGCCAGCCAGGAATATAAAACAAAATC  799
      ||||||||||||| | ||||||||||||||||| |||||||||| |||||
seq2  CCTGGGCTGCCTA-TTAGTTCAAGGCCAGCCAGAAATATAAAAC-AAATC  797

seq1  CTTTTAGAAGAAGAGGAAGAGGCAGAGGAGAAAGAGGAGGAAGAGGAGAA  849
      |||||||||||||||||||| ||||||||||| || ||||||||||||||
seq2  CTTTTAGAAGAAGAGGAAGA-GCAGAGGAGAATGA-GAGGAAGAGGAGAA  845


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